Experiment set4S142 for Rahnella sp. WP5

Compare to:

NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum

200 most important genes:

  gene name fitness t score description  
EX31_RS08745 -4.1 -2.8 50S ribosomal protein L9 compare
EX31_RS22430 -3.4 -2.3 hemolysin expression modulator Hha compare
EX31_RS01970 -2.9 -2.1 hypothetical protein compare
EX31_RS05825 -2.4 -1.7 mannitol-1-phosphate 5-dehydrogenase compare
EX31_RS13815 -2.3 -2.0 ribonuclease T compare
EX31_RS15870 -2.3 -1.6 glutamate--ammonia ligase compare
EX31_RS18255 -2.2 -5.2 3-phosphoserine/phosphohydroxythreonine transaminase compare
EX31_RS25365 -2.1 -1.7 50S ribosomal protein L31 compare
EX31_RS14340 -2.1 -2.0 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
EX31_RS14730 -2.0 -1.3 DUF2756 domain-containing protein compare
EX31_RS04105 -1.9 -3.5 helix-turn-helix domain-containing protein compare
EX31_RS11010 -1.7 -1.9 DgsA anti-repressor MtfA compare
EX31_RS02520 -1.7 -2.0 sigma-54-dependent Fis family transcriptional regulator compare
EX31_RS25910 -1.7 -2.0 hypothetical protein compare
EX31_RS11675 -1.7 -2.4 Holliday junction branch migration protein RuvA compare
EX31_RS23485 -1.7 -2.4 colicin uptake protein TolR compare
EX31_RS15880 -1.6 -6.4 nitrogen regulation protein NR(I) compare
EX31_RS20190 -1.5 -1.5 PTS glucose transporter subunit IIA compare
EX31_RS06055 -1.4 -2.4 phosphate ABC transporter ATP-binding protein PstB compare
EX31_RS13045 -1.4 -7.9 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
EX31_RS12240 -1.4 -2.2 rod shape-determining protein MreC compare
EX31_RS23490 -1.3 -2.2 cell envelope integrity protein TolA compare
EX31_RS23440 -1.3 -2.3 2-oxoglutarate dehydrogenase E1 component compare
EX31_RS02560 -1.3 -1.4 hypothetical protein compare
EX31_RS19795 -1.3 -1.9 hypothetical protein compare
EX31_RS04390 -1.3 -2.4 DNA polymerase III subunit chi compare
EX31_RS24300 -1.3 -2.4 DUF2971 domain-containing protein compare
EX31_RS11525 -1.3 -2.5 UTP--glucose-1-phosphate uridylyltransferase GalU compare
EX31_RS00170 -1.2 -1.6 DUF1471 domain-containing protein compare
EX31_RS24345 -1.2 -3.1 cytochrome b compare
EX31_RS07590 -1.2 -2.1 bifunctional chorismate mutase/prephenate dehydrogenase compare
EX31_RS13335 -1.2 -1.6 transcriptional regulator compare
EX31_RS11625 -1.1 -1.0 hypothetical protein compare
EX31_RS10825 -1.1 -1.7 hypothetical protein compare
EX31_RS06405 -1.1 -2.8 SDR family oxidoreductase compare
EX31_RS14335 -1.1 -2.1 serine O-acetyltransferase compare
EX31_RS08140 -1.1 -1.8 bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE compare
EX31_RS06340 -1.0 -2.5 thiol peroxidase compare
EX31_RS02525 -1.0 -4.7 ABC transporter permease compare
EX31_RS19440 -1.0 -6.3 transcriptional regulator LrhA compare
EX31_RS14550 -0.9 -1.6 Trk system potassium transporter TrkH compare
EX31_RS01955 -0.9 -1.7 DUF2931 family protein compare
EX31_RS20450 -0.9 -3.9 IMP dehydrogenase compare
EX31_RS25725 -0.9 -1.9 hypothetical protein compare
EX31_RS15875 -0.9 -5.9 nitrogen regulation protein NR(II) compare
EX31_RS10340 -0.9 -2.0 GNAT family N-acetyltransferase compare
EX31_RS20495 -0.9 -4.0 outer membrane protein assembly factor BamB compare
EX31_RS08515 -0.9 -7.0 lipoprotein NlpI compare
EX31_RS14405 -0.9 -1.3 lipopolysaccharide heptosyltransferase RfaC compare
EX31_RS07535 -0.8 -2.0 cytochrome b/b6 domain-containing protein compare
EX31_RS17710 -0.8 -2.6 hypothetical protein compare
EX31_RS16680 -0.8 -2.0 enoyl-CoA hydratase compare
EX31_RS12400 -0.8 -1.6 RNA polymerase factor sigma-54 compare
EX31_RS23785 -0.8 -2.1 DUF262 domain-containing protein compare
EX31_RS03400 -0.8 -3.0 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
EX31_RS06915 -0.8 -1.4 type I glyceraldehyde-3-phosphate dehydrogenase compare
EX31_RS23725 -0.8 -1.7 DUF2132 domain-containing protein compare
EX31_RS14320 -0.8 -1.5 envelope stress response regulator transcription factor CpxR compare
EX31_RS01960 -0.8 -1.6 DUF2931 family protein compare
EX31_RS20735 -0.7 -1.7 exodeoxyribonuclease V subunit beta compare
EX31_RS04710 -0.7 -2.2 adenine-specific DNA-methyltransferase compare
EX31_RS22250 -0.7 -2.1 ATP-dependent protease ATP-binding subunit ClpX compare
EX31_RS23965 -0.7 -1.6 hypothetical protein compare
EX31_RS00300 -0.7 -2.7 extradiol dioxygenase compare
EX31_RS19485 -0.7 -3.6 phosphate acetyltransferase compare
EX31_RS05040 -0.7 -2.7 helix-turn-helix domain-containing protein compare
EX31_RS02235 -0.7 -1.8 helix-turn-helix transcriptional regulator compare
EX31_RS00625 -0.7 -0.9 YgdI/YgdR family lipoprotein compare
EX31_RS06650 -0.7 -2.9 L-arabinose ABC transporter ATP-binding protein AraG compare
EX31_RS07475 -0.7 -1.2 hypothetical protein compare
EX31_RS11845 -0.7 -0.7 repressor LexA compare
EX31_RS10930 -0.7 -2.0 protein DsrB compare
EX31_RS18570 -0.7 -0.7 cold shock-like protein CspD compare
EX31_RS07135 -0.7 -1.0 hypothetical protein compare
EX31_RS16545 -0.7 -2.3 PTS lactose/cellobiose transporter subunit IIA compare
EX31_RS20265 -0.6 -1.4 YaiI/YqxD family protein compare
EX31_RS02510 -0.6 -2.5 4'-phosphopantetheinyl transferase superfamily protein compare
EX31_RS01990 -0.6 -1.3 type VI secretion system baseplate subunit TssE compare
EX31_RS25295 -0.6 -1.4 GhoT/OrtT family toxin compare
EX31_RS06620 -0.6 -2.8 electron transport complex subunit RsxA compare
EX31_RS25210 -0.6 -2.9 sulfite exporter TauE/SafE family protein compare
EX31_RS11045 -0.6 -1.2 NADP-dependent oxidoreductase compare
EX31_RS02515 -0.6 -1.2 PAS domain-containing protein compare
EX31_RS02310 -0.6 -0.7 hypothetical protein compare
EX31_RS23990 -0.6 -0.9 SDR family NAD(P)-dependent oxidoreductase compare
EX31_RS22145 -0.6 -1.6 phosphatidylglycerophosphatase A compare
EX31_RS15530 -0.6 -1.2 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit compare
EX31_RS07245 -0.6 -2.2 ABC transporter ATP-binding protein compare
EX31_RS09535 -0.6 -1.3 flagellar hook-basal body complex protein FliE compare
EX31_RS02690 -0.6 -3.2 pyrroline-5-carboxylate reductase compare
EX31_RS23030 -0.6 -1.8 transcription antiterminator/RNA stability regulator CspE compare
EX31_RS06320 -0.6 -1.9 YnjH family protein compare
EX31_RS01905 -0.6 -2.0 hypothetical protein compare
EX31_RS09600 -0.6 -1.2 flagellar type III secretion system protein FliR compare
EX31_RS18825 -0.6 -1.9 transcriptional regulator BetI compare
EX31_RS18370 -0.6 -1.2 tail protein X compare
EX31_RS00760 -0.6 -2.3 glutathione S-transferase compare
EX31_RS24880 -0.6 -4.8 carboxy terminal-processing peptidase compare
EX31_RS13745 -0.6 -2.1 pyridoxal kinase PdxY compare
EX31_RS10035 -0.6 -0.9 cardiolipin synthase compare
EX31_RS22665 -0.6 -1.4 DUF2633 family protein compare
EX31_RS20730 -0.6 -2.8 exodeoxyribonuclease V subunit alpha compare
EX31_RS18805 -0.6 -2.6 LysR family transcriptional regulator compare
EX31_RS07165 -0.5 -2.2 2-hydroxyacid dehydrogenase compare
EX31_RS17985 -0.5 -1.7 acylphosphatase compare
EX31_RS02410 -0.5 -1.1 multidrug DMT transporter compare
EX31_RS07285 -0.5 -1.5 GNAT family N-acetyltransferase compare
EX31_RS07830 -0.5 -2.8 murein hydrolase activator NlpD compare
EX31_RS01645 -0.5 -1.3 DUF1441 family protein compare
EX31_RS19975 -0.5 -2.8 curlin compare
EX31_RS25970 -0.5 -1.7 glutathione transferase GstA compare
EX31_RS02340 -0.5 -1.8 hypothetical protein compare
EX31_RS06990 -0.5 -1.7 GntR family transcriptional regulator compare
EX31_RS01480 -0.5 -1.7 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD compare
EX31_RS09655 -0.5 -1.0 membrane protein compare
EX31_RS23860 -0.5 -1.7 hypothetical protein compare
EX31_RS21895 -0.5 -4.1 phosphoribosylformylglycinamidine synthase compare
EX31_RS15025 -0.5 -2.6 peptidylprolyl isomerase PpiC compare
EX31_RS16420 -0.5 -1.8 DUF3290 domain-containing protein compare
EX31_RS10260 -0.5 -0.8 hypothetical protein compare
EX31_RS01965 -0.5 -1.7 DUF2931 family protein compare
EX31_RS07525 -0.5 -1.4 sulfurtransferase compare
EX31_RS09115 -0.5 -1.7 ABC transporter ATP-binding protein compare
EX31_RS06570 -0.5 -2.2 nickel/cobalt efflux protein RcnA compare
EX31_RS25130 -0.5 -1.5 DUF1328 domain-containing protein compare
EX31_RS21755 -0.5 -4.0 outer membrane protein assembly factor BamE compare
EX31_RS22695 -0.5 -1.9 phosphoribosylformylglycinamidine cyclo-ligase compare
EX31_RS23245 -0.5 -4.4 asparagine synthase B compare
EX31_RS25110 -0.5 -1.2 DUF2474 domain-containing protein compare
EX31_RS22620 -0.5 -1.8 5-(carboxyamino)imidazole ribonucleotide synthase compare
EX31_RS07520 -0.5 -1.6 ornithine cyclodeaminase compare
EX31_RS12310 -0.5 -1.8 hypothetical protein compare
EX31_RS12230 -0.5 -4.4 RNase E specificity factor CsrD compare
EX31_RS09580 -0.5 -0.8 flagellar motor switch protein FliN compare
EX31_RS01580 -0.5 -1.3 phage tail protein compare
EX31_RS09920 -0.5 -1.5 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
EX31_RS23415 -0.5 -2.9 citrate synthase compare
EX31_RS07075 -0.5 -2.0 bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG compare
EX31_RS00230 -0.5 -1.8 ABC transporter permease compare
EX31_RS02360 -0.5 -1.1 CsbD family protein compare
EX31_RS06585 -0.5 -0.4 DUF2501 domain-containing protein compare
EX31_RS23170 -0.5 -2.6 amino acid ABC transporter permease compare
EX31_RS25230 -0.5 -1.5 LysR family transcriptional regulator compare
EX31_RS04035 -0.5 -3.3 phosphoserine phosphatase compare
EX31_RS25555 -0.5 -0.6 GpE family phage tail protein compare
EX31_RS06455 -0.5 -1.7 sugar ABC transporter permease compare
EX31_RS09995 -0.5 -1.0 YkgJ family cysteine cluster protein compare
EX31_RS00470 -0.5 -1.5 PadR family transcriptional regulator compare
EX31_RS01265 -0.5 -1.0 GNAT family N-acetyltransferase compare
EX31_RS25095 -0.5 -1.1 hypothetical protein compare
EX31_RS06720 -0.5 -2.0 imidazolonepropionase compare
EX31_RS07800 -0.5 -2.6 recombinase RecA compare
EX31_RS13915 -0.5 -2.5 hypothetical protein compare
EX31_RS23495 -0.5 -1.9 Tol-Pal system protein TolB compare
EX31_RS19310 -0.5 -3.3 ribonucleotide-diphosphate reductase subunit beta compare
EX31_RS23895 -0.5 -1.9 TetR/AcrR family transcriptional regulator compare
EX31_RS19115 -0.5 -2.8 phosphatase PAP2 family protein compare
EX31_RS02110 -0.5 -1.2 L-rhamnose mutarotase compare
EX31_RS09815 -0.5 -1.5 2-keto-3-deoxygluconate transporter compare
EX31_RS01195 -0.5 -1.6 SDR family oxidoreductase compare
EX31_RS23815 -0.5 -1.8 hypothetical protein compare
EX31_RS17585 -0.5 -1.6 glutathione peroxidase compare
EX31_RS08520 -0.5 -2.8 polyribonucleotide nucleotidyltransferase compare
EX31_RS11215 -0.5 -1.4 TetR family transcriptional regulator compare
EX31_RS19150 -0.5 -1.9 hypothetical protein compare
EX31_RS10955 -0.4 -0.8 AI-2E family transporter compare
EX31_RS09520 -0.4 -1.2 hypothetical protein compare
EX31_RS09165 -0.4 -1.3 FadR family transcriptional regulator compare
EX31_RS18100 -0.4 -1.7 NADPH-dependent FMN reductase compare
EX31_RS07070 -0.4 -1.9 aldo/keto reductase compare
EX31_RS20135 -0.4 -1.3 nucleotidyltransferase family protein compare
EX31_RS06325 -0.4 -2.2 pyrimidine (deoxy)nucleoside triphosphate diphosphatase compare
EX31_RS00130 -0.4 -1.7 GGDEF domain-containing protein compare
EX31_RS13735 -0.4 -1.8 4-hydroxy-tetrahydrodipicolinate synthase compare
EX31_RS24320 -0.4 -1.4 DoxX family protein compare
EX31_RS10865 -0.4 -0.9 hypothetical protein compare
EX31_RS19570 -0.4 -3.0 amidophosphoribosyltransferase compare
EX31_RS23500 -0.4 -1.2 peptidoglycan-associated lipoprotein Pal compare
EX31_RS20105 -0.4 -2.3 tRNA-Val compare
EX31_RS06790 -0.4 -1.6 histidinol dehydrogenase compare
EX31_RS00110 -0.4 -1.3 ABC transporter permease compare
EX31_RS02580 -0.4 -1.6 ABC transporter permease compare
EX31_RS08730 -0.4 -1.9 iron-sulfur cluster repair protein YtfE compare
EX31_RS06690 -0.4 -1.4 hypothetical protein compare
EX31_RS24205 -0.4 -1.4 hypothetical protein compare
EX31_RS18290 -0.4 -0.8 phage tail assembly protein compare
EX31_RS13455 -0.4 -1.8 tRNA-Gly compare
EX31_RS09685 -0.4 -1.2 GNAT family N-acetyltransferase compare
EX31_RS10130 -0.4 -1.5 M81 family metallopeptidase compare
EX31_RS02430 -0.4 -1.9 3-oxoacyl-ACP synthase compare
EX31_RS07355 -0.4 -1.5 protease modulator HflK compare
EX31_RS19845 -0.4 -0.9 DNA polymerase II small subunit compare
EX31_RS19305 -0.4 -3.5 ribonucleoside-diphosphate reductase subunit alpha compare
EX31_RS22800 -0.4 -0.8 ArsC family reductase compare
EX31_RS08650 -0.4 -1.1 transcriptional regulator ArgR compare
EX31_RS18450 -0.4 -0.8 hypothetical protein compare
EX31_RS11125 -0.4 -1.6 ABC transporter ATP-binding protein compare
EX31_RS07300 -0.4 -1.8 tetratricopeptide repeat-containing protein compare
EX31_RS16710 -0.4 -1.6 ABC transporter permease subunit compare
EX31_RS10305 -0.4 -1.8 PTS transporter subunit EIIB compare


Specific Phenotypes

None in this experiment

For Rahnella sp. WP5 in mixed community experiments

For mixed community Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum across organisms