Experiment set4S145 for Rahnella sp. WP5

Compare to:

NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum

200 most important genes:

  gene name fitness t score description  
EX31_RS23485 -4.2 -2.9 colicin uptake protein TolR compare
EX31_RS07475 -3.1 -2.3 hypothetical protein compare
EX31_RS03220 -2.6 -2.3 Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC compare
EX31_RS10825 -2.6 -1.6 hypothetical protein compare
EX31_RS22430 -2.5 -2.3 hemolysin expression modulator Hha compare
EX31_RS16625 -2.2 -1.7 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
EX31_RS19795 -1.8 -1.7 hypothetical protein compare
EX31_RS12400 -1.8 -1.2 RNA polymerase factor sigma-54 compare
EX31_RS23440 -1.7 -2.8 2-oxoglutarate dehydrogenase E1 component compare
EX31_RS10020 -1.7 -2.5 YciI family protein compare
EX31_RS14405 -1.7 -2.4 lipopolysaccharide heptosyltransferase RfaC compare
EX31_RS14730 -1.7 -1.1 DUF2756 domain-containing protein compare
EX31_RS07415 -1.5 -1.6 bifunctional diguanylate cyclase/phosphodiesterase compare
EX31_RS07135 -1.4 -2.1 hypothetical protein compare
EX31_RS19420 -1.3 -2.4 NADH-quinone oxidoreductase subunit NuoE compare
EX31_RS24385 -1.3 -2.6 dihydroorotase compare
EX31_RS11845 -1.3 -1.0 repressor LexA compare
EX31_RS15655 -1.3 -1.1 hypothetical protein compare
EX31_RS02520 -1.3 -1.8 sigma-54-dependent Fis family transcriptional regulator compare
EX31_RS17275 -1.2 -1.2 DUF72 domain-containing protein compare
EX31_RS12875 -1.2 -2.3 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
EX31_RS10135 -1.1 -2.3 ROK family transcriptional regulator compare
EX31_RS09580 -1.1 -1.7 flagellar motor switch protein FliN compare
EX31_RS02410 -1.1 -1.3 multidrug DMT transporter compare
EX31_RS06340 -1.1 -2.0 thiol peroxidase compare
EX31_RS03790 -1.1 -1.4 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
EX31_RS21020 -1.1 -1.5 D-sedoheptulose 7-phosphate isomerase compare
EX31_RS07380 -1.1 -1.5 redox-regulated ATPase YchF compare
EX31_RS01805 -1.1 -1.0 hypothetical protein compare
EX31_RS02515 -1.1 -1.7 PAS domain-containing protein compare
EX31_RS02325 -1.0 -1.0 GNAT family N-acetyltransferase compare
EX31_RS24730 -1.0 -2.0 YoaH family protein compare
EX31_RS18095 -1.0 -3.6 quinone-dependent dihydroorotate dehydrogenase compare
EX31_RS22750 -1.0 -2.9 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
EX31_RS13335 -1.0 -1.5 transcriptional regulator compare
EX31_RS09535 -1.0 -1.3 flagellar hook-basal body complex protein FliE compare
EX31_RS22695 -1.0 -3.8 phosphoribosylformylglycinamidine cyclo-ligase compare
EX31_RS25910 -1.0 -0.8 hypothetical protein compare
EX31_RS07470 -1.0 -1.4 hypothetical protein compare
EX31_RS18625 -1.0 -1.6 heavy metal-binding domain-containing protein compare
EX31_RS25410 -1.0 -1.1 transposase compare
EX31_RS06800 -0.9 -1.9 ABC transporter permease compare
EX31_RS22145 -0.9 -1.3 phosphatidylglycerophosphatase A compare
EX31_RS24945 -0.9 -1.6 5S ribosomal RNA compare
EX31_RS22625 -0.9 -1.5 5-(carboxyamino)imidazole ribonucleotide mutase compare
EX31_RS03310 -0.9 -2.4 hypothetical protein compare
EX31_RS22620 -0.9 -3.4 5-(carboxyamino)imidazole ribonucleotide synthase compare
EX31_RS09170 -0.9 -1.4 ABC transporter ATP-binding protein compare
EX31_RS07095 -0.9 -2.2 DUF1283 family protein compare
EX31_RS11355 -0.9 -1.9 chemotaxis protein CheY compare
EX31_RS22785 -0.9 -2.1 YpfN family protein compare
EX31_RS06845 -0.9 -1.7 MmgE/PrpD family protein compare
EX31_RS00985 -0.9 -1.3 type VI secretion protein compare
EX31_RS18525 -0.9 -2.0 DNA translocase FtsK compare
EX31_RS10930 -0.9 -2.2 protein DsrB compare
EX31_RS19205 -0.8 -1.7 50S ribosomal protein L25 compare
EX31_RS17710 -0.8 -2.4 hypothetical protein compare
EX31_RS10720 -0.8 -2.6 NAD(P)H:quinone oxidoreductase compare
EX31_RS07590 -0.8 -1.6 bifunctional chorismate mutase/prephenate dehydrogenase compare
EX31_RS09095 -0.8 -1.6 GNAT family N-acetyltransferase compare
EX31_RS14550 -0.8 -0.9 Trk system potassium transporter TrkH compare
EX31_RS11525 -0.8 -1.6 UTP--glucose-1-phosphate uridylyltransferase GalU compare
EX31_RS06380 -0.8 -2.0 YgdI/YgdR family lipoprotein compare
EX31_RS12325 -0.8 -3.3 cytochrome b562 compare
EX31_RS16645 -0.8 -1.3 DUF1471 domain-containing protein compare
EX31_RS22270 -0.8 -1.1 competence protein ComEA compare
EX31_RS10435 -0.8 -2.1 biotin-dependent carboxyltransferase family protein compare
EX31_RS22800 -0.7 -0.9 ArsC family reductase compare
EX31_RS07025 -0.7 -2.8 xanthine dehydrogenase small subunit compare
EX31_RS13745 -0.7 -1.3 pyridoxal kinase PdxY compare
EX31_RS13045 -0.7 -4.5 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
EX31_RS04325 -0.7 -0.6 hypothetical protein compare
EX31_RS18810 -0.7 -2.6 GNAT family N-acetyltransferase compare
EX31_RS19440 -0.7 -4.2 transcriptional regulator LrhA compare
EX31_RS06675 -0.7 -2.5 cellulose biosynthesis protein BcsG compare
EX31_RS08650 -0.7 -2.1 transcriptional regulator ArgR compare
EX31_RS19405 -0.7 -1.2 NADH-quinone oxidoreductase subunit NuoH compare
EX31_RS06695 -0.7 -3.1 cellulose synthase operon protein YhjQ compare
EX31_RS06915 -0.7 -1.2 type I glyceraldehyde-3-phosphate dehydrogenase compare
EX31_RS11540 -0.7 -1.6 dCTP deaminase compare
EX31_RS00380 -0.7 -2.6 ABC transporter ATP-binding protein compare
EX31_RS08140 -0.7 -1.3 bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE compare
EX31_RS07280 -0.7 -2.4 cytochrome c compare
EX31_RS23755 -0.7 -1.7 molybdopterin synthase sulfur carrier subunit compare
EX31_RS07440 -0.7 -1.1 urea carboxylase-associated family protein compare
EX31_RS02385 -0.7 -0.8 hypothetical protein compare
EX31_RS10955 -0.7 -1.6 AI-2E family transporter compare
EX31_RS23175 -0.7 -3.0 amino acid ABC transporter substrate-binding protein compare
EX31_RS21895 -0.7 -5.0 phosphoribosylformylglycinamidine synthase compare
EX31_RS05200 -0.7 -1.7 DoxX family protein compare
EX31_RS18255 -0.7 -1.1 3-phosphoserine/phosphohydroxythreonine transaminase compare
EX31_RS06955 -0.7 -1.7 hypothetical protein compare
EX31_RS06945 -0.7 -1.6 helix-turn-helix domain-containing protein compare
EX31_RS09500 -0.7 -2.2 hypothetical protein compare
EX31_RS06985 -0.6 -1.0 iron export ABC transporter permease subunit FetB compare
EX31_RS09195 -0.6 -2.7 gamma-glutamyltransferase family protein compare
EX31_RS02225 -0.6 -2.0 hypothetical protein compare
EX31_RS23560 -0.6 -1.2 phosphate starvation-inducible protein compare
EX31_RS15530 -0.6 -0.8 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit compare
EX31_RS02525 -0.6 -2.7 ABC transporter permease compare
EX31_RS00905 -0.6 -2.0 ester cyclase compare
EX31_RS06795 -0.6 -2.1 ABC transporter ATP-binding protein compare
EX31_RS07115 -0.6 -1.0 cysteine dioxygenase compare
EX31_RS03190 -0.6 -1.4 hypothetical protein compare
EX31_RS00355 -0.6 -1.8 mandelate racemase compare
EX31_RS17835 -0.6 -0.7 PTS transporter subunit EIIB compare
EX31_RS09135 -0.6 -2.5 MFS transporter compare
EX31_RS16855 -0.6 -3.7 phosphoribosylamine--glycine ligase compare
EX31_RS20450 -0.6 -2.5 IMP dehydrogenase compare
EX31_RS15870 -0.6 -1.7 glutamate--ammonia ligase compare
EX31_RS07300 -0.6 -1.8 tetratricopeptide repeat-containing protein compare
EX31_RS23245 -0.6 -4.8 asparagine synthase B compare
EX31_RS11205 -0.6 -1.9 chemotaxis protein CheV compare
EX31_RS14310 -0.6 -1.5 6-phosphofructokinase compare
EX31_RS01310 -0.6 -1.2 DUF2493 domain-containing protein compare
EX31_RS05145 -0.6 -2.8 inorganic phosphate transporter PitA compare
EX31_RS25690 -0.6 -0.9 tyrosine-type recombinase/integrase compare
EX31_RS01530 -0.6 -0.4 hypothetical protein compare
EX31_RS25630 -0.6 -1.6 DUF3606 domain-containing protein compare
EX31_RS23875 -0.6 -1.1 DUF1471 domain-containing protein compare
EX31_RS11470 -0.6 -1.6 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
EX31_RS07225 -0.6 -1.5 membrane dipeptidase compare
EX31_RS00655 -0.6 -1.8 pyrroloquinoline quinone biosynthesis protein PqqE compare
EX31_RS10340 -0.6 -1.8 GNAT family N-acetyltransferase compare
EX31_RS22490 -0.6 -2.9 pleiotropic regulatory protein RsmS compare
EX31_RS07050 -0.6 -1.5 sugar ABC transporter permease compare
EX31_RS15875 -0.5 -4.0 nitrogen regulation protein NR(II) compare
EX31_RS19570 -0.5 -3.5 amidophosphoribosyltransferase compare
EX31_RS15670 -0.5 -1.5 phage-shock protein compare
EX31_RS19150 -0.5 -2.4 hypothetical protein compare
EX31_RS15260 -0.5 -1.4 hypothetical protein compare
EX31_RS13795 -0.5 -2.1 aldo/keto reductase family oxidoreductase compare
EX31_RS23420 -0.5 -1.7 succinate dehydrogenase cytochrome b556 subunit compare
EX31_RS02530 -0.5 -0.9 ABC transporter ATP-binding protein compare
EX31_RS17245 -0.5 -1.1 hypothetical protein compare
EX31_RS18090 -0.5 -2.0 cell division protein ZapC compare
EX31_RS26100 -0.5 -1.9 AraC family transcriptional regulator compare
EX31_RS10190 -0.5 -1.8 glycosyltransferase compare
EX31_RS06990 -0.5 -1.2 GntR family transcriptional regulator compare
EX31_RS01115 -0.5 -1.9 ABC-F family ATP-binding cassette domain-containing protein compare
EX31_RS00530 -0.5 -2.5 ParD-like family protein compare
EX31_RS16635 -0.5 -2.0 gluconate transporter compare
EX31_RS09445 -0.5 -3.1 flagella biosynthesis regulatory protein FliZ compare
EX31_RS22405 -0.5 -1.9 hypothetical protein compare
EX31_RS25990 -0.5 -1.7 hypothetical protein compare
EX31_RS01970 -0.5 -0.4 hypothetical protein compare
EX31_RS12825 -0.5 -2.7 ornithine carbamoyltransferase compare
EX31_RS02740 -0.5 -0.4 oxidative damage protection protein compare
EX31_RS17740 -0.5 -2.3 RluA family pseudouridine synthase compare
EX31_RS09950 -0.5 -2.8 PHP domain-containing protein compare
EX31_RS08515 -0.5 -4.1 lipoprotein NlpI compare
EX31_RS06980 -0.5 -1.3 iron ABC transporter ATP-binding protein FetA compare
EX31_RS19385 -0.5 -1.2 NADH-quinone oxidoreductase subunit L compare
EX31_RS20890 -0.5 -0.6 hypothetical protein compare
EX31_RS02585 -0.5 -2.7 nucleoside hydrolase compare
EX31_RS06690 -0.5 -1.1 hypothetical protein compare
EX31_RS04685 -0.5 -2.2 hypothetical protein compare
EX31_RS06585 -0.5 -0.9 DUF2501 domain-containing protein compare
EX31_RS09290 -0.5 -1.0 hypothetical protein compare
EX31_RS06400 -0.5 -3.0 chondroitin lyase compare
EX31_RS09640 -0.5 -2.1 30S ribosomal protein S6--L-glutamate ligase compare
EX31_RS26010 -0.5 -1.6 YnhF family membrane protein compare
EX31_RS13940 -0.5 -2.0 kinase/pyrophosphorylase compare
EX31_RS21440 -0.5 -1.7 arginine exporter ArgO compare
EX31_RS01280 -0.5 -0.5 SgcJ/EcaC family oxidoreductase compare
EX31_RS14100 -0.5 -2.0 hexitol phosphatase HxpB compare
EX31_RS17985 -0.5 -1.4 acylphosphatase compare
EX31_RS06595 -0.5 -0.8 electron transport complex subunit E compare
EX31_RS10000 -0.5 -2.0 UPF0259 family protein compare
EX31_RS23450 -0.5 -1.1 ADP-forming succinate--CoA ligase subunit beta compare
EX31_RS17285 -0.5 -1.1 carboxy-S-adenosyl-L-methionine synthase CmoA compare
EX31_RS16265 -0.5 -2.4 hypothetical protein compare
EX31_RS08210 -0.5 -1.7 hypothetical protein compare
EX31_RS11065 -0.5 -2.0 TetR/AcrR family transcriptional regulator compare
EX31_RS09935 -0.5 -1.6 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
EX31_RS10815 -0.5 -1.1 oxidoreductase compare
EX31_RS10105 -0.5 -1.4 patatin-like phospholipase RssA compare
EX31_RS15880 -0.5 -2.2 nitrogen regulation protein NR(I) compare
EX31_RS08150 -0.5 -3.5 inorganic triphosphatase compare
EX31_RS01770 -0.5 -1.3 hypothetical protein compare
EX31_RS17955 -0.5 -1.1 SDR family oxidoreductase compare
EX31_RS00510 -0.5 -1.2 TetR/AcrR family transcriptional regulator compare
EX31_RS01615 -0.4 -0.9 DNA breaking-rejoining protein compare
EX31_RS09940 -0.4 -2.3 23S rRNA pseudouridine(2605) synthase RluB compare
EX31_RS09175 -0.4 -1.6 ATP-binding cassette domain-containing protein compare
EX31_RS16860 -0.4 -3.5 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
EX31_RS17995 -0.4 -1.2 heat shock protein HspQ compare
EX31_RS13275 -0.4 -3.0 diaminopimelate decarboxylase compare
EX31_RS14190 -0.4 -3.2 N-acetyl-gamma-glutamyl-phosphate reductase compare
EX31_RS10145 -0.4 -1.5 ABC transporter permease compare
EX31_RS02230 -0.4 -1.5 SDR family oxidoreductase compare
EX31_RS06625 -0.4 -1.7 DUF2569 domain-containing protein compare
EX31_RS04390 -0.4 -0.5 DNA polymerase III subunit chi compare
EX31_RS23320 -0.4 -1.4 alpha-D-glucose phosphate-specific phosphoglucomutase compare
EX31_RS00465 -0.4 -1.7 efflux RND transporter periplasmic adaptor subunit compare
EX31_RS09960 -0.4 -2.0 glutamine amidotransferase compare
EX31_RS06735 -0.4 -0.9 HutD family protein compare
EX31_RS16675 -0.4 -0.9 histidine utilization repressor compare
EX31_RS10880 -0.4 -1.9 glycerol dehydrogenase compare
EX31_RS01065 -0.4 -1.5 glycine zipper family protein compare


Specific Phenotypes

None in this experiment

For Rahnella sp. WP5 in mixed community experiments

For mixed community Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum across organisms