Experiment set4S141 for Rahnella sp. WP5

Compare to:

NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum

200 most important genes:

  gene name fitness t score description  
EX31_RS25365 -4.3 -2.8 50S ribosomal protein L31 compare
EX31_RS22430 -3.4 -2.3 hemolysin expression modulator Hha compare
EX31_RS07785 -2.6 -1.5 carbon storage regulator CsrA compare
EX31_RS06485 -2.5 -2.2 YdbL family protein compare
EX31_RS02520 -2.3 -1.6 sigma-54-dependent Fis family transcriptional regulator compare
EX31_RS23485 -2.3 -3.0 colicin uptake protein TolR compare
EX31_RS11540 -2.1 -3.9 dCTP deaminase compare
EX31_RS20670 -1.9 -1.4 RNA chaperone/antiterminator CspA compare
EX31_RS25105 -1.8 -1.6 DUF2474 domain-containing protein compare
EX31_RS06055 -1.7 -3.2 phosphate ABC transporter ATP-binding protein PstB compare
EX31_RS04645 -1.7 -1.2 DUF2559 family protein compare
EX31_RS04390 -1.7 -1.7 DNA polymerase III subunit chi compare
EX31_RS14340 -1.6 -1.7 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
EX31_RS25415 -1.6 -1.4 helix-turn-helix domain-containing protein compare
EX31_RS11845 -1.6 -1.1 repressor LexA compare
EX31_RS07430 -1.5 -2.8 transporter substrate-binding domain-containing protein compare
EX31_RS12400 -1.4 -1.6 RNA polymerase factor sigma-54 compare
EX31_RS23320 -1.4 -4.5 alpha-D-glucose phosphate-specific phosphoglucomutase compare
EX31_RS16655 -1.4 -2.3 hypothetical protein compare
EX31_RS17710 -1.4 -3.8 hypothetical protein compare
EX31_RS26040 -1.3 -1.8 hypothetical protein compare
EX31_RS13045 -1.3 -7.1 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
EX31_RS21020 -1.3 -1.8 D-sedoheptulose 7-phosphate isomerase compare
EX31_RS02530 -1.3 -1.5 ABC transporter ATP-binding protein compare
EX31_RS02515 -1.3 -2.4 PAS domain-containing protein compare
EX31_RS20495 -1.2 -5.1 outer membrane protein assembly factor BamB compare
EX31_RS16725 -1.2 -3.1 phytanoyl-CoA dioxygenase compare
EX31_RS23495 -1.2 -3.8 Tol-Pal system protein TolB compare
EX31_RS17010 -1.2 -2.1 sugar ABC transporter permease compare
EX31_RS23490 -1.2 -1.5 cell envelope integrity protein TolA compare
EX31_RS22250 -1.2 -2.8 ATP-dependent protease ATP-binding subunit ClpX compare
EX31_RS08140 -1.1 -1.8 bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE compare
EX31_RS02385 -1.1 -1.1 hypothetical protein compare
EX31_RS25645 -1.1 -1.9 K(+)-transporting ATPase subunit F compare
EX31_RS22800 -1.1 -2.3 ArsC family reductase compare
EX31_RS06235 -1.0 -1.4 hypothetical protein compare
EX31_RS25295 -1.0 -2.7 GhoT/OrtT family toxin compare
EX31_RS23440 -1.0 -1.5 2-oxoglutarate dehydrogenase E1 component compare
EX31_RS03220 -1.0 -0.9 Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC compare
EX31_RS24140 -1.0 -1.2 DUF2594 family protein compare
EX31_RS09685 -1.0 -2.5 GNAT family N-acetyltransferase compare
EX31_RS11675 -1.0 -1.3 Holliday junction branch migration protein RuvA compare
EX31_RS11525 -0.9 -1.6 UTP--glucose-1-phosphate uridylyltransferase GalU compare
EX31_RS25665 -0.9 -1.7 DUF2502 domain-containing protein compare
EX31_RS01710 -0.9 -0.9 hypothetical protein compare
EX31_RS06405 -0.9 -1.6 SDR family oxidoreductase compare
EX31_RS20735 -0.9 -2.2 exodeoxyribonuclease V subunit beta compare
EX31_RS06595 -0.9 -1.3 electron transport complex subunit E compare
EX31_RS01715 -0.9 -2.1 DNA replication protein compare
EX31_RS26075 -0.9 -1.2 hypothetical protein compare
EX31_RS05825 -0.9 -1.2 mannitol-1-phosphate 5-dehydrogenase compare
EX31_RS09650 -0.9 -1.1 GrxA family glutaredoxin compare
EX31_RS01885 -0.9 -2.0 type IV secretion protein Rhs compare
EX31_RS06690 -0.9 -2.7 hypothetical protein compare
EX31_RS20655 -0.9 -1.3 hypothetical protein compare
EX31_RS05040 -0.9 -2.8 helix-turn-helix domain-containing protein compare
EX31_RS07470 -0.9 -1.9 hypothetical protein compare
EX31_RS01700 -0.9 -1.6 chromosome partitioning protein ParB compare
EX31_RS22270 -0.8 -1.2 competence protein ComEA compare
EX31_RS23470 -0.8 -1.6 cyd operon protein YbgE compare
EX31_RS09490 -0.8 -1.4 hypothetical protein compare
EX31_RS08595 -0.8 -1.9 transcription elongation factor GreA compare
EX31_RS26065 -0.8 -1.8 IS630 family transposase compare
EX31_RS24730 -0.8 -1.6 YoaH family protein compare
EX31_RS09580 -0.8 -0.7 flagellar motor switch protein FliN compare
EX31_RS18255 -0.8 -1.8 3-phosphoserine/phosphohydroxythreonine transaminase compare
EX31_RS19440 -0.8 -4.5 transcriptional regulator LrhA compare
EX31_RS22750 -0.8 -1.9 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
EX31_RS02295 -0.8 -2.0 gluconate 2-dehydrogenase subunit 3 family protein compare
EX31_RS15880 -0.8 -3.2 nitrogen regulation protein NR(I) compare
EX31_RS02225 -0.8 -1.7 hypothetical protein compare
EX31_RS10100 -0.7 -1.4 two-component system response regulator RssB compare
EX31_RS03790 -0.7 -1.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
EX31_RS19395 -0.7 -1.5 NADH-quinone oxidoreductase subunit J compare
EX31_RS00715 -0.7 -1.8 class A beta-lactamase compare
EX31_RS12315 -0.7 -2.6 ribosome-associated protein compare
EX31_RS03140 -0.7 -1.9 DNA oxidative demethylase AlkB compare
EX31_RS07555 -0.7 -1.7 glucose 1-dehydrogenase compare
EX31_RS24555 -0.7 -3.7 two-component system sensor histidine kinase PhoQ compare
EX31_RS10035 -0.7 -0.7 cardiolipin synthase compare
EX31_RS14335 -0.7 -1.3 serine O-acetyltransferase compare
EX31_RS06285 -0.7 -1.7 peptide-methionine (R)-S-oxide reductase MsrB compare
EX31_RS19310 -0.7 -4.6 ribonucleotide-diphosphate reductase subunit beta compare
EX31_RS15870 -0.7 -1.6 glutamate--ammonia ligase compare
EX31_RS07360 -0.7 -2.1 protease modulator HflC compare
EX31_RS09550 -0.7 -1.0 flagellar assembly protein FliH compare
EX31_RS13740 -0.7 -1.5 glutathione transferase GstA compare
EX31_RS03775 -0.7 -1.6 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
EX31_RS26000 -0.7 -1.9 GntR family transcriptional regulator compare
EX31_RS11105 -0.6 -2.3 cytosine deaminase compare
EX31_RS26010 -0.6 -1.8 YnhF family membrane protein compare
EX31_RS09410 -0.6 -3.0 iron permease compare
EX31_RS25410 -0.6 -0.8 transposase compare
EX31_RS07830 -0.6 -2.0 murein hydrolase activator NlpD compare
EX31_RS01970 -0.6 -0.8 hypothetical protein compare
EX31_RS17835 -0.6 -1.4 PTS transporter subunit EIIB compare
EX31_RS23175 -0.6 -2.7 amino acid ABC transporter substrate-binding protein compare
EX31_RS18305 -0.6 -1.6 tail fiber assembly protein compare
EX31_RS24375 -0.6 -1.5 biofilm formation regulator BssS compare
EX31_RS20190 -0.6 -0.9 PTS glucose transporter subunit IIA compare
EX31_RS23560 -0.6 -2.2 phosphate starvation-inducible protein compare
EX31_RS10725 -0.6 -1.4 plasmid maintenance protein CcdB compare
EX31_RS07135 -0.6 -0.8 hypothetical protein compare
EX31_RS25720 -0.6 -2.2 hypothetical protein compare
EX31_RS22625 -0.6 -1.5 5-(carboxyamino)imidazole ribonucleotide mutase compare
EX31_RS16845 -0.6 -1.8 DNA-binding protein HU-alpha compare
EX31_RS07415 -0.6 -0.5 bifunctional diguanylate cyclase/phosphodiesterase compare
EX31_RS16645 -0.6 -1.2 DUF1471 domain-containing protein compare
EX31_RS09465 -0.6 -2.6 flagellar export chaperone FliS compare
EX31_RS00985 -0.6 -1.7 type VI secretion protein compare
EX31_RS11635 -0.6 -1.6 transcriptional antiterminator BglG compare
EX31_RS18725 -0.6 -3.0 glutathione ABC transporter permease GsiD compare
EX31_RS17560 -0.6 -2.6 FadR family transcriptional regulator compare
EX31_RS17640 -0.6 -0.8 TetR/AcrR family transcriptional regulator compare
EX31_RS13870 -0.6 -0.8 pyruvate kinase PykF compare
EX31_RS25095 -0.6 -1.2 hypothetical protein compare
EX31_RS00490 -0.6 -2.0 paraquat-inducible protein A compare
EX31_RS23500 -0.6 -1.1 peptidoglycan-associated lipoprotein Pal compare
EX31_RS01535 -0.6 -1.8 hypothetical protein compare
EX31_RS06990 -0.6 -1.8 GntR family transcriptional regulator compare
EX31_RS06810 -0.6 -0.6 LysR family transcriptional regulator compare
EX31_RS17985 -0.6 -1.7 acylphosphatase compare
EX31_RS07685 -0.6 -1.2 phage tail assembly protein compare
EX31_RS17290 -0.6 -1.5 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB compare
EX31_RS08515 -0.6 -4.6 lipoprotein NlpI compare
EX31_RS02525 -0.6 -2.4 ABC transporter permease compare
EX31_RS17750 -0.6 -1.8 glutathione S-transferase family protein compare
EX31_RS09585 -0.6 -0.9 flagellar biosynthetic protein FliO compare
EX31_RS10215 -0.5 -1.6 NAD(P)-dependent oxidoreductase compare
EX31_RS10520 -0.5 -1.4 hypothetical protein compare
EX31_RS20700 -0.5 -1.2 GNAT family N-acetyltransferase compare
EX31_RS11570 -0.5 -2.0 LysR family transcriptional regulator compare
EX31_RS09065 -0.5 -1.4 molecular chaperone compare
EX31_RS03400 -0.5 -2.3 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
EX31_RS09630 -0.5 -2.3 spermidine/putrescine ABC transporter substrate-binding protein PotF compare
EX31_RS00610 -0.5 -1.3 heme utilization cystosolic carrier protein HutX compare
EX31_RS07180 -0.5 -1.5 DNA endonuclease SmrA compare
EX31_RS14635 -0.5 -2.1 DedA family protein compare
EX31_RS08745 -0.5 -0.5 50S ribosomal protein L9 compare
EX31_RS21570 -0.5 -2.3 hypothetical protein compare
EX31_RS02320 -0.5 -1.9 LysR family transcriptional regulator compare
EX31_RS19885 -0.5 -1.8 HypC/HybG/HupF family hydrogenase formation chaperone compare
EX31_RS17820 -0.5 -2.4 DUF805 domain-containing protein compare
EX31_RS09990 -0.5 -1.8 outer membrane protein OmpW compare
EX31_RS25245 -0.5 -1.8 late control protein B compare
EX31_RS23975 -0.5 -2.3 class I SAM-dependent methyltransferase compare
EX31_RS23990 -0.5 -0.6 SDR family NAD(P)-dependent oxidoreductase compare
EX31_RS18525 -0.5 -1.5 DNA translocase FtsK compare
EX31_RS11840 -0.5 -3.1 diacylglycerol kinase compare
EX31_RS20135 -0.5 -1.4 nucleotidyltransferase family protein compare
EX31_RS24050 -0.5 -1.8 ABC transporter permease compare
EX31_RS22260 -0.5 -2.3 DNA-binding protein HU-beta compare
EX31_RS19305 -0.5 -4.0 ribonucleoside-diphosphate reductase subunit alpha compare
EX31_RS21575 -0.5 -1.6 hypothetical protein compare
EX31_RS24655 -0.5 -1.8 hypothetical protein compare
EX31_RS12230 -0.5 -4.1 RNase E specificity factor CsrD compare
EX31_RS24305 -0.5 -1.8 VOC family protein compare
EX31_RS10240 -0.5 -2.1 ABC transporter substrate-binding protein compare
EX31_RS09600 -0.5 -1.5 flagellar type III secretion system protein FliR compare
EX31_RS20265 -0.5 -1.2 YaiI/YqxD family protein compare
EX31_RS09125 -0.5 -1.8 ABC transporter substrate-binding protein compare
EX31_RS11380 -0.5 -2.7 hypothetical protein compare
EX31_RS18350 -0.5 -2.3 phage tail protein compare
EX31_RS09655 -0.5 -0.7 membrane protein compare
EX31_RS09225 -0.5 -1.9 iron-containing alcohol dehydrogenase family protein compare
EX31_RS08520 -0.5 -3.2 polyribonucleotide nucleotidyltransferase compare
EX31_RS16715 -0.5 -1.5 ATP-binding cassette domain-containing protein compare
EX31_RS23980 -0.5 -2.7 DUF1365 domain-containing protein compare
EX31_RS10130 -0.5 -2.1 M81 family metallopeptidase compare
EX31_RS02740 -0.5 -0.3 oxidative damage protection protein compare
EX31_RS25630 -0.5 -1.6 DUF3606 domain-containing protein compare
EX31_RS08260 -0.5 -1.9 methylated-DNA--[protein]-cysteine S-methyltransferase compare
EX31_RS10410 -0.5 -1.5 SDR family NAD(P)-dependent oxidoreductase compare
EX31_RS15160 -0.5 -1.4 DUF484 domain-containing protein compare
EX31_RS11115 -0.5 -1.5 creatininase family protein compare
EX31_RS09890 -0.5 -3.3 HTH-type transcriptional regulator CysB compare
EX31_RS10590 -0.5 -0.8 cell division topological specificity factor MinE compare
EX31_RS03645 -0.5 -0.8 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
EX31_RS24290 -0.5 -1.7 type VI secretion system tube protein Hcp compare
EX31_RS11260 -0.5 -1.9 CidB/LrgB family autolysis modulator compare
EX31_RS25875 -0.5 -1.0 hypothetical protein compare
EX31_RS24385 -0.5 -1.4 dihydroorotase compare
EX31_RS22185 -0.4 -1.0 YajQ family cyclic di-GMP-binding protein compare
EX31_RS13770 -0.4 -1.3 glycine zipper 2TM domain-containing protein compare
EX31_RS23895 -0.4 -1.8 TetR/AcrR family transcriptional regulator compare
EX31_RS08405 -0.4 -2.2 phosphonate metabolism transcriptional regulator PhnF compare
EX31_RS15905 -0.4 -3.0 DNA polymerase I compare
EX31_RS25130 -0.4 -1.4 DUF1328 domain-containing protein compare
EX31_RS11355 -0.4 -1.5 chemotaxis protein CheY compare
EX31_RS04105 -0.4 -0.7 helix-turn-helix domain-containing protein compare
EX31_RS21845 -0.4 -2.3 DNA repair protein RecO compare
EX31_RS17390 -0.4 -1.7 succinylglutamate desuccinylase compare
EX31_RS16900 -0.4 -2.3 sugar phosphate isomerase/epimerase compare
EX31_RS20890 -0.4 -0.9 hypothetical protein compare
EX31_RS23665 -0.4 -2.8 NADP-dependent oxidoreductase compare
EX31_RS24605 -0.4 -0.9 hypothetical protein compare
EX31_RS22770 -0.4 -1.4 esterase compare
EX31_RS10490 -0.4 -1.0 putative selenium delivery protein YdfZ compare
EX31_RS10080 -0.4 -2.2 thymidine kinase compare
EX31_RS21895 -0.4 -3.3 phosphoribosylformylglycinamidine synthase compare


Specific Phenotypes

None in this experiment

For Rahnella sp. WP5 in mixed community experiments

For mixed community Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum across organisms