Experiment set4S143 for Rahnella sp. WP5

Compare to:

NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum

200 most important genes:

  gene name fitness t score description  
EX31_RS25365 -4.2 -2.7 50S ribosomal protein L31 compare
EX31_RS23485 -4.1 -2.8 colicin uptake protein TolR compare
EX31_RS25415 -2.8 -1.8 helix-turn-helix domain-containing protein compare
EX31_RS23440 -2.7 -3.1 2-oxoglutarate dehydrogenase E1 component compare
EX31_RS08745 -2.5 -2.3 50S ribosomal protein L9 compare
EX31_RS22430 -2.4 -2.3 hemolysin expression modulator Hha compare
EX31_RS02530 -1.9 -2.5 ABC transporter ATP-binding protein compare
EX31_RS05825 -1.9 -1.8 mannitol-1-phosphate 5-dehydrogenase compare
EX31_RS16725 -1.8 -2.2 phytanoyl-CoA dioxygenase compare
EX31_RS03790 -1.8 -2.2 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
EX31_RS15155 -1.6 -3.1 diaminopimelate epimerase compare
EX31_RS11540 -1.6 -2.7 dCTP deaminase compare
EX31_RS07470 -1.5 -1.9 hypothetical protein compare
EX31_RS11525 -1.5 -2.5 UTP--glucose-1-phosphate uridylyltransferase GalU compare
EX31_RS19505 -1.5 -2.4 PTS sugar transporter subunit IIB compare
EX31_RS23490 -1.5 -1.9 cell envelope integrity protein TolA compare
EX31_RS18370 -1.4 -1.5 tail protein X compare
EX31_RS02515 -1.4 -1.6 PAS domain-containing protein compare
EX31_RS25555 -1.4 -2.2 GpE family phage tail protein compare
EX31_RS24220 -1.3 -1.7 hypothetical protein compare
EX31_RS16645 -1.3 -2.0 DUF1471 domain-containing protein compare
EX31_RS03570 -1.3 -1.5 DUF721 domain-containing protein compare
EX31_RS23125 -1.2 -2.5 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
EX31_RS03645 -1.2 -1.9 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
EX31_RS23320 -1.2 -3.1 alpha-D-glucose phosphate-specific phosphoglucomutase compare
EX31_RS16655 -1.2 -1.2 hypothetical protein compare
EX31_RS18255 -1.1 -2.2 3-phosphoserine/phosphohydroxythreonine transaminase compare
EX31_RS12875 -1.1 -2.2 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
EX31_RS25725 -1.1 -2.1 hypothetical protein compare
EX31_RS02520 -1.1 -1.6 sigma-54-dependent Fis family transcriptional regulator compare
EX31_RS01885 -1.1 -2.2 type IV secretion protein Rhs compare
EX31_RS07135 -1.1 -1.7 hypothetical protein compare
EX31_RS12400 -1.1 -1.4 RNA polymerase factor sigma-54 compare
EX31_RS24945 -1.0 -1.9 5S ribosomal RNA compare
EX31_RS13045 -1.0 -6.2 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
EX31_RS18540 -1.0 -0.7 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
EX31_RS09080 -1.0 -0.9 LysR family transcriptional regulator compare
EX31_RS17835 -1.0 -1.7 PTS transporter subunit EIIB compare
EX31_RS18010 -1.0 -2.0 methylglyoxal synthase compare
EX31_RS11010 -0.9 -0.9 DgsA anti-repressor MtfA compare
EX31_RS11110 -0.9 -1.1 RidA family protein compare
EX31_RS01085 -0.9 -1.3 ATP-binding cassette domain-containing protein compare
EX31_RS06225 -0.9 -1.1 hypothetical protein compare
EX31_RS16625 -0.9 -1.0 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
EX31_RS07105 -0.9 -2.2 DUF3811 domain-containing protein compare
EX31_RS06895 -0.9 -2.7 HlyD family secretion protein compare
EX31_RS09290 -0.9 -1.0 hypothetical protein compare
EX31_RS19440 -0.9 -5.3 transcriptional regulator LrhA compare
EX31_RS09820 -0.9 -2.7 fructose-6-phosphate aldolase compare
EX31_RS14320 -0.8 -1.6 envelope stress response regulator transcription factor CpxR compare
EX31_RS15880 -0.8 -4.2 nitrogen regulation protein NR(I) compare
EX31_RS22695 -0.8 -3.3 phosphoribosylformylglycinamidine cyclo-ligase compare
EX31_RS21190 -0.8 -1.7 ribonuclease HI compare
EX31_RS01805 -0.8 -1.1 hypothetical protein compare
EX31_RS07380 -0.8 -1.2 redox-regulated ATPase YchF compare
EX31_RS00580 -0.8 -2.0 LysR family transcriptional regulator compare
EX31_RS07245 -0.8 -2.0 ABC transporter ATP-binding protein compare
EX31_RS11315 -0.8 -1.8 flagellar basal body rod protein FlgB compare
EX31_RS09225 -0.8 -2.5 iron-containing alcohol dehydrogenase family protein compare
EX31_RS06915 -0.8 -1.7 type I glyceraldehyde-3-phosphate dehydrogenase compare
EX31_RS05040 -0.8 -3.4 helix-turn-helix domain-containing protein compare
EX31_RS00255 -0.7 -3.2 hypothetical protein compare
EX31_RS19375 -0.7 -2.1 NADH-quinone oxidoreductase subunit NuoN compare
EX31_RS23050 -0.7 -2.1 GNAT family N-acetyltransferase compare
EX31_RS06690 -0.7 -2.2 hypothetical protein compare
EX31_RS06485 -0.7 -0.8 YdbL family protein compare
EX31_RS09855 -0.7 -1.6 orotidine-5'-phosphate decarboxylase compare
EX31_RS22260 -0.7 -2.8 DNA-binding protein HU-beta compare
EX31_RS23895 -0.7 -2.1 TetR/AcrR family transcriptional regulator compare
EX31_RS07385 -0.7 -2.8 HNH nuclease family protein compare
EX31_RS03220 -0.7 -1.4 Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC compare
EX31_RS24070 -0.7 -2.1 malonic semialdehyde reductase compare
EX31_RS24390 -0.7 -1.5 antibiotic biosynthesis monooxygenase compare
EX31_RS08130 -0.7 -0.8 accessory factor UbiK family protein compare
EX31_RS10720 -0.7 -1.8 NAD(P)H:quinone oxidoreductase compare
EX31_RS23945 -0.7 -2.6 ABC transporter ATP-binding protein compare
EX31_RS09920 -0.7 -1.5 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
EX31_RS24025 -0.7 -3.1 VOC family protein compare
EX31_RS22005 -0.7 -1.6 phosphotransferase compare
EX31_RS14770 -0.6 -2.0 hypothetical protein compare
EX31_RS25645 -0.6 -1.3 K(+)-transporting ATPase subunit F compare
EX31_RS09095 -0.6 -2.2 GNAT family N-acetyltransferase compare
EX31_RS16555 -0.6 -1.7 PTS sugar transporter subunit IIB compare
EX31_RS10010 -0.6 -2.3 acyl-CoA thioester hydrolase YciA compare
EX31_RS11650 -0.6 -2.0 glucose 1-dehydrogenase compare
EX31_RS06365 -0.6 -2.6 zinc transporter ZntB compare
EX31_RS00610 -0.6 -2.0 heme utilization cystosolic carrier protein HutX compare
EX31_RS10865 -0.6 -1.4 hypothetical protein compare
EX31_RS06590 -0.6 -2.2 endonuclease III compare
EX31_RS24555 -0.6 -3.6 two-component system sensor histidine kinase PhoQ compare
EX31_RS11840 -0.6 -4.2 diacylglycerol kinase compare
EX31_RS22335 -0.6 -2.2 MGMT family protein compare
EX31_RS15870 -0.6 -1.5 glutamate--ammonia ligase compare
EX31_RS09120 -0.6 -1.7 nitrate ABC transporter permease compare
EX31_RS06500 -0.6 -2.4 serine protease compare
EX31_RS06845 -0.6 -2.3 MmgE/PrpD family protein compare
EX31_RS01390 -0.6 -0.9 hypothetical protein compare
EX31_RS11675 -0.6 -1.6 Holliday junction branch migration protein RuvA compare
EX31_RS14095 -0.6 -2.0 yfeABCD regulator yfeE compare
EX31_RS09565 -0.6 -0.9 flagellar hook-length control protein FliK compare
EX31_RS06725 -0.6 -2.4 histidine utilization repressor compare
EX31_RS20450 -0.6 -2.4 IMP dehydrogenase compare
EX31_RS10035 -0.6 -0.7 cardiolipin synthase compare
EX31_RS06990 -0.6 -1.9 GntR family transcriptional regulator compare
EX31_RS04390 -0.6 -1.1 DNA polymerase III subunit chi compare
EX31_RS13815 -0.6 -0.6 ribonuclease T compare
EX31_RS15685 -0.6 -2.1 phage shock protein PspA compare
EX31_RS25105 -0.6 -0.8 DUF2474 domain-containing protein compare
EX31_RS12255 -0.6 -3.9 ribonuclease G compare
EX31_RS08515 -0.6 -4.6 lipoprotein NlpI compare
EX31_RS25690 -0.6 -1.3 tyrosine-type recombinase/integrase compare
EX31_RS11225 -0.6 -2.5 MsnO8 family LLM class oxidoreductase compare
EX31_RS19205 -0.6 -0.9 50S ribosomal protein L25 compare
EX31_RS02525 -0.6 -2.8 ABC transporter permease compare
EX31_RS10970 -0.6 -1.8 DUF979 domain-containing protein compare
EX31_RS21850 -0.5 -0.5 pyridoxine 5'-phosphate synthase compare
EX31_RS06435 -0.5 -1.2 DUF333 domain-containing protein compare
EX31_RS21400 -0.5 -2.2 transketolase compare
EX31_RS01225 -0.5 -1.2 glutaredoxin-dependent arsenate reductase compare
EX31_RS07055 -0.5 -2.0 carbohydrate ABC transporter permease compare
EX31_RS09585 -0.5 -1.0 flagellar biosynthetic protein FliO compare
EX31_RS00760 -0.5 -1.9 glutathione S-transferase compare
EX31_RS07445 -0.5 -1.6 amino acid ABC transporter permease compare
EX31_RS25020 -0.5 -1.5 hypothetical protein compare
EX31_RS00605 -0.5 -1.9 NAD(P)H-binding protein compare
EX31_RS17025 -0.5 -1.3 FadR family transcriptional regulator compare
EX31_RS06055 -0.5 -1.0 phosphate ABC transporter ATP-binding protein PstB compare
EX31_RS15615 -0.5 -2.7 high-affinity branched-chain amino acid ABC transporter permease LivM compare
EX31_RS08120 -0.5 -2.1 hypothetical protein compare
EX31_RS21570 -0.5 -1.0 hypothetical protein compare
EX31_RS12540 -0.5 -1.6 YraN family protein compare
EX31_RS25130 -0.5 -1.5 DUF1328 domain-containing protein compare
EX31_RS00985 -0.5 -1.1 type VI secretion protein compare
EX31_RS23735 -0.5 -1.8 uridine diphosphate-N-acetylglucosamine-binding protein YvcK compare
EX31_RS24265 -0.5 -1.8 secY/secA suppressor protein compare
EX31_RS19405 -0.5 -1.1 NADH-quinone oxidoreductase subunit NuoH compare
EX31_RS01955 -0.5 -1.0 DUF2931 family protein compare
EX31_RS11845 -0.5 -0.5 repressor LexA compare
EX31_RS01920 -0.5 -0.9 hypothetical protein compare
EX31_RS06275 -0.5 -1.1 D-hexose-6-phosphate mutarotase compare
EX31_RS18090 -0.5 -1.5 cell division protein ZapC compare
EX31_RS01385 -0.5 -2.7 EamA family transporter compare
EX31_RS07785 -0.5 -0.5 carbon storage regulator CsrA compare
EX31_RS07165 -0.5 -1.7 2-hydroxyacid dehydrogenase compare
EX31_RS06865 -0.5 -1.5 pyridoxal phosphate-dependent aminotransferase compare
EX31_RS25295 -0.5 -0.8 GhoT/OrtT family toxin compare
EX31_RS21895 -0.5 -3.7 phosphoribosylformylglycinamidine synthase compare
EX31_RS09985 -0.5 -1.8 BON domain-containing protein compare
EX31_RS25880 -0.5 -1.9 hypothetical protein compare
EX31_RS06675 -0.5 -1.9 cellulose biosynthesis protein BcsG compare
EX31_RS21320 -0.5 -1.7 5S ribosomal RNA compare
EX31_RS24385 -0.5 -1.1 dihydroorotase compare
EX31_RS23875 -0.5 -1.7 DUF1471 domain-containing protein compare
EX31_RS06265 -0.5 -2.2 MipA/OmpV family protein compare
EX31_RS23860 -0.5 -1.3 hypothetical protein compare
EX31_RS06345 -0.5 -1.9 L-Ala-D/L-Glu epimerase compare
EX31_RS07535 -0.5 -1.1 cytochrome b/b6 domain-containing protein compare
EX31_RS13495 -0.5 -1.8 FAD assembly factor SdhE compare
EX31_RS20730 -0.5 -2.5 exodeoxyribonuclease V subunit alpha compare
EX31_RS03775 -0.5 -1.2 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
EX31_RS14550 -0.5 -0.9 Trk system potassium transporter TrkH compare
EX31_RS20090 -0.5 -1.0 tRNA-Ala compare
EX31_RS01590 -0.5 -1.2 phage tail assembly protein T compare
EX31_RS06790 -0.5 -1.5 histidinol dehydrogenase compare
EX31_RS23840 -0.5 -1.8 phosphonate ABC transporter, permease protein PhnE compare
EX31_RS22175 -0.5 -2.5 protein deglycase YajL compare
EX31_RS06380 -0.5 -1.9 YgdI/YgdR family lipoprotein compare
EX31_RS08270 -0.5 -1.3 DUF2000 domain-containing protein compare
EX31_RS14730 -0.5 -0.4 DUF2756 domain-containing protein compare
EX31_RS16355 -0.5 -2.3 hypothetical protein compare
EX31_RS06705 -0.5 -2.2 cellulose biosynthesis cyclic di-GMP-binding regulatory protein BcsB compare
EX31_RS00625 -0.5 -0.8 YgdI/YgdR family lipoprotein compare
EX31_RS07550 -0.5 -1.7 AraC family transcriptional regulator compare
EX31_RS04600 -0.5 -2.0 ureidoglycolate lyase compare
EX31_RS17615 -0.5 -0.5 hypothetical protein compare
EX31_RS03860 -0.4 -1.3 FKBP-type peptidyl-prolyl cis-trans isomerase compare
EX31_RS09615 -0.4 -1.9 putrescine ABC transporter permease PotI compare
EX31_RS23525 -0.4 -1.9 quinolinate synthase NadA compare
EX31_RS03925 -0.4 -3.3 alanine:cation symporter family protein compare
EX31_RS19175 -0.4 -2.3 gluconate 5-dehydrogenase compare
EX31_RS06550 -0.4 -1.1 two-component system response regulator NarL compare
EX31_RS00380 -0.4 -0.9 ABC transporter ATP-binding protein compare
EX31_RS20670 -0.4 -0.5 RNA chaperone/antiterminator CspA compare
EX31_RS19480 -0.4 -2.0 acetate kinase compare
EX31_RS06555 -0.4 -2.3 nitrate/nitrite two-component system sensor histidine kinase NarX compare
EX31_RS00550 -0.4 -1.9 cytochrome b/b6 domain-containing protein compare
EX31_RS06305 -0.4 -2.8 signal peptide peptidase SppA compare
EX31_RS18920 -0.4 -1.7 ABC transporter permease compare
EX31_RS07610 -0.4 -1.4 conjugal transfer protein TraR compare
EX31_RS24745 -0.4 -1.3 hypothetical protein compare
EX31_RS03400 -0.4 -1.7 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
EX31_RS19690 -0.4 -2.1 50S ribosomal protein L3 N(5)-glutamine methyltransferase compare
EX31_RS23725 -0.4 -1.5 DUF2132 domain-containing protein compare
EX31_RS23130 -0.4 -0.7 ribosome silencing factor compare
EX31_RS18445 -0.4 -0.8 DUF2732 domain-containing protein compare
EX31_RS08910 -0.4 -1.7 fumarate reductase subunit FrdC compare
EX31_RS23660 -0.4 -2.1 type 1 glutamine amidotransferase domain-containing protein compare
EX31_RS00530 -0.4 -1.6 ParD-like family protein compare
EX31_RS23245 -0.4 -3.6 asparagine synthase B compare
EX31_RS17415 -0.4 -1.4 autoinducer 2 ABC transporter substrate-binding protein compare


Specific Phenotypes

None in this experiment

For Rahnella sp. WP5 in mixed community experiments

For mixed community Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum across organisms