Experiment set4S145 for Rahnella sp. WP5

Compare to:

NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum

200 most detrimental genes:

  gene name fitness t score description  
EX31_RS11185 +2.0 9.1 MBL fold metallo-hydrolase compare
EX31_RS10090 +1.8 7.5 NAD-dependent epimerase compare
EX31_RS07955 +1.8 15.8 GTP diphosphokinase compare
EX31_RS15055 +1.5 14.4 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
EX31_RS08130 +1.5 2.5 accessory factor UbiK family protein compare
EX31_RS23990 +1.5 1.3 SDR family NAD(P)-dependent oxidoreductase compare
EX31_RS06810 +1.5 4.1 LysR family transcriptional regulator compare
EX31_RS11500 +1.5 4.1 glycosyltransferase family 2 protein compare
EX31_RS20935 +1.4 2.3 hypothetical protein compare
EX31_RS05485 +1.4 9.6 endoglucanase compare
EX31_RS03250 +1.3 8.9 RNA polymerase-binding protein DksA compare
EX31_RS20480 +1.3 7.4 hypothetical protein compare
EX31_RS11480 +1.2 5.8 ABC transporter permease compare
EX31_RS05785 +1.2 6.2 superoxide dismutase [Mn] compare
EX31_RS01990 +1.2 3.1 type VI secretion system baseplate subunit TssE compare
EX31_RS14435 +1.1 6.3 glycosyltransferase family 4 protein compare
EX31_RS22245 +1.1 2.6 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
EX31_RS13870 +1.1 3.5 pyruvate kinase PykF compare
EX31_RS24065 +1.0 3.4 pyrimidine utilization flavin reductase protein F compare
EX31_RS11485 +1.0 5.9 ABC transporter ATP-binding protein compare
EX31_RS14445 +1.0 5.4 glycosyltransferase family 2 protein compare
EX31_RS04320 +1.0 2.2 hypothetical protein compare
EX31_RS10325 +1.0 4.2 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
EX31_RS20190 +0.9 1.3 PTS glucose transporter subunit IIA compare
EX31_RS23315 +0.9 5.1 replication initiation negative regulator SeqA compare
EX31_RS09775 +0.9 1.1 (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase compare
EX31_RS08745 +0.9 1.2 50S ribosomal protein L9 compare
EX31_RS20670 +0.9 1.3 RNA chaperone/antiterminator CspA compare
EX31_RS10865 +0.9 2.5 hypothetical protein compare
EX31_RS11490 +0.9 3.0 glycosyltransferase compare
EX31_RS02310 +0.9 1.4 hypothetical protein compare
EX31_RS23490 +0.8 1.9 cell envelope integrity protein TolA compare
EX31_RS14415 +0.8 5.1 sugar glycosyltransferase compare
EX31_RS05855 +0.8 2.4 glycine--tRNA ligase subunit beta compare
EX31_RS09895 +0.8 2.6 type I DNA topoisomerase compare
EX31_RS15910 +0.8 5.0 thiol:disulfide interchange protein DsbA compare
EX31_RS26040 +0.8 2.0 hypothetical protein compare
EX31_RS24655 +0.8 2.9 hypothetical protein compare
EX31_RS25590 +0.8 1.5 hypothetical protein compare
EX31_RS19085 +0.8 4.5 YkgJ family cysteine cluster protein compare
EX31_RS10030 +0.8 1.6 YciY family protein compare
EX31_RS14605 +0.8 2.6 Sec-independent protein translocase subunit TatB compare
EX31_RS11510 +0.7 3.2 dTDP-4-dehydrorhamnose 3,5-epimerase compare
EX31_RS09205 +0.7 1.9 siderophore-iron reductase FhuF compare
EX31_RS24375 +0.7 1.7 biofilm formation regulator BssS compare
EX31_RS07825 +0.7 6.2 RNA polymerase sigma factor RpoS compare
EX31_RS14610 +0.7 2.9 twin-arginine translocase subunit TatE compare
EX31_RS13775 +0.7 1.9 transcriptional regulator SlyA compare
EX31_RS17640 +0.7 2.4 TetR/AcrR family transcriptional regulator compare
EX31_RS01960 +0.7 2.9 DUF2931 family protein compare
EX31_RS01710 +0.7 1.5 hypothetical protein compare
EX31_RS23495 +0.7 3.1 Tol-Pal system protein TolB compare
EX31_RS14345 +0.7 2.4 protein-export chaperone SecB compare
EX31_RS06485 +0.7 1.9 YdbL family protein compare
EX31_RS01260 +0.7 1.7 YebG family protein compare
EX31_RS12175 +0.7 2.1 DNA-binding transcriptional regulator Fis compare
EX31_RS25895 +0.7 1.7 DinI-like family protein compare
EX31_RS16740 +0.7 3.1 transcriptional regulator compare
EX31_RS20620 +0.6 1.8 two-component system QseEF-associated lipoprotein QseG compare
EX31_RS24490 +0.6 2.6 penicillin-binding protein activator LpoB compare
EX31_RS01590 +0.6 1.7 phage tail assembly protein T compare
EX31_RS01330 +0.6 2.1 porin compare
EX31_RS16285 +0.6 1.5 conjugal transfer protein compare
EX31_RS23745 +0.6 2.2 molybdenum cofactor biosynthesis protein B compare
EX31_RS15540 +0.6 1.2 SDR family oxidoreductase compare
EX31_RS18450 +0.6 1.1 hypothetical protein compare
EX31_RS09840 +0.6 1.7 L-ribulose-5-phosphate 4-epimerase compare
EX31_RS02885 +0.6 3.3 glycosyltransferase family 2 protein compare
EX31_RS14620 +0.6 0.9 SCP2 domain-containing protein compare
EX31_RS09425 +0.6 1.8 L-cystine ABC transporter ATP-binding protein YecC compare
EX31_RS18670 +0.6 4.0 outer membrane permeability protein SanA compare
EX31_RS13640 +0.6 2.7 L-valine transporter subunit YgaH compare
EX31_RS22715 +0.6 1.6 arsenate reductase (glutaredoxin) compare
EX31_RS12500 +0.6 5.1 stringent starvation protein A compare
EX31_RS09520 +0.6 1.8 hypothetical protein compare
EX31_RS17515 +0.6 2.8 dihydrodipicolinate synthase family protein compare
EX31_RS09340 +0.6 1.6 HigA family addiction module antidote protein compare
EX31_RS15585 +0.6 1.7 ABC transporter permease compare
EX31_RS00575 +0.6 2.0 DUF554 domain-containing protein compare
EX31_RS19320 +0.6 1.9 nicotinamide mononucleotide deamidase-related protein YfaY compare
EX31_RS04340 +0.6 2.7 tyrosine-type recombinase/integrase compare
EX31_RS14410 +0.6 5.0 glycosyltransferase family 9 protein compare
EX31_RS20925 +0.6 1.0 hypothetical protein compare
EX31_RS02765 +0.5 2.2 acetyltransferase compare
EX31_RS25300 +0.5 1.1 YqaE/Pmp3 family membrane protein compare
EX31_RS25400 +0.5 1.6 transcriptional regulator compare
EX31_RS02700 +0.5 1.4 YggU family protein compare
EX31_RS09790 +0.5 1.4 autoinducer 2 ABC transporter permease LsrD compare
EX31_RS11335 +0.5 1.0 flagellar protein FlhE compare
EX31_RS06775 +0.5 1.9 iron-containing alcohol dehydrogenase family protein compare
EX31_RS10490 +0.5 1.4 putative selenium delivery protein YdfZ compare
EX31_RS19375 +0.5 2.2 NADH-quinone oxidoreductase subunit NuoN compare
EX31_RS25720 +0.5 1.9 hypothetical protein compare
EX31_RS04295 +0.5 2.0 hypothetical protein compare
EX31_RS19700 +0.5 2.2 phosphohistidine phosphatase SixA compare
EX31_RS01655 +0.5 1.8 hypothetical protein compare
EX31_RS24765 +0.5 1.5 non-heme ferritin compare
EX31_RS19230 +0.5 1.7 DinI family protein compare
EX31_RS08595 +0.5 1.6 transcription elongation factor GreA compare
EX31_RS17930 +0.5 2.7 cupin compare
EX31_RS10035 +0.5 1.0 cardiolipin synthase compare
EX31_RS16960 +0.5 2.3 ABC transporter substrate-binding protein compare
EX31_RS16555 +0.5 1.7 PTS sugar transporter subunit IIB compare
EX31_RS13875 +0.5 2.7 major outer membrane lipoprotein compare
EX31_RS15525 +0.5 2.5 nitrogen assimilation transcriptional regulator compare
EX31_RS17265 +0.5 1.5 hypothetical protein compare
EX31_RS19415 +0.5 2.0 NADH-quinone oxidoreductase subunit NuoF compare
EX31_RS16705 +0.5 2.0 ABC transporter permease compare
EX31_RS18405 +0.5 2.7 hypothetical protein compare
EX31_RS06650 +0.5 1.9 L-arabinose ABC transporter ATP-binding protein AraG compare
EX31_RS10750 +0.5 1.7 chromate transporter compare
EX31_RS18015 +0.5 3.3 DNA helicase IV compare
EX31_RS01180 +0.5 1.9 two-component system response regulator DcuR compare
EX31_RS26025 +0.5 0.8 conjugal transfer protein TraK compare
EX31_RS18325 +0.5 1.6 baseplate assembly protein compare
EX31_RS01700 +0.5 0.8 chromosome partitioning protein ParB compare
EX31_RS09550 +0.5 0.6 flagellar assembly protein FliH compare
EX31_RS17875 +0.5 2.5 DUF496 family protein compare
EX31_RS14160 +0.5 2.8 HTH-type transcriptional repressor FabR compare
EX31_RS24480 +0.5 1.3 purine nucleoside phosphoramidase compare
EX31_RS23160 +0.5 1.6 amino acid ABC transporter ATP-binding protein compare
EX31_RS25045 +0.5 2.4 IS5 family transposase compare
EX31_RS24145 +0.5 2.6 UvrY/SirA/GacA family response regulator transcription factor compare
EX31_RS00600 +0.5 1.2 DUF1471 domain-containing protein compare
EX31_RS01290 +0.5 2.0 LysR family transcriptional regulator compare
EX31_RS02775 +0.5 1.1 hypothetical protein compare
EX31_RS07445 +0.5 1.6 amino acid ABC transporter permease compare
EX31_RS02560 +0.5 0.7 hypothetical protein compare
EX31_RS08455 +0.5 2.8 hypothetical protein compare
EX31_RS12515 +0.5 4.5 glutamate synthase large subunit compare
EX31_RS05730 +0.5 1.2 isochorismatase family protein compare
EX31_RS00130 +0.5 0.9 GGDEF domain-containing protein compare
EX31_RS23040 +0.5 2.1 helix-turn-helix transcriptional regulator compare
EX31_RS02925 +0.5 3.4 polysaccharide biosynthesis tyrosine autokinase compare
EX31_RS01305 +0.5 1.8 trehalose-phosphatase compare
EX31_RS09605 +0.5 1.4 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC compare
EX31_RS01865 +0.5 2.0 DotU family type IV/VI secretion system protein compare
EX31_RS09625 +0.5 1.6 putrescine ABC transporter ATP-binding subunit PotG compare
EX31_RS01535 +0.5 1.6 hypothetical protein compare
EX31_RS00630 +0.5 0.9 iron dicitrate ABC transporter ATP-binding protein compare
EX31_RS15975 +0.5 1.1 peptide deformylase compare
EX31_RS08820 +0.5 2.5 RNA chaperone Hfq compare
EX31_RS20530 +0.5 2.3 nucleoside-diphosphate kinase compare
EX31_RS13975 +0.5 2.0 EAL domain-containing protein compare
EX31_RS07460 +0.5 1.0 NAD(P)-binding domain-containing protein compare
EX31_RS24190 +0.5 1.6 DNA gyrase inhibitor compare
EX31_RS09100 +0.5 1.0 uroporphyrinogen-III C-methyltransferase compare
EX31_RS14005 +0.5 1.6 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
EX31_RS01605 +0.5 1.2 tail protein compare
EX31_RS03340 +0.5 0.9 transcriptional regulator GutM compare
EX31_RS02895 +0.5 2.9 hypothetical protein compare
EX31_RS09350 +0.5 1.3 ATP-binding cassette domain-containing protein compare
EX31_RS02890 +0.4 3.0 lipopolysaccharide biosynthesis protein compare
EX31_RS10650 +0.4 2.2 lysine N(6)-hydroxylase/L-ornithine N(5)-oxygenase family protein compare
EX31_RS07155 +0.4 2.2 exoribonuclease II compare
EX31_RS17290 +0.4 1.5 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB compare
EX31_RS00935 +0.4 1.6 LysR family transcriptional regulator compare
EX31_RS26080 +0.4 1.5 hypothetical protein compare
EX31_RS14600 +0.4 2.2 Sec-independent protein translocase subunit TatC compare
EX31_RS18445 +0.4 1.1 DUF2732 domain-containing protein compare
EX31_RS25645 +0.4 0.5 K(+)-transporting ATPase subunit F compare
EX31_RS01445 +0.4 1.1 J domain-containing protein compare
EX31_RS05010 +0.4 3.9 glycogen synthase GlgA compare
EX31_RS09250 +0.4 1.6 ABC transporter permease subunit compare
EX31_RS03850 +0.4 2.5 SMP-30/gluconolactonase/LRE family protein compare
EX31_RS06145 +0.4 2.4 FMN-binding protein MioC compare
EX31_RS23725 +0.4 1.0 DUF2132 domain-containing protein compare
EX31_RS02910 +0.4 1.8 hypothetical protein compare
EX31_RS09590 +0.4 1.2 flagellar type III secretion system pore protein FliP compare
EX31_RS10580 +0.4 1.8 septum site-determining protein MinC compare
EX31_RS03315 +0.4 1.0 type VI secretion system tube protein Hcp compare
EX31_RS00635 +0.4 0.8 hypothetical protein compare
EX31_RS01695 +0.4 0.7 RusA family crossover junction endodeoxyribonuclease compare
EX31_RS18785 +0.4 1.5 DUF2384 domain-containing protein compare
EX31_RS01560 +0.4 1.8 hypothetical protein compare
EX31_RS25070 +0.4 1.5 DUF551 domain-containing protein compare
EX31_RS05000 +0.4 1.0 glycerol-3-phosphate dehydrogenase compare
EX31_RS01690 +0.4 1.7 KilA-N domain-containing protein compare
EX31_RS17785 +0.4 1.7 [citrate (pro-3S)-lyase] ligase compare
EX31_RS13815 +0.4 0.3 ribonuclease T compare
EX31_RS20845 +0.4 1.3 hypothetical protein compare
EX31_RS01545 +0.4 1.0 hypothetical protein compare
EX31_RS24260 +0.4 0.8 YceK/YidQ family lipoprotein compare
EX31_RS20700 +0.4 0.6 GNAT family N-acetyltransferase compare
EX31_RS02020 +0.4 1.5 MFS transporter compare
EX31_RS24280 +0.4 1.8 hypothetical protein compare
EX31_RS24820 +0.4 2.0 amidohydrolase compare
EX31_RS18435 +0.4 1.9 DUF5405 family protein compare
EX31_RS06410 +0.4 1.7 FadR family transcriptional regulator compare
EX31_RS14430 +0.4 3.3 putative lipopolysaccharide heptosyltransferase III compare
EX31_RS06895 +0.4 1.7 HlyD family secretion protein compare
EX31_RS01550 +0.4 2.3 hypothetical protein compare
EX31_RS12805 +0.4 2.6 carbamate kinase compare
EX31_RS13845 +0.4 2.7 cyclopropane fatty acyl phospholipid synthase compare
EX31_RS11600 +0.4 2.1 CocE/NonD family hydrolase compare
EX31_RS00315 +0.4 1.2 heme-binding protein compare
EX31_RS11825 +0.4 0.9 chorismate lyase compare
EX31_RS10565 +0.4 1.9 fumarylacetoacetate hydrolase family protein compare
EX31_RS25555 +0.4 1.0 GpE family phage tail protein compare
EX31_RS10915 +0.4 2.3 glucuronyl hydrolase compare


Specific Phenotypes

None in this experiment

For Rahnella sp. WP5 in mixed community experiments

For mixed community Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum across organisms