Experiment set4S135 for Rahnella sp. WP5

Compare to:

NL-CCM

200 most important genes:

  gene name fitness t score description  
EX31_RS25365 -2.9 -2.7 50S ribosomal protein L31 compare
EX31_RS05825 -2.5 -1.7 mannitol-1-phosphate 5-dehydrogenase compare
EX31_RS02520 -2.3 -2.6 sigma-54-dependent Fis family transcriptional regulator compare
EX31_RS14405 -2.2 -2.6 lipopolysaccharide heptosyltransferase RfaC compare
EX31_RS04390 -2.1 -2.5 DNA polymerase III subunit chi compare
EX31_RS08745 -1.9 -2.2 50S ribosomal protein L9 compare
EX31_RS02530 -1.7 -2.5 ABC transporter ATP-binding protein compare
EX31_RS11525 -1.7 -4.4 UTP--glucose-1-phosphate uridylyltransferase GalU compare
EX31_RS13045 -1.7 -10.5 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
EX31_RS04325 -1.7 -1.6 hypothetical protein compare
EX31_RS14335 -1.7 -3.8 serine O-acetyltransferase compare
EX31_RS15880 -1.7 -7.8 nitrogen regulation protein NR(I) compare
EX31_RS11540 -1.5 -4.7 dCTP deaminase compare
EX31_RS22430 -1.4 -1.9 hemolysin expression modulator Hha compare
EX31_RS12400 -1.4 -1.6 RNA polymerase factor sigma-54 compare
EX31_RS14550 -1.4 -2.8 Trk system potassium transporter TrkH compare
EX31_RS23440 -1.3 -2.7 2-oxoglutarate dehydrogenase E1 component compare
EX31_RS14320 -1.3 -1.9 envelope stress response regulator transcription factor CpxR compare
EX31_RS12875 -1.2 -2.4 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
EX31_RS06585 -1.2 -2.1 DUF2501 domain-containing protein compare
EX31_RS11675 -1.1 -1.9 Holliday junction branch migration protein RuvA compare
EX31_RS18255 -1.1 -2.7 3-phosphoserine/phosphohydroxythreonine transaminase compare
EX31_RS23495 -1.0 -4.3 Tol-Pal system protein TolB compare
EX31_RS15875 -1.0 -7.6 nitrogen regulation protein NR(II) compare
EX31_RS22270 -1.0 -1.7 competence protein ComEA compare
EX31_RS22250 -1.0 -2.7 ATP-dependent protease ATP-binding subunit ClpX compare
EX31_RS26010 -1.0 -3.1 YnhF family membrane protein compare
EX31_RS22750 -0.9 -2.9 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
EX31_RS02525 -0.9 -5.1 ABC transporter permease compare
EX31_RS25690 -0.9 -2.6 tyrosine-type recombinase/integrase compare
EX31_RS07785 -0.9 -0.7 carbon storage regulator CsrA compare
EX31_RS20495 -0.9 -4.2 outer membrane protein assembly factor BamB compare
EX31_RS23245 -0.9 -8.0 asparagine synthase B compare
EX31_RS23480 -0.9 -3.1 Tol-Pal system protein TolQ compare
EX31_RS24880 -0.9 -7.8 carboxy terminal-processing peptidase compare
EX31_RS23895 -0.9 -5.1 TetR/AcrR family transcriptional regulator compare
EX31_RS08140 -0.9 -2.1 bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE compare
EX31_RS02515 -0.9 -1.7 PAS domain-containing protein compare
EX31_RS03190 -0.9 -2.2 hypothetical protein compare
EX31_RS19440 -0.9 -5.9 transcriptional regulator LrhA compare
EX31_RS15870 -0.9 -1.8 glutamate--ammonia ligase compare
EX31_RS15905 -0.9 -6.4 DNA polymerase I compare
EX31_RS23320 -0.8 -2.9 alpha-D-glucose phosphate-specific phosphoglucomutase compare
EX31_RS20735 -0.8 -2.2 exodeoxyribonuclease V subunit beta compare
EX31_RS14310 -0.8 -2.3 6-phosphofructokinase compare
EX31_RS12240 -0.8 -1.8 rod shape-determining protein MreC compare
EX31_RS24945 -0.8 -1.5 5S ribosomal RNA compare
EX31_RS25555 -0.8 -2.0 GpE family phage tail protein compare
EX31_RS16710 -0.8 -2.5 ABC transporter permease subunit compare
EX31_RS23485 -0.7 -1.1 colicin uptake protein TolR compare
EX31_RS21020 -0.7 -1.5 D-sedoheptulose 7-phosphate isomerase compare
EX31_RS07535 -0.7 -1.8 cytochrome b/b6 domain-containing protein compare
EX31_RS04035 -0.7 -5.3 phosphoserine phosphatase compare
EX31_RS26000 -0.7 -1.3 GntR family transcriptional regulator compare
EX31_RS23500 -0.7 -2.1 peptidoglycan-associated lipoprotein Pal compare
EX31_RS08515 -0.7 -5.9 lipoprotein NlpI compare
EX31_RS24555 -0.7 -4.3 two-component system sensor histidine kinase PhoQ compare
EX31_RS04320 -0.7 -1.9 hypothetical protein compare
EX31_RS09560 -0.7 -2.1 flagella biosynthesis chaperone FliJ compare
EX31_RS23785 -0.7 -1.9 DUF262 domain-containing protein compare
EX31_RS16350 -0.6 -5.4 DsbA family protein compare
EX31_RS11315 -0.6 -1.9 flagellar basal body rod protein FlgB compare
EX31_RS05040 -0.6 -2.9 helix-turn-helix domain-containing protein compare
EX31_RS24385 -0.6 -1.9 dihydroorotase compare
EX31_RS03835 -0.6 -4.0 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
EX31_RS15155 -0.6 -1.8 diaminopimelate epimerase compare
EX31_RS11205 -0.6 -2.1 chemotaxis protein CheV compare
EX31_RS25990 -0.6 -2.5 hypothetical protein compare
EX31_RS03830 -0.6 -5.1 carbamoyl-phosphate synthase large subunit compare
EX31_RS06680 -0.6 -0.9 cellulose biosynthesis protein BcsF compare
EX31_RS04105 -0.6 -1.4 helix-turn-helix domain-containing protein compare
EX31_RS20450 -0.6 -3.0 IMP dehydrogenase compare
EX31_RS16855 -0.6 -4.7 phosphoribosylamine--glycine ligase compare
EX31_RS03400 -0.6 -2.9 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
EX31_RS01615 -0.6 -2.0 DNA breaking-rejoining protein compare
EX31_RS19570 -0.6 -4.5 amidophosphoribosyltransferase compare
EX31_RS20265 -0.6 -1.5 YaiI/YqxD family protein compare
EX31_RS06690 -0.6 -1.8 hypothetical protein compare
EX31_RS06340 -0.6 -1.2 thiol peroxidase compare
EX31_RS12230 -0.6 -5.2 RNase E specificity factor CsrD compare
EX31_RS23575 -0.6 -2.9 galactose-1-phosphate uridylyltransferase compare
EX31_RS21895 -0.6 -4.7 phosphoribosylformylglycinamidine synthase compare
EX31_RS19310 -0.6 -4.4 ribonucleotide-diphosphate reductase subunit beta compare
EX31_RS03775 -0.6 -2.2 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
EX31_RS22620 -0.6 -3.0 5-(carboxyamino)imidazole ribonucleotide synthase compare
EX31_RS16355 -0.6 -2.4 hypothetical protein compare
EX31_RS01075 -0.6 -2.9 manganese-binding transcriptional regulator MntR compare
EX31_RS18040 -0.6 -4.6 porin OmpA compare
EX31_RS24140 -0.6 -1.1 DUF2594 family protein compare
EX31_RS18945 -0.6 -1.9 CatB-related O-acetyltransferase compare
EX31_RS01695 -0.6 -1.8 RusA family crossover junction endodeoxyribonuclease compare
EX31_RS10725 -0.6 -1.2 plasmid maintenance protein CcdB compare
EX31_RS19070 -0.6 -3.3 1-phosphofructokinase compare
EX31_RS13480 -0.6 -2.8 site-specific tyrosine recombinase XerD compare
EX31_RS20655 -0.5 -1.2 hypothetical protein compare
EX31_RS01265 -0.5 -1.9 GNAT family N-acetyltransferase compare
EX31_RS23415 -0.5 -3.6 citrate synthase compare
EX31_RS25095 -0.5 -1.3 hypothetical protein compare
EX31_RS21570 -0.5 -2.4 hypothetical protein compare
EX31_RS24780 -0.5 -2.3 YebY family protein compare
EX31_RS10340 -0.5 -1.3 GNAT family N-acetyltransferase compare
EX31_RS19575 -0.5 -4.2 colicin V production protein compare
EX31_RS03645 -0.5 -1.5 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
EX31_RS07380 -0.5 -1.0 redox-regulated ATPase YchF compare
EX31_RS19305 -0.5 -4.5 ribonucleoside-diphosphate reductase subunit alpha compare
EX31_RS16615 -0.5 -1.4 membrane protein compare
EX31_RS02260 -0.5 -2.8 chitin disaccharide deacetylase compare
EX31_RS10930 -0.5 -1.6 protein DsrB compare
EX31_RS22695 -0.5 -3.1 phosphoribosylformylglycinamidine cyclo-ligase compare
EX31_RS09995 -0.5 -1.4 YkgJ family cysteine cluster protein compare
EX31_RS04775 -0.5 -2.2 Hsp33 family molecular chaperone HslO compare
EX31_RS22080 -0.5 -3.3 peroxiredoxin C compare
EX31_RS22260 -0.5 -2.4 DNA-binding protein HU-beta compare
EX31_RS07470 -0.5 -1.4 hypothetical protein compare
EX31_RS07830 -0.5 -2.6 murein hydrolase activator NlpD compare
EX31_RS19150 -0.5 -1.9 hypothetical protein compare
EX31_RS11840 -0.5 -3.8 diacylglycerol kinase compare
EX31_RS02410 -0.5 -1.4 multidrug DMT transporter compare
EX31_RS15685 -0.5 -2.0 phage shock protein PspA compare
EX31_RS14220 -0.5 -2.0 met regulon transcriptional regulator MetJ compare
EX31_RS19700 -0.5 -1.6 phosphohistidine phosphatase SixA compare
EX31_RS23875 -0.5 -1.1 DUF1471 domain-containing protein compare
EX31_RS18925 -0.5 -2.2 ABC transporter ATP-binding protein compare
EX31_RS22770 -0.5 -2.0 esterase compare
EX31_RS19435 -0.5 -1.1 NADH-quinone oxidoreductase subunit A compare
EX31_RS25105 -0.5 -1.1 DUF2474 domain-containing protein compare
EX31_RS05245 -0.5 -1.5 PTS sugar transporter subunit IIB compare
EX31_RS17750 -0.5 -2.6 glutathione S-transferase family protein compare
EX31_RS24255 -0.4 -3.8 glucans biosynthesis glucosyltransferase MdoH compare
EX31_RS24600 -0.4 -1.2 hypothetical protein compare
EX31_RS05910 -0.4 -3.7 LacI family DNA-binding transcriptional regulator compare
EX31_RS20730 -0.4 -2.7 exodeoxyribonuclease V subunit alpha compare
EX31_RS09235 -0.4 -2.1 M55 family metallopeptidase compare
EX31_RS24645 -0.4 -1.6 DUF2591 domain-containing protein compare
EX31_RS22740 -0.4 -3.1 4-hydroxy-tetrahydrodipicolinate synthase compare
EX31_RS06515 -0.4 -2.7 two-component system sensor histidine kinase RstB compare
EX31_RS01040 -0.4 -2.1 serine hydrolase compare
EX31_RS11045 -0.4 -1.5 NADP-dependent oxidoreductase compare
EX31_RS17825 -0.4 -2.0 LacI family DNA-binding transcriptional regulator compare
EX31_RS15660 -0.4 -2.0 TIGR01620 family protein compare
EX31_RS24375 -0.4 -1.2 biofilm formation regulator BssS compare
EX31_RS11260 -0.4 -2.0 CidB/LrgB family autolysis modulator compare
EX31_RS10035 -0.4 -0.7 cardiolipin synthase compare
EX31_RS10955 -0.4 -1.1 AI-2E family transporter compare
EX31_RS25210 -0.4 -1.7 sulfite exporter TauE/SafE family protein compare
EX31_RS12785 -0.4 -2.8 aspartate carbamoyltransferase compare
EX31_RS21755 -0.4 -3.2 outer membrane protein assembly factor BamE compare
EX31_RS06800 -0.4 -1.3 ABC transporter permease compare
EX31_RS09670 -0.4 -1.3 bleomycin resistance protein compare
EX31_RS00585 -0.4 -1.5 multidrug efflux SMR transporter compare
EX31_RS11005 -0.4 -2.6 EAL domain-containing protein compare
EX31_RS24765 -0.4 -1.7 non-heme ferritin compare
EX31_RS01700 -0.4 -1.1 chromosome partitioning protein ParB compare
EX31_RS14170 -0.4 -3.3 DNA-binding transcriptional regulator OxyR compare
EX31_RS06640 -0.4 -2.5 ribulokinase compare
EX31_RS02085 -0.4 -1.8 SDR family oxidoreductase compare
EX31_RS08510 -0.4 -2.3 DEAD/DEAH family ATP-dependent RNA helicase compare
EX31_RS14730 -0.4 -0.5 DUF2756 domain-containing protein compare
EX31_RS24620 -0.4 -1.0 YebW family protein compare
EX31_RS16625 -0.4 -0.7 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
EX31_RS16690 -0.4 -1.7 CoA transferase compare
EX31_RS07530 -0.4 -1.7 ABC transporter ATP-binding protein compare
EX31_RS19795 -0.4 -0.9 hypothetical protein compare
EX31_RS09760 -0.4 -1.5 D-xylose ABC transporter substrate-binding protein compare
EX31_RS19890 -0.4 -2.2 hydrogenase nickel incorporation protein HypB compare
EX31_RS14500 -0.4 -2.1 orotate phosphoribosyltransferase compare
EX31_RS09820 -0.4 -1.7 fructose-6-phosphate aldolase compare
EX31_RS21980 -0.4 -2.6 AroM family protein compare
EX31_RS10355 -0.4 -1.6 NUDIX domain-containing protein compare
EX31_RS22315 -0.4 -1.7 P-II family nitrogen regulator compare
EX31_RS11130 -0.4 -1.3 ABC transporter permease compare
EX31_RS11290 -0.4 -2.2 flagellar basal-body rod protein FlgG compare
EX31_RS02215 -0.4 -1.6 isopentenyl-diphosphate Delta-isomerase compare
EX31_RS11230 -0.4 -2.2 amidohydrolase compare
EX31_RS07095 -0.4 -1.0 DUF1283 family protein compare
EX31_RS25725 -0.4 -0.6 hypothetical protein compare
EX31_RS23285 -0.4 -1.7 hypothetical protein compare
EX31_RS02455 -0.4 -1.7 VOC family protein compare
EX31_RS15165 -0.4 -1.9 tyrosine recombinase XerC compare
EX31_RS18120 -0.4 -1.2 aliphatic sulfonates ABC transporter ATP-binding protein compare
EX31_RS24250 -0.4 -2.1 glucan biosynthesis protein G compare
EX31_RS09835 -0.4 -1.5 DeoR/GlpR transcriptional regulator compare
EX31_RS02790 -0.4 -1.7 low molecular weight phosphotyrosine protein phosphatase compare
EX31_RS03035 -0.4 -2.6 LysE family transporter compare
EX31_RS02385 -0.4 -0.5 hypothetical protein compare
EX31_RS22785 -0.4 -0.9 YpfN family protein compare
EX31_RS24115 -0.4 -0.9 tRNA-Lys compare
EX31_RS06780 -0.4 -1.2 glucose 1-dehydrogenase compare
EX31_RS25665 -0.4 -1.0 DUF2502 domain-containing protein compare
EX31_RS17615 -0.3 -1.1 hypothetical protein compare
EX31_RS24875 -0.3 -2.5 RNA chaperone ProQ compare
EX31_RS14165 -0.3 -3.0 Si-specific NAD(P)(+) transhydrogenase compare
EX31_RS20610 -0.3 -1.3 nitrogen regulatory protein P-II compare
EX31_RS18935 -0.3 -2.0 sugar phosphotransferase compare
EX31_RS00625 -0.3 -0.5 YgdI/YgdR family lipoprotein compare
EX31_RS23470 -0.3 -1.0 cyd operon protein YbgE compare
EX31_RS13815 -0.3 -0.7 ribonuclease T compare
EX31_RS22435 -0.3 -1.8 Hha toxicity modulator TomB compare
EX31_RS07590 -0.3 -1.0 bifunctional chorismate mutase/prephenate dehydrogenase compare
EX31_RS23175 -0.3 -2.0 amino acid ABC transporter substrate-binding protein compare


Specific Phenotypes

None in this experiment

For Rahnella sp. WP5 in nl-ccm experiments