Experiment set4S149 for Rahnella sp. WP5

Compare to:

NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum

200 most important genes:

  gene name fitness t score description  
EX31_RS21280 -2.5 -1.9 hydroxymyristoyl-ACP dehydratase compare
EX31_RS22430 -2.5 -2.4 hemolysin expression modulator Hha compare
EX31_RS11525 -2.1 -4.1 UTP--glucose-1-phosphate uridylyltransferase GalU compare
EX31_RS14320 -2.0 -2.6 envelope stress response regulator transcription factor CpxR compare
EX31_RS05825 -1.9 -2.2 mannitol-1-phosphate 5-dehydrogenase compare
EX31_RS02530 -1.8 -2.6 ABC transporter ATP-binding protein compare
EX31_RS12400 -1.8 -1.2 RNA polymerase factor sigma-54 compare
EX31_RS15870 -1.8 -2.4 glutamate--ammonia ligase compare
EX31_RS02520 -1.7 -2.0 sigma-54-dependent Fis family transcriptional regulator compare
EX31_RS20735 -1.5 -3.8 exodeoxyribonuclease V subunit beta compare
EX31_RS13045 -1.5 -8.3 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
EX31_RS18255 -1.4 -2.1 3-phosphoserine/phosphohydroxythreonine transaminase compare
EX31_RS14335 -1.4 -1.9 serine O-acetyltransferase compare
EX31_RS03775 -1.3 -2.7 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
EX31_RS23320 -1.3 -4.0 alpha-D-glucose phosphate-specific phosphoglucomutase compare
EX31_RS04390 -1.3 -2.5 DNA polymerase III subunit chi compare
EX31_RS23500 -1.3 -2.0 peptidoglycan-associated lipoprotein Pal compare
EX31_RS09535 -1.2 -1.7 flagellar hook-basal body complex protein FliE compare
EX31_RS25665 -1.2 -1.8 DUF2502 domain-containing protein compare
EX31_RS02525 -1.2 -5.5 ABC transporter permease compare
EX31_RS23440 -1.2 -2.0 2-oxoglutarate dehydrogenase E1 component compare
EX31_RS07470 -1.1 -1.3 hypothetical protein compare
EX31_RS18985 -1.1 -3.0 glutamine ABC transporter ATP-binding protein GlnQ compare
EX31_RS04320 -1.1 -2.7 hypothetical protein compare
EX31_RS18540 -1.1 -0.7 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
EX31_RS17265 -1.1 -2.4 hypothetical protein compare
EX31_RS23485 -1.0 -1.9 colicin uptake protein TolR compare
EX31_RS06990 -1.0 -3.0 GntR family transcriptional regulator compare
EX31_RS00545 -1.0 -1.8 molybdopterin-dependent oxidoreductase compare
EX31_RS15530 -1.0 -1.7 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit compare
EX31_RS10430 -1.0 -1.9 5-oxoprolinase subunit PxpB compare
EX31_RS06340 -1.0 -1.5 thiol peroxidase compare
EX31_RS10535 -1.0 -1.2 GtrA family protein compare
EX31_RS06485 -1.0 -1.5 YdbL family protein compare
EX31_RS03790 -1.0 -1.4 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
EX31_RS19375 -1.0 -2.4 NADH-quinone oxidoreductase subunit NuoN compare
EX31_RS01390 -1.0 -1.1 hypothetical protein compare
EX31_RS01965 -1.0 -2.5 DUF2931 family protein compare
EX31_RS11845 -0.9 -0.8 repressor LexA compare
EX31_RS10585 -0.9 -3.7 septum site-determining protein MinD compare
EX31_RS09515 -0.9 -1.7 GNAT family N-acetyltransferase compare
EX31_RS10035 -0.9 -1.2 cardiolipin synthase compare
EX31_RS03900 -0.9 -2.0 molecular chaperone DnaK compare
EX31_RS24380 -0.9 -2.0 DNA damage-inducible protein I compare
EX31_RS01075 -0.9 -3.6 manganese-binding transcriptional regulator MntR compare
EX31_RS10030 -0.9 -1.8 YciY family protein compare
EX31_RS23490 -0.9 -1.6 cell envelope integrity protein TolA compare
EX31_RS24450 -0.9 -1.5 aminodeoxychorismate lyase compare
EX31_RS12875 -0.9 -1.6 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
EX31_RS24385 -0.9 -2.3 dihydroorotase compare
EX31_RS21020 -0.9 -1.2 D-sedoheptulose 7-phosphate isomerase compare
EX31_RS10815 -0.9 -2.2 oxidoreductase compare
EX31_RS07785 -0.9 -0.5 carbon storage regulator CsrA compare
EX31_RS15155 -0.8 -2.2 diaminopimelate epimerase compare
EX31_RS09120 -0.8 -2.8 nitrate ABC transporter permease compare
EX31_RS00010 -0.8 -0.8 type II toxin-antitoxin system HipA family toxin compare
EX31_RS24375 -0.8 -1.4 biofilm formation regulator BssS compare
EX31_RS15880 -0.8 -3.8 nitrogen regulation protein NR(I) compare
EX31_RS20700 -0.8 -1.7 GNAT family N-acetyltransferase compare
EX31_RS23160 -0.8 -1.8 amino acid ABC transporter ATP-binding protein compare
EX31_RS16855 -0.8 -5.1 phosphoribosylamine--glycine ligase compare
EX31_RS03400 -0.8 -2.7 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
EX31_RS19440 -0.8 -4.5 transcriptional regulator LrhA compare
EX31_RS25880 -0.8 -2.7 hypothetical protein compare
EX31_RS26000 -0.8 -1.5 GntR family transcriptional regulator compare
EX31_RS09220 -0.8 -1.3 MurR/RpiR family transcriptional regulator compare
EX31_RS16860 -0.8 -5.8 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
EX31_RS22620 -0.8 -3.3 5-(carboxyamino)imidazole ribonucleotide synthase compare
EX31_RS15875 -0.8 -5.1 nitrogen regulation protein NR(II) compare
EX31_RS07590 -0.8 -1.5 bifunctional chorismate mutase/prephenate dehydrogenase compare
EX31_RS10490 -0.8 -1.6 putative selenium delivery protein YdfZ compare
EX31_RS07440 -0.7 -1.6 urea carboxylase-associated family protein compare
EX31_RS23560 -0.7 -2.1 phosphate starvation-inducible protein compare
EX31_RS10210 -0.7 -2.0 4-oxalomesaconate tautomerase compare
EX31_RS04775 -0.7 -2.5 Hsp33 family molecular chaperone HslO compare
EX31_RS19435 -0.7 -1.0 NADH-quinone oxidoreductase subunit A compare
EX31_RS20450 -0.7 -2.5 IMP dehydrogenase compare
EX31_RS25555 -0.7 -0.6 GpE family phage tail protein compare
EX31_RS22460 -0.7 -2.1 50S ribosomal protein L36 compare
EX31_RS16980 -0.7 -2.0 ATP-dependent dethiobiotin synthetase BioD compare
EX31_RS10575 -0.7 -2.2 hypothetical protein compare
EX31_RS25025 -0.7 -1.6 DUF1272 domain-containing protein compare
EX31_RS05040 -0.7 -2.5 helix-turn-helix domain-containing protein compare
EX31_RS06580 -0.7 -1.4 LysR family transcriptional regulator compare
EX31_RS10725 -0.7 -1.6 plasmid maintenance protein CcdB compare
EX31_RS10245 -0.7 -2.0 D-alanyl-D-alanine dipeptidase compare
EX31_RS01510 -0.7 -1.5 DinI-like family protein compare
EX31_RS15575 -0.7 -2.9 LysR family transcriptional regulator compare
EX31_RS07135 -0.7 -1.0 hypothetical protein compare
EX31_RS18095 -0.7 -2.4 quinone-dependent dihydroorotate dehydrogenase compare
EX31_RS10100 -0.7 -1.2 two-component system response regulator RssB compare
EX31_RS01650 -0.7 -1.5 hypothetical protein compare
EX31_RS25415 -0.7 -0.8 helix-turn-helix domain-containing protein compare
EX31_RS18045 -0.6 -1.3 macrodomain Ter protein MatP compare
EX31_RS02995 -0.6 -2.1 hypothetical protein compare
EX31_RS10010 -0.6 -2.1 acyl-CoA thioester hydrolase YciA compare
EX31_RS09520 -0.6 -1.3 hypothetical protein compare
EX31_RS02515 -0.6 -1.2 PAS domain-containing protein compare
EX31_RS10375 -0.6 -1.6 hypothetical protein compare
EX31_RS14610 -0.6 -1.0 twin-arginine translocase subunit TatE compare
EX31_RS06865 -0.6 -1.9 pyridoxal phosphate-dependent aminotransferase compare
EX31_RS21895 -0.6 -4.7 phosphoribosylformylglycinamidine synthase compare
EX31_RS10830 -0.6 -1.8 copper-binding protein compare
EX31_RS02130 -0.6 -1.6 amino acid-binding protein compare
EX31_RS16385 -0.6 -1.6 adenosylmethionine decarboxylase compare
EX31_RS23245 -0.6 -5.0 asparagine synthase B compare
EX31_RS08515 -0.6 -5.1 lipoprotein NlpI compare
EX31_RS24140 -0.6 -0.8 DUF2594 family protein compare
EX31_RS22750 -0.6 -1.7 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
EX31_RS10040 -0.6 -2.0 YciU family protein compare
EX31_RS19420 -0.6 -1.1 NADH-quinone oxidoreductase subunit NuoE compare
EX31_RS10825 -0.6 -0.8 hypothetical protein compare
EX31_RS10325 -0.6 -1.6 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
EX31_RS22490 -0.6 -2.5 pleiotropic regulatory protein RsmS compare
EX31_RS08270 -0.6 -1.7 DUF2000 domain-containing protein compare
EX31_RS01605 -0.6 -1.1 tail protein compare
EX31_RS25290 -0.6 -0.9 hypothetical protein compare
EX31_RS02625 -0.6 -0.9 hypothetical protein compare
EX31_RS02310 -0.5 -1.0 hypothetical protein compare
EX31_RS03480 -0.5 -1.9 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
EX31_RS15685 -0.5 -1.5 phage shock protein PspA compare
EX31_RS20395 -0.5 -2.1 hydroxyethylthiazole kinase compare
EX31_RS22185 -0.5 -0.9 YajQ family cyclic di-GMP-binding protein compare
EX31_RS22570 -0.5 -1.7 conjugal transfer protein TraB compare
EX31_RS12230 -0.5 -4.5 RNase E specificity factor CsrD compare
EX31_RS14115 -0.5 -2.0 metal-dependent hydrolase compare
EX31_RS24185 -0.5 -2.0 DNA-binding transcriptional repressor DeoR compare
EX31_RS19570 -0.5 -3.5 amidophosphoribosyltransferase compare
EX31_RS14220 -0.5 -1.1 met regulon transcriptional regulator MetJ compare
EX31_RS24070 -0.5 -1.7 malonic semialdehyde reductase compare
EX31_RS11625 -0.5 -0.6 hypothetical protein compare
EX31_RS04105 -0.5 -0.7 helix-turn-helix domain-containing protein compare
EX31_RS02225 -0.5 -1.2 hypothetical protein compare
EX31_RS20135 -0.5 -2.2 nucleotidyltransferase family protein compare
EX31_RS11260 -0.5 -1.7 CidB/LrgB family autolysis modulator compare
EX31_RS01055 -0.5 -1.8 MFS transporter compare
EX31_RS21755 -0.5 -3.7 outer membrane protein assembly factor BamE compare
EX31_RS00540 -0.5 -1.4 pentapeptide MXKDX repeat protein compare
EX31_RS22800 -0.5 -0.7 ArsC family reductase compare
EX31_RS24555 -0.5 -3.0 two-component system sensor histidine kinase PhoQ compare
EX31_RS19845 -0.5 -1.6 DNA polymerase II small subunit compare
EX31_RS12930 -0.5 -1.2 Rho-binding antiterminator compare
EX31_RS24190 -0.5 -1.4 DNA gyrase inhibitor compare
EX31_RS20265 -0.5 -1.0 YaiI/YqxD family protein compare
EX31_RS23470 -0.5 -0.9 cyd operon protein YbgE compare
EX31_RS22715 -0.5 -0.8 arsenate reductase (glutaredoxin) compare
EX31_RS22550 -0.5 -1.8 Kef family K(+) transporter compare
EX31_RS17025 -0.5 -1.2 FadR family transcriptional regulator compare
EX31_RS25945 -0.5 -1.3 hypothetical protein compare
EX31_RS16610 -0.5 -1.9 glycosyltransferase family 2 protein compare
EX31_RS06985 -0.5 -1.2 iron export ABC transporter permease subunit FetB compare
EX31_RS16640 -0.5 -1.7 gluconokinase compare
EX31_RS02165 -0.5 -2.1 hypothetical protein compare
EX31_RS06270 -0.5 -0.9 aldo/keto reductase compare
EX31_RS24410 -0.5 -2.6 23S rRNA accumulation protein YceD compare
EX31_RS06055 -0.5 -0.9 phosphate ABC transporter ATP-binding protein PstB compare
EX31_RS04035 -0.5 -3.1 phosphoserine phosphatase compare
EX31_RS14185 -0.5 -2.3 acetylglutamate kinase compare
EX31_RS17100 -0.5 -1.1 colicin immunity protein Cui compare
EX31_RS19575 -0.5 -3.3 colicin V production protein compare
EX31_RS14180 -0.5 -3.5 argininosuccinate lyase compare
EX31_RS11155 -0.5 -2.8 DHA2 family efflux MFS transporter permease subunit compare
EX31_RS07475 -0.5 -0.5 hypothetical protein compare
EX31_RS14340 -0.5 -0.5 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
EX31_RS02485 -0.5 -1.9 hypothetical protein compare
EX31_RS02110 -0.5 -1.3 L-rhamnose mutarotase compare
EX31_RS24610 -0.4 -1.4 hypothetical protein compare
EX31_RS23940 -0.4 -2.1 ABC transporter permease compare
EX31_RS21475 -0.4 -1.2 acid resistance repetitive basic protein Asr compare
EX31_RS02230 -0.4 -2.3 SDR family oxidoreductase compare
EX31_RS11855 -0.4 -1.4 CsbD family protein compare
EX31_RS06690 -0.4 -1.2 hypothetical protein compare
EX31_RS06285 -0.4 -1.0 peptide-methionine (R)-S-oxide reductase MsrB compare
EX31_RS14405 -0.4 -0.6 lipopolysaccharide heptosyltransferase RfaC compare
EX31_RS20670 -0.4 -0.5 RNA chaperone/antiterminator CspA compare
EX31_RS10195 -0.4 -2.1 LysR family transcriptional regulator compare
EX31_RS02470 -0.4 -1.1 alpha/beta fold hydrolase compare
EX31_RS24325 -0.4 -0.7 LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferasee compare
EX31_RS14500 -0.4 -2.5 orotate phosphoribosyltransferase compare
EX31_RS22695 -0.4 -1.8 phosphoribosylformylglycinamidine cyclo-ligase compare
EX31_RS16635 -0.4 -1.7 gluconate transporter compare
EX31_RS18600 -0.4 -1.3 ubiquinone-dependent pyruvate dehydrogenase compare
EX31_RS13815 -0.4 -0.6 ribonuclease T compare
EX31_RS11355 -0.4 -1.7 chemotaxis protein CheY compare
EX31_RS24760 -0.4 -2.3 DNA polymerase III subunit theta compare
EX31_RS16655 -0.4 -0.4 hypothetical protein compare
EX31_RS24115 -0.4 -0.8 tRNA-Lys compare
EX31_RS02590 -0.4 -1.8 nucleoside hydrolase compare
EX31_RS08240 -0.4 -1.9 ATP-binding cassette domain-containing protein compare
EX31_RS09375 -0.4 -1.3 gamma-glutamylcyclotransferase compare
EX31_RS19365 -0.4 -1.5 stress response protein ElaB compare
EX31_RS19150 -0.4 -1.7 hypothetical protein compare
EX31_RS06565 -0.4 -1.2 Ni(II)/Co(II)-binding transcriptional repressor RcnR compare
EX31_RS00050 -0.4 -1.5 ABC transporter ATP-binding protein compare
EX31_RS09115 -0.4 -1.0 ABC transporter ATP-binding protein compare
EX31_RS01095 -0.4 -1.8 metal ABC transporter permease compare
EX31_RS24945 -0.4 -1.0 5S ribosomal RNA compare
EX31_RS26045 -0.4 -2.2 hypothetical protein compare
EX31_RS23810 -0.4 -1.9 hypothetical protein compare
EX31_RS09760 -0.4 -1.3 D-xylose ABC transporter substrate-binding protein compare


Specific Phenotypes

None in this experiment

For Rahnella sp. WP5 in mixed community experiments

For mixed community Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum across organisms