Experiment set4S138 for Rahnella sp. WP5

Compare to:

NL-CCM

200 most important genes:

  gene name fitness t score description  
EX31_RS08745 -4.1 -2.8 50S ribosomal protein L9 compare
EX31_RS08140 -2.3 -4.0 bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE compare
EX31_RS13045 -2.0 -12.0 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
EX31_RS04390 -1.9 -2.6 DNA polymerase III subunit chi compare
EX31_RS11540 -1.9 -4.9 dCTP deaminase compare
EX31_RS11525 -1.8 -4.3 UTP--glucose-1-phosphate uridylyltransferase GalU compare
EX31_RS02520 -1.6 -2.1 sigma-54-dependent Fis family transcriptional regulator compare
EX31_RS23485 -1.6 -2.3 colicin uptake protein TolR compare
EX31_RS05825 -1.5 -1.7 mannitol-1-phosphate 5-dehydrogenase compare
EX31_RS18255 -1.5 -3.9 3-phosphoserine/phosphohydroxythreonine transaminase compare
EX31_RS15880 -1.5 -6.4 nitrogen regulation protein NR(I) compare
EX31_RS12400 -1.4 -2.5 RNA polymerase factor sigma-54 compare
EX31_RS15870 -1.4 -3.0 glutamate--ammonia ligase compare
EX31_RS23440 -1.3 -2.6 2-oxoglutarate dehydrogenase E1 component compare
EX31_RS15875 -1.3 -9.1 nitrogen regulation protein NR(II) compare
EX31_RS24140 -1.3 -1.9 DUF2594 family protein compare
EX31_RS23500 -1.3 -3.3 peptidoglycan-associated lipoprotein Pal compare
EX31_RS02515 -1.3 -1.7 PAS domain-containing protein compare
EX31_RS25415 -1.2 -1.6 helix-turn-helix domain-containing protein compare
EX31_RS20495 -1.2 -5.9 outer membrane protein assembly factor BamB compare
EX31_RS06225 -1.2 -2.0 hypothetical protein compare
EX31_RS12240 -1.2 -1.6 rod shape-determining protein MreC compare
EX31_RS14405 -1.1 -1.7 lipopolysaccharide heptosyltransferase RfaC compare
EX31_RS04105 -1.1 -2.0 helix-turn-helix domain-containing protein compare
EX31_RS16725 -1.1 -2.3 phytanoyl-CoA dioxygenase compare
EX31_RS04035 -1.1 -7.2 phosphoserine phosphatase compare
EX31_RS07135 -1.0 -2.2 hypothetical protein compare
EX31_RS23245 -1.0 -9.1 asparagine synthase B compare
EX31_RS10100 -1.0 -2.2 two-component system response regulator RssB compare
EX31_RS24880 -1.0 -8.6 carboxy terminal-processing peptidase compare
EX31_RS07830 -1.0 -4.8 murein hydrolase activator NlpD compare
EX31_RS04325 -1.0 -1.1 hypothetical protein compare
EX31_RS15905 -1.0 -7.1 DNA polymerase I compare
EX31_RS03790 -1.0 -1.7 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
EX31_RS25295 -0.9 -2.0 GhoT/OrtT family toxin compare
EX31_RS25645 -0.9 -1.5 K(+)-transporting ATPase subunit F compare
EX31_RS22080 -0.9 -6.2 peroxiredoxin C compare
EX31_RS11675 -0.9 -1.8 Holliday junction branch migration protein RuvA compare
EX31_RS18095 -0.9 -3.7 quinone-dependent dihydroorotate dehydrogenase compare
EX31_RS03400 -0.9 -3.4 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
EX31_RS22250 -0.9 -2.2 ATP-dependent protease ATP-binding subunit ClpX compare
EX31_RS23480 -0.8 -3.1 Tol-Pal system protein TolQ compare
EX31_RS05040 -0.8 -4.3 helix-turn-helix domain-containing protein compare
EX31_RS23490 -0.8 -1.4 cell envelope integrity protein TolA compare
EX31_RS22800 -0.8 -2.3 ArsC family reductase compare
EX31_RS00380 -0.8 -3.0 ABC transporter ATP-binding protein compare
EX31_RS23320 -0.8 -2.6 alpha-D-glucose phosphate-specific phosphoglucomutase compare
EX31_RS22430 -0.8 -1.1 hemolysin expression modulator Hha compare
EX31_RS18040 -0.8 -5.9 porin OmpA compare
EX31_RS03835 -0.8 -4.4 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
EX31_RS00170 -0.8 -2.2 DUF1471 domain-containing protein compare
EX31_RS14345 -0.7 -2.0 protein-export chaperone SecB compare
EX31_RS19305 -0.7 -6.4 ribonucleoside-diphosphate reductase subunit alpha compare
EX31_RS10955 -0.7 -2.1 AI-2E family transporter compare
EX31_RS09855 -0.7 -2.2 orotidine-5'-phosphate decarboxylase compare
EX31_RS10535 -0.7 -1.2 GtrA family protein compare
EX31_RS19440 -0.7 -5.0 transcriptional regulator LrhA compare
EX31_RS25400 -0.7 -2.8 transcriptional regulator compare
EX31_RS22620 -0.7 -3.2 5-(carboxyamino)imidazole ribonucleotide synthase compare
EX31_RS08515 -0.7 -6.1 lipoprotein NlpI compare
EX31_RS14320 -0.7 -1.3 envelope stress response regulator transcription factor CpxR compare
EX31_RS02530 -0.7 -1.0 ABC transporter ATP-binding protein compare
EX31_RS11355 -0.7 -1.1 chemotaxis protein CheY compare
EX31_RS25595 -0.7 -1.8 hypothetical protein compare
EX31_RS01265 -0.7 -2.6 GNAT family N-acetyltransferase compare
EX31_RS14550 -0.7 -1.3 Trk system potassium transporter TrkH compare
EX31_RS19310 -0.7 -4.8 ribonucleotide-diphosphate reductase subunit beta compare
EX31_RS01075 -0.7 -2.9 manganese-binding transcriptional regulator MntR compare
EX31_RS12785 -0.7 -4.4 aspartate carbamoyltransferase compare
EX31_RS07785 -0.7 -0.8 carbon storage regulator CsrA compare
EX31_RS20735 -0.7 -1.8 exodeoxyribonuclease V subunit beta compare
EX31_RS03830 -0.7 -5.4 carbamoyl-phosphate synthase large subunit compare
EX31_RS03010 -0.6 -3.5 helix-turn-helix domain-containing protein compare
EX31_RS16350 -0.6 -4.9 DsbA family protein compare
EX31_RS23415 -0.6 -4.0 citrate synthase compare
EX31_RS03900 -0.6 -2.7 molecular chaperone DnaK compare
EX31_RS09565 -0.6 -1.5 flagellar hook-length control protein FliK compare
EX31_RS16855 -0.6 -4.6 phosphoribosylamine--glycine ligase compare
EX31_RS14310 -0.6 -2.0 6-phosphofructokinase compare
EX31_RS09925 -0.6 -1.9 alpha-ribazole phosphatase compare
EX31_RS12230 -0.6 -5.6 RNase E specificity factor CsrD compare
EX31_RS23895 -0.6 -2.0 TetR/AcrR family transcriptional regulator compare
EX31_RS02385 -0.6 -0.9 hypothetical protein compare
EX31_RS21895 -0.6 -5.1 phosphoribosylformylglycinamidine synthase compare
EX31_RS14500 -0.6 -3.8 orotate phosphoribosyltransferase compare
EX31_RS06340 -0.6 -1.5 thiol peroxidase compare
EX31_RS10430 -0.6 -2.1 5-oxoprolinase subunit PxpB compare
EX31_RS11045 -0.6 -1.0 NADP-dependent oxidoreductase compare
EX31_RS14335 -0.6 -1.4 serine O-acetyltransferase compare
EX31_RS09310 -0.6 -1.2 nitrate reductase molybdenum cofactor assembly chaperone compare
EX31_RS26025 -0.6 -1.6 conjugal transfer protein TraK compare
EX31_RS09585 -0.6 -1.4 flagellar biosynthetic protein FliO compare
EX31_RS21755 -0.6 -4.8 outer membrane protein assembly factor BamE compare
EX31_RS22695 -0.6 -3.3 phosphoribosylformylglycinamidine cyclo-ligase compare
EX31_RS13480 -0.6 -2.7 site-specific tyrosine recombinase XerD compare
EX31_RS25555 -0.6 -1.5 GpE family phage tail protein compare
EX31_RS06845 -0.6 -2.0 MmgE/PrpD family protein compare
EX31_RS07470 -0.6 -1.0 hypothetical protein compare
EX31_RS10725 -0.6 -1.5 plasmid maintenance protein CcdB compare
EX31_RS16845 -0.6 -1.8 DNA-binding protein HU-alpha compare
EX31_RS23175 -0.6 -2.7 amino acid ABC transporter substrate-binding protein compare
EX31_RS24255 -0.6 -4.7 glucans biosynthesis glucosyltransferase MdoH compare
EX31_RS01695 -0.6 -1.2 RusA family crossover junction endodeoxyribonuclease compare
EX31_RS12510 -0.6 -4.4 FAD-dependent oxidoreductase compare
EX31_RS06690 -0.5 -1.7 hypothetical protein compare
EX31_RS14170 -0.5 -4.3 DNA-binding transcriptional regulator OxyR compare
EX31_RS16860 -0.5 -4.7 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
EX31_RS07520 -0.5 -1.5 ornithine cyclodeaminase compare
EX31_RS00580 -0.5 -1.4 LysR family transcriptional regulator compare
EX31_RS06800 -0.5 -2.0 ABC transporter permease compare
EX31_RS19570 -0.5 -4.1 amidophosphoribosyltransferase compare
EX31_RS20185 -0.5 -2.2 phosphoenolpyruvate-protein phosphotransferase PtsI compare
EX31_RS13875 -0.5 -3.2 major outer membrane lipoprotein compare
EX31_RS16680 -0.5 -1.2 enoyl-CoA hydratase compare
EX31_RS09655 -0.5 -1.1 membrane protein compare
EX31_RS10825 -0.5 -1.1 hypothetical protein compare
EX31_RS11690 -0.5 -1.4 dihydroneopterin triphosphate diphosphatase compare
EX31_RS01710 -0.5 -1.2 hypothetical protein compare
EX31_RS02475 -0.5 -3.5 3-oxoacyl-ACP synthase compare
EX31_RS06515 -0.5 -3.4 two-component system sensor histidine kinase RstB compare
EX31_RS16670 -0.5 -2.4 NAD(P)-dependent alcohol dehydrogenase compare
EX31_RS09640 -0.5 -2.6 30S ribosomal protein S6--L-glutamate ligase compare
EX31_RS07115 -0.5 -1.7 cysteine dioxygenase compare
EX31_RS24600 -0.5 -1.2 hypothetical protein compare
EX31_RS07475 -0.5 -0.8 hypothetical protein compare
EX31_RS10245 -0.5 -2.2 D-alanyl-D-alanine dipeptidase compare
EX31_RS09690 -0.5 -2.4 undecaprenyl-diphosphate phosphatase compare
EX31_RS02575 -0.5 -2.4 ABC transporter permease compare
EX31_RS21020 -0.5 -0.8 D-sedoheptulose 7-phosphate isomerase compare
EX31_RS24385 -0.5 -1.4 dihydroorotase compare
EX31_RS09225 -0.5 -1.7 iron-containing alcohol dehydrogenase family protein compare
EX31_RS10515 -0.5 -2.0 disulfide bond formation protein DsbB compare
EX31_RS16675 -0.5 -1.4 histidine utilization repressor compare
EX31_RS21145 -0.5 -1.3 oxalurate catabolism protein HpxZ compare
EX31_RS18525 -0.5 -1.2 DNA translocase FtsK compare
EX31_RS25025 -0.5 -1.0 DUF1272 domain-containing protein compare
EX31_RS02110 -0.5 -1.6 L-rhamnose mutarotase compare
EX31_RS02525 -0.4 -2.9 ABC transporter permease compare
EX31_RS19600 -0.4 -2.7 tRNA pseudouridine(38-40) synthase TruA compare
EX31_RS09215 -0.4 -1.9 MFS transporter compare
EX31_RS11105 -0.4 -1.9 cytosine deaminase compare
EX31_RS11205 -0.4 -1.5 chemotaxis protein CheV compare
EX31_RS09670 -0.4 -1.2 bleomycin resistance protein compare
EX31_RS09235 -0.4 -1.7 M55 family metallopeptidase compare
EX31_RS01090 -0.4 -1.8 metal ABC transporter permease compare
EX31_RS13335 -0.4 -1.0 transcriptional regulator compare
EX31_RS19115 -0.4 -3.1 phosphatase PAP2 family protein compare
EX31_RS16355 -0.4 -1.3 hypothetical protein compare
EX31_RS17560 -0.4 -2.2 FadR family transcriptional regulator compare
EX31_RS11255 -0.4 -3.0 CidA/LrgA family protein compare
EX31_RS24555 -0.4 -2.9 two-component system sensor histidine kinase PhoQ compare
EX31_RS20935 -0.4 -0.9 hypothetical protein compare
EX31_RS23925 -0.4 -2.2 suppressor of fused domain protein compare
EX31_RS23170 -0.4 -2.9 amino acid ABC transporter permease compare
EX31_RS10580 -0.4 -1.8 septum site-determining protein MinC compare
EX31_RS05910 -0.4 -3.5 LacI family DNA-binding transcriptional regulator compare
EX31_RS17655 -0.4 -2.5 hypothetical protein compare
EX31_RS02495 -0.4 -2.2 cytochrome P450 compare
EX31_RS22315 -0.4 -2.1 P-II family nitrogen regulator compare
EX31_RS15630 -0.4 -1.1 YgdI/YgdR family lipoprotein compare
EX31_RS23050 -0.4 -2.2 GNAT family N-acetyltransferase compare
EX31_RS03140 -0.4 -1.7 DNA oxidative demethylase AlkB compare
EX31_RS23470 -0.4 -1.0 cyd operon protein YbgE compare
EX31_RS18745 -0.4 -2.6 isoaspartyl peptidase/L-asparaginase compare
EX31_RS23495 -0.4 -1.9 Tol-Pal system protein TolB compare
EX31_RS01510 -0.4 -1.7 DinI-like family protein compare
EX31_RS10340 -0.4 -1.1 GNAT family N-acetyltransferase compare
EX31_RS25725 -0.4 -1.2 hypothetical protein compare
EX31_RS01960 -0.4 -1.2 DUF2931 family protein compare
EX31_RS24250 -0.4 -2.3 glucan biosynthesis protein G compare
EX31_RS19105 -0.4 -2.4 hypothetical protein compare
EX31_RS20890 -0.4 -1.2 hypothetical protein compare
EX31_RS07380 -0.4 -1.0 redox-regulated ATPase YchF compare
EX31_RS08150 -0.4 -3.4 inorganic triphosphatase compare
EX31_RS00190 -0.4 -1.7 H-NS histone family protein compare
EX31_RS24300 -0.4 -1.0 DUF2971 domain-containing protein compare
EX31_RS05885 -0.4 -1.8 N-acetyltransferase compare
EX31_RS06755 -0.4 -1.3 histidine ammonia-lyase compare
EX31_RS13445 -0.4 -3.3 argininosuccinate synthase compare
EX31_RS13310 -0.4 -3.1 GntR family transcriptional regulator compare
EX31_RS17790 -0.4 -1.7 citrate lyase acyl carrier protein compare
EX31_RS19845 -0.4 -1.3 DNA polymerase II small subunit compare
EX31_RS00490 -0.4 -1.0 paraquat-inducible protein A compare
EX31_RS23395 -0.4 -2.0 5-oxoprolinase subunit PxpA compare
EX31_RS19575 -0.4 -3.0 colicin V production protein compare
EX31_RS09820 -0.4 -1.3 fructose-6-phosphate aldolase compare
EX31_RS09065 -0.4 -1.6 molecular chaperone compare
EX31_RS08520 -0.4 -2.7 polyribonucleotide nucleotidyltransferase compare
EX31_RS09630 -0.4 -2.0 spermidine/putrescine ABC transporter substrate-binding protein PotF compare
EX31_RS07440 -0.4 -1.1 urea carboxylase-associated family protein compare
EX31_RS15165 -0.4 -1.7 tyrosine recombinase XerC compare
EX31_RS20940 -0.4 -1.1 AlpA family transcriptional regulator compare
EX31_RS16645 -0.4 -0.4 DUF1471 domain-containing protein compare
EX31_RS04775 -0.4 -2.0 Hsp33 family molecular chaperone HslO compare
EX31_RS11870 -0.4 -1.5 envelope stress response protein PspG compare
EX31_RS20930 -0.4 -0.9 hypothetical protein compare
EX31_RS24365 -0.4 -1.5 response regulator transcription factor compare
EX31_RS19655 -0.4 -1.6 beta-ketoacyl-ACP synthase I compare
EX31_RS09650 -0.4 -1.0 GrxA family glutaredoxin compare
EX31_RS06265 -0.4 -2.1 MipA/OmpV family protein compare


Specific Phenotypes

None in this experiment

For Rahnella sp. WP5 in nl-ccm experiments