Experiment set4S147 for Rahnella sp. WP5

Compare to:

NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum

200 most detrimental genes:

  gene name fitness t score description  
EX31_RS11185 +2.2 13.0 MBL fold metallo-hydrolase compare
EX31_RS07955 +1.8 16.2 GTP diphosphokinase compare
EX31_RS15055 +1.5 14.6 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
EX31_RS08130 +1.4 2.3 accessory factor UbiK family protein compare
EX31_RS22245 +1.3 4.3 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
EX31_RS03250 +1.3 9.4 RNA polymerase-binding protein DksA compare
EX31_RS10090 +1.2 3.6 NAD-dependent epimerase compare
EX31_RS09080 +1.2 1.8 LysR family transcriptional regulator compare
EX31_RS15530 +1.2 3.2 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit compare
EX31_RS05485 +1.1 9.1 endoglucanase compare
EX31_RS05785 +1.0 4.5 superoxide dismutase [Mn] compare
EX31_RS09580 +1.0 1.1 flagellar motor switch protein FliN compare
EX31_RS11485 +1.0 6.7 ABC transporter ATP-binding protein compare
EX31_RS05855 +1.0 3.7 glycine--tRNA ligase subunit beta compare
EX31_RS11510 +1.0 5.1 dTDP-4-dehydrorhamnose 3,5-epimerase compare
EX31_RS11480 +1.0 6.3 ABC transporter permease compare
EX31_RS24765 +1.0 3.1 non-heme ferritin compare
EX31_RS09490 +1.0 1.6 hypothetical protein compare
EX31_RS24605 +1.0 3.2 hypothetical protein compare
EX31_RS11500 +0.9 2.0 glycosyltransferase family 2 protein compare
EX31_RS14435 +0.9 5.6 glycosyltransferase family 4 protein compare
EX31_RS20480 +0.9 6.4 hypothetical protein compare
EX31_RS11490 +0.9 4.0 glycosyltransferase compare
EX31_RS14400 +0.9 3.4 ADP-heptose--LPS heptosyltransferase RfaF compare
EX31_RS24065 +0.9 1.7 pyrimidine utilization flavin reductase protein F compare
EX31_RS10180 +0.9 1.9 type II 3-dehydroquinate dehydratase compare
EX31_RS05660 +0.8 1.7 DUF1471 domain-containing protein compare
EX31_RS24325 +0.8 3.0 LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferasee compare
EX31_RS19400 +0.8 2.1 NADH-quinone oxidoreductase subunit NuoI compare
EX31_RS21190 +0.8 3.3 ribonuclease HI compare
EX31_RS20190 +0.8 1.3 PTS glucose transporter subunit IIA compare
EX31_RS23315 +0.8 4.1 replication initiation negative regulator SeqA compare
EX31_RS14600 +0.8 3.3 Sec-independent protein translocase subunit TatC compare
EX31_RS00510 +0.8 3.1 TetR/AcrR family transcriptional regulator compare
EX31_RS14415 +0.7 5.1 sugar glycosyltransferase compare
EX31_RS11845 +0.7 1.1 repressor LexA compare
EX31_RS18670 +0.7 4.8 outer membrane permeability protein SanA compare
EX31_RS10185 +0.7 3.2 O-antigen ligase family protein compare
EX31_RS06310 +0.7 3.6 NAD(P)H nitroreductase compare
EX31_RS12500 +0.7 5.9 stringent starvation protein A compare
EX31_RS12380 +0.7 3.1 PTS phosphocarrier protein NPr compare
EX31_RS14160 +0.7 4.1 HTH-type transcriptional repressor FabR compare
EX31_RS20140 +0.7 1.9 hypothetical protein compare
EX31_RS02385 +0.7 0.8 hypothetical protein compare
EX31_RS14445 +0.6 3.7 glycosyltransferase family 2 protein compare
EX31_RS09600 +0.6 2.8 flagellar type III secretion system protein FliR compare
EX31_RS11460 +0.6 1.6 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
EX31_RS14410 +0.6 5.9 glycosyltransferase family 9 protein compare
EX31_RS16000 +0.6 1.7 alternative ribosome-rescue factor A compare
EX31_RS21850 +0.6 1.5 pyridoxine 5'-phosphate synthase compare
EX31_RS10325 +0.6 1.8 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
EX31_RS24190 +0.6 1.7 DNA gyrase inhibitor compare
EX31_RS25100 +0.6 2.1 PAAR domain-containing protein compare
EX31_RS03645 +0.6 2.0 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
EX31_RS11560 +0.6 2.1 DUF1127 domain-containing protein compare
EX31_RS02625 +0.6 1.6 hypothetical protein compare
EX31_RS04800 +0.6 4.8 two-component system response regulator OmpR compare
EX31_RS20935 +0.6 1.4 hypothetical protein compare
EX31_RS15910 +0.6 4.2 thiol:disulfide interchange protein DsbA compare
EX31_RS04520 +0.6 2.0 YheU family protein compare
EX31_RS15540 +0.6 1.5 SDR family oxidoreductase compare
EX31_RS21280 +0.6 1.5 hydroxymyristoyl-ACP dehydratase compare
EX31_RS24620 +0.6 1.9 YebW family protein compare
EX31_RS15920 +0.6 2.7 YihD family protein compare
EX31_RS19390 +0.6 2.0 NADH-quinone oxidoreductase subunit NuoK compare
EX31_RS11110 +0.5 1.4 RidA family protein compare
EX31_RS21575 +0.5 1.9 hypothetical protein compare
EX31_RS10130 +0.5 3.1 M81 family metallopeptidase compare
EX31_RS14430 +0.5 4.5 putative lipopolysaccharide heptosyltransferase III compare
EX31_RS05010 +0.5 4.9 glycogen synthase GlgA compare
EX31_RS10055 +0.5 2.1 oligopeptide ABC transporter permease OppC compare
EX31_RS25415 +0.5 1.0 helix-turn-helix domain-containing protein compare
EX31_RS04320 +0.5 2.0 hypothetical protein compare
EX31_RS07105 +0.5 1.9 DUF3811 domain-containing protein compare
EX31_RS10045 +0.5 2.7 ABC transporter ATP-binding protein compare
EX31_RS09845 +0.5 1.7 osmotically-inducible lipoprotein OsmB compare
EX31_RS25025 +0.5 1.0 DUF1272 domain-containing protein compare
EX31_RS06825 +0.5 2.2 amino acid ABC transporter ATP-binding protein compare
EX31_RS21440 +0.5 1.9 arginine exporter ArgO compare
EX31_RS02700 +0.5 1.5 YggU family protein compare
EX31_RS26080 +0.5 1.2 hypothetical protein compare
EX31_RS06975 +0.5 2.7 YdgA family protein compare
EX31_RS24380 +0.5 1.7 DNA damage-inducible protein I compare
EX31_RS09815 +0.5 2.4 2-keto-3-deoxygluconate transporter compare
EX31_RS22715 +0.5 0.9 arsenate reductase (glutaredoxin) compare
EX31_RS03190 +0.5 2.0 hypothetical protein compare
EX31_RS20985 +0.5 3.7 sigma factor-binding protein Crl compare
EX31_RS00910 +0.5 2.4 LysR family transcriptional regulator compare
EX31_RS11195 +0.5 2.2 peptidylprolyl isomerase compare
EX31_RS23885 +0.5 1.2 DUF1471 domain-containing protein compare
EX31_RS25060 +0.5 1.5 DUF2767 family protein compare
EX31_RS01325 +0.5 1.8 hypothetical protein compare
EX31_RS17295 +0.5 1.1 hypothetical protein compare
EX31_RS15975 +0.5 0.9 peptide deformylase compare
EX31_RS24660 +0.5 1.3 MBL fold metallo-hydrolase compare
EX31_RS13875 +0.5 3.1 major outer membrane lipoprotein compare
EX31_RS13775 +0.4 1.3 transcriptional regulator SlyA compare
EX31_RS23875 +0.4 1.6 DUF1471 domain-containing protein compare
EX31_RS14000 +0.4 3.6 lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase compare
EX31_RS10360 +0.4 1.4 ClbS/DfsB family four-helix bundle protein compare
EX31_RS00630 +0.4 1.5 iron dicitrate ABC transporter ATP-binding protein compare
EX31_RS07410 +0.4 1.9 NAD(P)H-dependent oxidoreductase compare
EX31_RS22565 +0.4 2.5 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK compare
EX31_RS14825 +0.4 2.9 cell division ATP-binding protein FtsE compare
EX31_RS04145 +0.4 2.0 tRNA-Leu compare
EX31_RS06275 +0.4 1.6 D-hexose-6-phosphate mutarotase compare
EX31_RS25300 +0.4 0.9 YqaE/Pmp3 family membrane protein compare
EX31_RS24310 +0.4 2.0 hypothetical protein compare
EX31_RS08270 +0.4 0.9 DUF2000 domain-containing protein compare
EX31_RS24145 +0.4 2.7 UvrY/SirA/GacA family response regulator transcription factor compare
EX31_RS01785 +0.4 1.8 YfdQ family protein compare
EX31_RS05440 +0.4 3.8 insulinase family protein compare
EX31_RS00990 +0.4 1.8 type VI secretion system protein TssA compare
EX31_RS25875 +0.4 1.5 hypothetical protein compare
EX31_RS15585 +0.4 1.4 ABC transporter permease compare
EX31_RS09775 +0.4 0.9 (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase compare
EX31_RS01625 +0.4 2.1 Clp protease ClpP compare
EX31_RS11165 +0.4 1.9 hypothetical protein compare
EX31_RS01680 +0.4 1.5 antitermination protein Q compare
EX31_RS22185 +0.4 1.9 YajQ family cyclic di-GMP-binding protein compare
EX31_RS10345 +0.4 2.3 GNAT family N-acetyltransferase compare
EX31_RS20425 +0.4 2.1 DUF3313 domain-containing protein compare
EX31_RS01445 +0.4 1.3 J domain-containing protein compare
EX31_RS16730 +0.4 1.9 LysR family transcriptional regulator compare
EX31_RS12385 +0.4 3.4 RNase adapter RapZ compare
EX31_RS05290 +0.4 2.2 TetR/AcrR family transcriptional regulator compare
EX31_RS02145 +0.4 1.4 methionine synthase compare
EX31_RS15805 +0.4 1.8 DNA-directed RNA polymerase subunit omega compare
EX31_RS24260 +0.4 0.7 YceK/YidQ family lipoprotein compare
EX31_RS11815 +0.4 3.1 glucose-6-phosphate isomerase compare
EX31_RS07825 +0.4 3.5 RNA polymerase sigma factor RpoS compare
EX31_RS23030 +0.4 1.3 transcription antiterminator/RNA stability regulator CspE compare
EX31_RS00635 +0.4 0.8 hypothetical protein compare
EX31_RS06330 +0.4 1.7 exodeoxyribonuclease III compare
EX31_RS10590 +0.4 1.0 cell division topological specificity factor MinE compare
EX31_RS09700 +0.4 1.3 GlpM family protein compare
EX31_RS19260 +0.4 3.1 type I secretion system permease/ATPase compare
EX31_RS05755 +0.4 2.0 glutathione S-transferase compare
EX31_RS09180 +0.4 2.5 ABC transporter substrate-binding protein compare
EX31_RS06360 +0.4 2.5 LysR family transcriptional regulator compare
EX31_RS04955 +0.4 2.3 PTS ascorbate transporter subunit IIA compare
EX31_RS15350 +0.4 2.0 nitrogen fixation protein NifX compare
EX31_RS16545 +0.4 1.3 PTS lactose/cellobiose transporter subunit IIA compare
EX31_RS09400 +0.4 1.9 deferrochelatase/peroxidase EfeB compare
EX31_RS19410 +0.4 2.2 NADH-quinone oxidoreductase subunit NuoG compare
EX31_RS01905 +0.4 1.5 hypothetical protein compare
EX31_RS20970 +0.4 1.9 LysR family transcriptional regulator compare
EX31_RS20930 +0.4 0.5 hypothetical protein compare
EX31_RS02960 +0.4 1.5 hypothetical protein compare
EX31_RS09200 +0.4 2.1 dihydrodipicolinate synthase family protein compare
EX31_RS07965 +0.4 3.4 two-component sensor histidine kinase BarA compare
EX31_RS07625 +0.4 1.8 tail protein X compare
EX31_RS02925 +0.4 2.6 polysaccharide biosynthesis tyrosine autokinase compare
EX31_RS01480 +0.4 1.6 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD compare
EX31_RS02885 +0.4 1.9 glycosyltransferase family 2 protein compare
EX31_RS01565 +0.4 1.7 tail assembly protein compare
EX31_RS20405 +0.4 2.0 class I SAM-dependent methyltransferase compare
EX31_RS07080 +0.4 1.5 NCS2 family permease compare
EX31_RS25140 +0.4 1.0 AlpA family transcriptional regulator compare
EX31_RS08595 +0.4 1.2 transcription elongation factor GreA compare
EX31_RS18470 +0.4 1.5 pyruvate formate lyase 1-activating protein compare
EX31_RS10745 +0.4 1.5 chromate transporter compare
EX31_RS16010 +0.4 1.9 DUF1992 domain-containing protein compare
EX31_RS16555 +0.4 0.9 PTS sugar transporter subunit IIB compare
EX31_RS00760 +0.4 1.1 glutathione S-transferase compare
EX31_RS11010 +0.4 0.7 DgsA anti-repressor MtfA compare
EX31_RS12415 +0.4 1.9 LPS export ABC transporter periplasmic protein LptC compare
EX31_RS12175 +0.4 1.3 DNA-binding transcriptional regulator Fis compare
EX31_RS02915 +0.4 1.6 glycosyltransferase family 4 protein compare
EX31_RS19385 +0.4 1.2 NADH-quinone oxidoreductase subunit L compare
EX31_RS00575 +0.4 1.2 DUF554 domain-containing protein compare
EX31_RS26010 +0.4 1.4 YnhF family membrane protein compare
EX31_RS05595 +0.4 2.2 MarR family transcriptional regulator compare
EX31_RS02910 +0.4 2.1 hypothetical protein compare
EX31_RS22990 +0.4 2.4 diguanylate cyclase compare
EX31_RS16605 +0.4 1.5 iron permease compare
EX31_RS01660 +0.4 1.1 hypothetical protein compare
EX31_RS11190 +0.4 1.9 hypothetical protein compare
EX31_RS00840 +0.4 1.5 branched-chain amino acid ABC transporter permease compare
EX31_RS17560 +0.4 1.8 FadR family transcriptional regulator compare
EX31_RS07200 +0.4 2.1 FNR family transcription factor compare
EX31_RS02775 +0.4 1.9 hypothetical protein compare
EX31_RS10710 +0.4 2.2 hypothetical protein compare
EX31_RS19420 +0.3 1.0 NADH-quinone oxidoreductase subunit NuoE compare
EX31_RS13200 +0.3 3.3 phosphoenolpyruvate--protein phosphotransferase compare
EX31_RS12690 +0.3 2.1 YgjV family protein compare
EX31_RS19545 +0.3 1.9 histidine ABC transporter ATP-binding protein HisP compare
EX31_RS11395 +0.3 1.6 transcriptional regulator FtrA compare
EX31_RS06970 +0.3 1.4 mannose-6-phosphate isomerase compare
EX31_RS24745 +0.3 0.8 hypothetical protein compare
EX31_RS02745 +0.3 2.9 membrane-bound lytic murein transglycosylase MltC compare
EX31_RS15405 +0.3 1.4 nitrogen fixation protein NifQ compare
EX31_RS05870 +0.3 1.0 plasmid stabilization protein compare
EX31_RS10895 +0.3 1.9 acyl-CoA transferase compare
EX31_RS02055 +0.3 1.7 proline iminopeptidase-family hydrolase compare
EX31_RS06060 +0.3 1.4 phosphate ABC transporter permease PstA compare
EX31_RS10530 +0.3 1.3 anti-adapter protein IraP compare
EX31_RS12780 +0.3 1.3 aspartate carbamoyltransferase regulatory subunit compare
EX31_RS19340 +0.3 1.5 o-succinylbenzoate synthase compare
EX31_RS19655 +0.3 1.6 beta-ketoacyl-ACP synthase I compare


Specific Phenotypes

None in this experiment

For Rahnella sp. WP5 in mixed community experiments

For mixed community Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum across organisms