Experiment set4S151 for Rahnella sp. WP5

Compare to:

NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum

200 most important genes:

  gene name fitness t score description  
EX31_RS25365 -4.3 -2.9 50S ribosomal protein L31 compare
EX31_RS02520 -2.4 -1.6 sigma-54-dependent Fis family transcriptional regulator compare
EX31_RS14550 -2.3 -3.5 Trk system potassium transporter TrkH compare
EX31_RS18570 -2.3 -2.4 cold shock-like protein CspD compare
EX31_RS02530 -2.0 -2.4 ABC transporter ATP-binding protein compare
EX31_RS22430 -1.9 -1.5 hemolysin expression modulator Hha compare
EX31_RS09490 -1.9 -2.0 hypothetical protein compare
EX31_RS11540 -1.8 -3.6 dCTP deaminase compare
EX31_RS10180 -1.8 -2.1 type II 3-dehydroquinate dehydratase compare
EX31_RS11625 -1.8 -1.5 hypothetical protein compare
EX31_RS13045 -1.7 -10.0 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
EX31_RS07785 -1.6 -1.7 carbon storage regulator CsrA compare
EX31_RS15870 -1.6 -2.4 glutamate--ammonia ligase compare
EX31_RS02515 -1.5 -1.5 PAS domain-containing protein compare
EX31_RS15905 -1.5 -9.3 DNA polymerase I compare
EX31_RS15155 -1.5 -3.3 diaminopimelate epimerase compare
EX31_RS11845 -1.5 -1.2 repressor LexA compare
EX31_RS18255 -1.5 -3.1 3-phosphoserine/phosphohydroxythreonine transaminase compare
EX31_RS20190 -1.4 -1.4 PTS glucose transporter subunit IIA compare
EX31_RS23440 -1.3 -2.1 2-oxoglutarate dehydrogenase E1 component compare
EX31_RS08745 -1.3 -1.7 50S ribosomal protein L9 compare
EX31_RS25105 -1.3 -2.0 DUF2474 domain-containing protein compare
EX31_RS15880 -1.3 -6.2 nitrogen regulation protein NR(I) compare
EX31_RS04390 -1.2 -1.8 DNA polymerase III subunit chi compare
EX31_RS23245 -1.2 -10.0 asparagine synthase B compare
EX31_RS19205 -1.2 -2.9 50S ribosomal protein L25 compare
EX31_RS05825 -1.2 -1.4 mannitol-1-phosphate 5-dehydrogenase compare
EX31_RS23490 -1.2 -1.9 cell envelope integrity protein TolA compare
EX31_RS08595 -1.2 -2.0 transcription elongation factor GreA compare
EX31_RS15875 -1.2 -8.2 nitrogen regulation protein NR(II) compare
EX31_RS07415 -1.1 -2.1 bifunctional diguanylate cyclase/phosphodiesterase compare
EX31_RS16625 -1.1 -1.3 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
EX31_RS18540 -1.1 -0.7 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
EX31_RS11525 -1.1 -2.2 UTP--glucose-1-phosphate uridylyltransferase GalU compare
EX31_RS12400 -1.1 -1.6 RNA polymerase factor sigma-54 compare
EX31_RS03775 -1.0 -2.4 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
EX31_RS10020 -1.0 -0.9 YciI family protein compare
EX31_RS10930 -1.0 -2.0 protein DsrB compare
EX31_RS20495 -0.9 -4.5 outer membrane protein assembly factor BamB compare
EX31_RS22750 -0.9 -2.9 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
EX31_RS07470 -0.9 -1.5 hypothetical protein compare
EX31_RS25555 -0.9 -1.9 GpE family phage tail protein compare
EX31_RS24375 -0.9 -2.0 biofilm formation regulator BssS compare
EX31_RS14335 -0.9 -1.6 serine O-acetyltransferase compare
EX31_RS24255 -0.9 -6.8 glucans biosynthesis glucosyltransferase MdoH compare
EX31_RS14310 -0.9 -2.6 6-phosphofructokinase compare
EX31_RS09655 -0.9 -0.8 membrane protein compare
EX31_RS19795 -0.9 -1.1 hypothetical protein compare
EX31_RS19305 -0.9 -7.0 ribonucleoside-diphosphate reductase subunit alpha compare
EX31_RS23415 -0.9 -4.5 citrate synthase compare
EX31_RS24880 -0.9 -7.2 carboxy terminal-processing peptidase compare
EX31_RS02525 -0.9 -5.1 ABC transporter permease compare
EX31_RS23895 -0.8 -2.9 TetR/AcrR family transcriptional regulator compare
EX31_RS17835 -0.8 -2.1 PTS transporter subunit EIIB compare
EX31_RS20105 -0.8 -2.1 tRNA-Val compare
EX31_RS00170 -0.8 -1.9 DUF1471 domain-containing protein compare
EX31_RS01065 -0.8 -3.0 glycine zipper family protein compare
EX31_RS19845 -0.8 -1.7 DNA polymerase II small subunit compare
EX31_RS22145 -0.8 -1.4 phosphatidylglycerophosphatase A compare
EX31_RS06055 -0.7 -2.0 phosphate ABC transporter ATP-binding protein PstB compare
EX31_RS23175 -0.7 -3.0 amino acid ABC transporter substrate-binding protein compare
EX31_RS01920 -0.7 -1.8 hypothetical protein compare
EX31_RS21755 -0.7 -5.1 outer membrane protein assembly factor BamE compare
EX31_RS23320 -0.7 -2.0 alpha-D-glucose phosphate-specific phosphoglucomutase compare
EX31_RS04645 -0.7 -0.7 DUF2559 family protein compare
EX31_RS07830 -0.7 -3.2 murein hydrolase activator NlpD compare
EX31_RS13740 -0.7 -1.9 glutathione transferase GstA compare
EX31_RS19310 -0.7 -4.6 ribonucleotide-diphosphate reductase subunit beta compare
EX31_RS01695 -0.7 -0.8 RusA family crossover junction endodeoxyribonuclease compare
EX31_RS06915 -0.7 -1.5 type I glyceraldehyde-3-phosphate dehydrogenase compare
EX31_RS18045 -0.7 -2.1 macrodomain Ter protein MatP compare
EX31_RS19400 -0.7 -1.4 NADH-quinone oxidoreductase subunit NuoI compare
EX31_RS03400 -0.7 -2.5 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
EX31_RS01135 -0.7 -1.5 SDR family oxidoreductase compare
EX31_RS19440 -0.7 -4.7 transcriptional regulator LrhA compare
EX31_RS04035 -0.7 -4.8 phosphoserine phosphatase compare
EX31_RS00380 -0.7 -1.9 ABC transporter ATP-binding protein compare
EX31_RS10825 -0.6 -0.9 hypothetical protein compare
EX31_RS06735 -0.6 -1.8 HutD family protein compare
EX31_RS22080 -0.6 -3.4 peroxiredoxin C compare
EX31_RS21895 -0.6 -5.1 phosphoribosylformylglycinamidine synthase compare
EX31_RS01485 -0.6 -1.4 helix-turn-helix domain-containing protein compare
EX31_RS10380 -0.6 -2.4 DUF4440 domain-containing protein compare
EX31_RS08140 -0.6 -1.2 bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE compare
EX31_RS20890 -0.6 -1.1 hypothetical protein compare
EX31_RS14500 -0.6 -2.9 orotate phosphoribosyltransferase compare
EX31_RS20865 -0.6 -2.0 bacteriocin immunity protein compare
EX31_RS18920 -0.6 -2.2 ABC transporter permease compare
EX31_RS20140 -0.6 -1.6 hypothetical protein compare
EX31_RS03900 -0.6 -2.4 molecular chaperone DnaK compare
EX31_RS24855 -0.6 -1.8 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF compare
EX31_RS00985 -0.6 -1.7 type VI secretion protein compare
EX31_RS05125 -0.6 -2.5 hypothetical protein compare
EX31_RS00540 -0.6 -1.6 pentapeptide MXKDX repeat protein compare
EX31_RS01255 -0.6 -1.5 Crp/Fnr family transcriptional regulator compare
EX31_RS02360 -0.6 -1.1 CsbD family protein compare
EX31_RS09360 -0.6 -1.2 ABC transporter permease compare
EX31_RS18445 -0.6 -0.8 DUF2732 domain-containing protein compare
EX31_RS05040 -0.6 -2.4 helix-turn-helix domain-containing protein compare
EX31_RS24250 -0.6 -2.8 glucan biosynthesis protein G compare
EX31_RS25630 -0.6 -1.6 DUF3606 domain-containing protein compare
EX31_RS14345 -0.5 -1.7 protein-export chaperone SecB compare
EX31_RS00130 -0.5 -1.8 GGDEF domain-containing protein compare
EX31_RS10760 -0.5 -2.7 TonB-dependent siderophore receptor compare
EX31_RS14730 -0.5 -0.6 DUF2756 domain-containing protein compare
EX31_RS17460 -0.5 -1.5 putative selenoprotein compare
EX31_RS09140 -0.5 -1.9 cellulase family glycosylhydrolase compare
EX31_RS09205 -0.5 -1.1 siderophore-iron reductase FhuF compare
EX31_RS01270 -0.5 -2.8 LysR family transcriptional regulator compare
EX31_RS19195 -0.5 -2.3 16S rRNA pseudouridine(516) synthase RsuA compare
EX31_RS22250 -0.5 -1.4 ATP-dependent protease ATP-binding subunit ClpX compare
EX31_RS09405 -0.5 -2.7 iron uptake system protein EfeO compare
EX31_RS24120 -0.5 -2.3 hypothetical protein compare
EX31_RS06520 -0.5 -3.0 two-component system response regulator RstA compare
EX31_RS22620 -0.5 -2.5 5-(carboxyamino)imidazole ribonucleotide synthase compare
EX31_RS02670 -0.5 -1.0 YqgE/AlgH family protein compare
EX31_RS25415 -0.5 -0.7 helix-turn-helix domain-containing protein compare
EX31_RS06690 -0.5 -1.1 hypothetical protein compare
EX31_RS25140 -0.5 -1.2 AlpA family transcriptional regulator compare
EX31_RS20395 -0.5 -2.1 hydroxyethylthiazole kinase compare
EX31_RS16685 -0.5 -1.5 3-hydroxyacyl-CoA dehydrogenase family protein compare
EX31_RS13445 -0.5 -4.2 argininosuccinate synthase compare
EX31_RS02155 -0.5 -2.2 HD domain-containing protein compare
EX31_RS14180 -0.5 -4.1 argininosuccinate lyase compare
EX31_RS10770 -0.5 -2.5 HlyD family secretion protein compare
EX31_RS03310 -0.5 -1.6 hypothetical protein compare
EX31_RS25400 -0.5 -1.6 transcriptional regulator compare
EX31_RS16855 -0.5 -3.4 phosphoribosylamine--glycine ligase compare
EX31_RS08515 -0.5 -4.3 lipoprotein NlpI compare
EX31_RS16355 -0.5 -2.1 hypothetical protein compare
EX31_RS09905 -0.5 -1.5 protease SohB compare
EX31_RS25910 -0.5 -0.7 hypothetical protein compare
EX31_RS03010 -0.5 -2.4 helix-turn-helix domain-containing protein compare
EX31_RS20450 -0.5 -2.3 IMP dehydrogenase compare
EX31_RS21575 -0.5 -1.2 hypothetical protein compare
EX31_RS00110 -0.5 -1.8 ABC transporter permease compare
EX31_RS00820 -0.5 -1.9 VOC family protein compare
EX31_RS09790 -0.5 -1.5 autoinducer 2 ABC transporter permease LsrD compare
EX31_RS25965 -0.5 -1.6 hypothetical protein compare
EX31_RS24410 -0.5 -2.3 23S rRNA accumulation protein YceD compare
EX31_RS11280 -0.5 -1.7 flagellar basal body P-ring protein FlgI compare
EX31_RS11240 -0.5 -1.0 GNAT family N-acetyltransferase compare
EX31_RS25880 -0.5 -1.6 hypothetical protein compare
EX31_RS09730 -0.5 -2.0 sugar ABC transporter substrate-binding protein compare
EX31_RS16860 -0.5 -3.7 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
EX31_RS15165 -0.5 -2.0 tyrosine recombinase XerC compare
EX31_RS12065 -0.5 -2.7 glutathione S-transferase compare
EX31_RS19570 -0.5 -3.2 amidophosphoribosyltransferase compare
EX31_RS17020 -0.4 -1.8 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
EX31_RS10515 -0.4 -1.8 disulfide bond formation protein DsbB compare
EX31_RS20090 -0.4 -1.7 tRNA-Ala compare
EX31_RS11570 -0.4 -1.7 LysR family transcriptional regulator compare
EX31_RS24770 -0.4 -2.0 copper homeostasis periplasmic binding protein CopC compare
EX31_RS00330 -0.4 -1.6 drug:proton antiporter compare
EX31_RS09115 -0.4 -1.2 ABC transporter ATP-binding protein compare
EX31_RS02465 -0.4 -1.5 hypothetical protein compare
EX31_RS11840 -0.4 -2.9 diacylglycerol kinase compare
EX31_RS00115 -0.4 -2.0 SDR family oxidoreductase compare
EX31_RS06620 -0.4 -1.5 electron transport complex subunit RsxA compare
EX31_RS22570 -0.4 -1.6 conjugal transfer protein TraB compare
EX31_RS01595 -0.4 -0.6 phage minor tail protein G compare
EX31_RS07465 -0.4 -1.8 LysR family transcriptional regulator compare
EX31_RS15555 -0.4 -1.1 amino acid ABC transporter ATP-binding protein compare
EX31_RS00715 -0.4 -1.4 class A beta-lactamase compare
EX31_RS09685 -0.4 -1.5 GNAT family N-acetyltransferase compare
EX31_RS09445 -0.4 -2.7 flagella biosynthesis regulatory protein FliZ compare
EX31_RS24790 -0.4 -1.6 cation transporter compare
EX31_RS24555 -0.4 -2.7 two-component system sensor histidine kinase PhoQ compare
EX31_RS09965 -0.4 -2.2 anthranilate phosphoribosyltransferase compare
EX31_RS04480 -0.4 -1.3 lysis protein compare
EX31_RS21570 -0.4 -1.8 hypothetical protein compare
EX31_RS20730 -0.4 -2.4 exodeoxyribonuclease V subunit alpha compare
EX31_RS24115 -0.4 -0.8 tRNA-Lys compare
EX31_RS21295 -0.4 -1.1 acyl carrier protein compare
EX31_RS02285 -0.4 -1.7 PTS sugar transporter subunit IIB compare
EX31_RS24380 -0.4 -1.1 DNA damage-inducible protein I compare
EX31_RS10695 -0.4 -1.7 EthD family reductase compare
EX31_RS07080 -0.4 -1.7 NCS2 family permease compare
EX31_RS22695 -0.4 -1.9 phosphoribosylformylglycinamidine cyclo-ligase compare
EX31_RS14605 -0.4 -1.5 Sec-independent protein translocase subunit TatB compare
EX31_RS18095 -0.4 -1.5 quinone-dependent dihydroorotate dehydrogenase compare
EX31_RS08730 -0.4 -1.6 iron-sulfur cluster repair protein YtfE compare
EX31_RS16350 -0.4 -3.1 DsbA family protein compare
EX31_RS23500 -0.4 -1.0 peptidoglycan-associated lipoprotein Pal compare
EX31_RS09980 -0.4 -2.3 tryptophan synthase subunit alpha compare
EX31_RS17265 -0.4 -1.4 hypothetical protein compare
EX31_RS09290 -0.4 -0.9 hypothetical protein compare
EX31_RS14375 -0.4 -3.7 glycosyltransferase compare
EX31_RS17005 -0.4 -1.3 carbohydrate ABC transporter permease compare
EX31_RS24540 -0.4 -1.3 NAD-dependent protein deacylase compare
EX31_RS10535 -0.4 -0.9 GtrA family protein compare
EX31_RS05925 -0.4 -2.5 glyoxylate/hydroxypyruvate reductase GhrB compare
EX31_RS17465 -0.4 -1.1 hypothetical protein compare
EX31_RS12930 -0.4 -1.2 Rho-binding antiterminator compare
EX31_RS17790 -0.4 -0.9 citrate lyase acyl carrier protein compare
EX31_RS12230 -0.4 -3.4 RNase E specificity factor CsrD compare
EX31_RS14405 -0.4 -0.6 lipopolysaccharide heptosyltransferase RfaC compare
EX31_RS02235 -0.4 -1.2 helix-turn-helix transcriptional regulator compare
EX31_RS24385 -0.4 -1.0 dihydroorotase compare
EX31_RS10205 -0.4 -1.9 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase compare


Specific Phenotypes

None in this experiment

For Rahnella sp. WP5 in mixed community experiments

For mixed community Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum across organisms