Experiment set4S131 for Rahnella sp. WP5

Compare to:

NF_with_fullN

200 most important genes:

  gene name fitness t score description  
EX31_RS21895 -5.5 -16.7 phosphoribosylformylglycinamidine synthase compare
EX31_RS22620 -5.4 -6.4 5-(carboxyamino)imidazole ribonucleotide synthase compare
EX31_RS03695 -5.4 -6.6 3-isopropylmalate dehydratase small subunit compare
EX31_RS13160 -5.3 -18.3 amino-acid N-acetyltransferase compare
EX31_RS11735 -5.2 -15.3 homoserine O-succinyltransferase compare
EX31_RS25370 -5.0 -19.8 HTH-type transcriptional regulator MetR compare
EX31_RS04035 -5.0 -17.8 phosphoserine phosphatase compare
EX31_RS22695 -5.0 -9.6 phosphoribosylformylglycinamidine cyclo-ligase compare
EX31_RS23245 -5.0 -26.3 asparagine synthase B compare
EX31_RS11460 -4.9 -3.4 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
EX31_RS21470 -4.9 -13.1 phosphoglycerate dehydrogenase compare
EX31_RS14190 -4.9 -17.0 N-acetyl-gamma-glutamyl-phosphate reductase compare
EX31_RS03685 -4.8 -21.2 3-isopropylmalate dehydrogenase compare
EX31_RS04390 -4.7 -3.3 DNA polymerase III subunit chi compare
EX31_RS22750 -4.7 -4.6 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
EX31_RS12510 -4.7 -18.4 FAD-dependent oxidoreductase compare
EX31_RS02690 -4.7 -9.0 pyrroline-5-carboxylate reductase compare
EX31_RS12515 -4.7 -33.4 glutamate synthase large subunit compare
EX31_RS12785 -4.7 -14.1 aspartate carbamoyltransferase compare
EX31_RS23500 -4.7 -4.5 peptidoglycan-associated lipoprotein Pal compare
EX31_RS03935 -4.7 -18.4 threonine synthase compare
EX31_RS03830 -4.7 -20.1 carbamoyl-phosphate synthase large subunit compare
EX31_RS14180 -4.6 -22.5 argininosuccinate lyase compare
EX31_RS13445 -4.6 -22.0 argininosuccinate synthase compare
EX31_RS19570 -4.6 -15.2 amidophosphoribosyltransferase compare
EX31_RS11455 -4.5 -6.2 imidazole glycerol phosphate synthase subunit HisH compare
EX31_RS15005 -4.5 -21.5 dihydroxy-acid dehydratase compare
EX31_RS23320 -4.4 -4.3 alpha-D-glucose phosphate-specific phosphoglucomutase compare
EX31_RS20450 -4.4 -6.7 IMP dehydrogenase compare
EX31_RS14185 -4.4 -11.6 acetylglutamate kinase compare
EX31_RS15020 -4.4 -22.1 ketol-acid reductoisomerase compare
EX31_RS03940 -4.3 -13.9 homoserine kinase compare
EX31_RS14500 -4.3 -13.6 orotate phosphoribosyltransferase compare
EX31_RS23495 -4.3 -5.1 Tol-Pal system protein TolB compare
EX31_RS03690 -4.3 -19.5 3-isopropylmalate dehydratase large subunit compare
EX31_RS22625 -4.3 -4.2 5-(carboxyamino)imidazole ribonucleotide mutase compare
EX31_RS11465 -4.3 -10.6 imidazole glycerol phosphate synthase subunit HisF compare
EX31_RS03835 -4.3 -11.3 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
EX31_RS23480 -4.2 -4.1 Tol-Pal system protein TolQ compare
EX31_RS11675 -4.2 -4.1 Holliday junction branch migration protein RuvA compare
EX31_RS16855 -4.2 -14.6 phosphoribosylamine--glycine ligase compare
EX31_RS20975 -4.2 -12.2 glutamate-5-semialdehyde dehydrogenase compare
EX31_RS14325 -4.2 -17.4 envelope stress sensor histidine kinase CpxA compare
EX31_RS13275 -4.2 -16.1 diaminopimelate decarboxylase compare
EX31_RS14405 -4.2 -2.9 lipopolysaccharide heptosyltransferase RfaC compare
EX31_RS21020 -4.2 -2.9 D-sedoheptulose 7-phosphate isomerase compare
EX31_RS16860 -4.1 -18.6 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
EX31_RS18255 -4.1 -4.0 3-phosphoserine/phosphohydroxythreonine transaminase compare
EX31_RS14215 -4.0 -23.8 cystathionine gamma-synthase compare
EX31_RS05785 -4.0 -5.5 superoxide dismutase [Mn] compare
EX31_RS03790 -3.9 -3.8 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
EX31_RS18095 -3.9 -6.4 quinone-dependent dihydroorotate dehydrogenase compare
EX31_RS11450 -3.9 -10.6 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
EX31_RS07830 -3.8 -10.8 murein hydrolase activator NlpD compare
EX31_RS07955 -3.8 -18.7 GTP diphosphokinase compare
EX31_RS03775 -3.8 -5.8 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
EX31_RS11540 -3.8 -3.7 dCTP deaminase compare
EX31_RS15095 -3.8 -4.7 O-antigen assembly polymerase compare
EX31_RS08720 -3.7 -19.4 3'(2'),5'-bisphosphate nucleotidase CysQ compare
EX31_RS07590 -3.7 -3.6 bifunctional chorismate mutase/prephenate dehydrogenase compare
EX31_RS24385 -3.7 -3.6 dihydroorotase compare
EX31_RS23485 -3.7 -2.5 colicin uptake protein TolR compare
EX31_RS09980 -3.7 -9.5 tryptophan synthase subunit alpha compare
EX31_RS09960 -3.6 -7.5 glutamine amidotransferase compare
EX31_RS11470 -3.6 -5.2 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
EX31_RS15880 -3.6 -11.0 nitrogen regulation protein NR(I) compare
EX31_RS23415 -3.6 -12.4 citrate synthase compare
EX31_RS11440 -3.5 -10.1 histidinol dehydrogenase compare
EX31_RS12825 -3.5 -11.8 ornithine carbamoyltransferase compare
EX31_RS09855 -3.5 -4.6 orotidine-5'-phosphate decarboxylase compare
EX31_RS04710 -3.4 -6.2 adenine-specific DNA-methyltransferase compare
EX31_RS14200 -3.4 -17.6 phosphoenolpyruvate carboxylase compare
EX31_RS03250 -3.4 -13.9 RNA polymerase-binding protein DksA compare
EX31_RS03680 -3.4 -12.6 2-isopropylmalate synthase compare
EX31_RS09975 -3.4 -11.2 tryptophan synthase subunit beta compare
EX31_RS11445 -3.3 -11.6 histidinol-phosphate transaminase compare
EX31_RS19655 -3.3 -7.3 beta-ketoacyl-ACP synthase I compare
EX31_RS14310 -3.3 -5.0 6-phosphofructokinase compare
EX31_RS14335 -3.2 -3.8 serine O-acetyltransferase compare
EX31_RS07585 -3.2 -10.1 bifunctional chorismate mutase/prephenate dehydratase compare
EX31_RS09970 -3.2 -10.4 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
EX31_RS20980 -3.2 -10.9 glutamate 5-kinase compare
EX31_RS09965 -3.2 -9.8 anthranilate phosphoribosyltransferase compare
EX31_RS09955 -3.2 -11.5 anthranilate synthase component 1 compare
EX31_RS03945 -3.1 -21.6 bifunctional aspartate kinase/homoserine dehydrogenase I compare
EX31_RS23490 -3.1 -2.1 cell envelope integrity protein TolA compare
EX31_RS11525 -3.1 -4.2 UTP--glucose-1-phosphate uridylyltransferase GalU compare
EX31_RS20495 -3.0 -5.8 outer membrane protein assembly factor BamB compare
EX31_RS14400 -3.0 -5.8 ADP-heptose--LPS heptosyltransferase RfaF compare
EX31_RS14205 -3.0 -14.6 methylenetetrahydrofolate reductase compare
EX31_RS21850 -3.0 -2.9 pyridoxine 5'-phosphate synthase compare
EX31_RS03035 -3.0 -11.8 LysE family transporter compare
EX31_RS18040 -2.9 -15.3 porin OmpA compare
EX31_RS24880 -2.9 -19.8 carboxy terminal-processing peptidase compare
EX31_RS18530 -2.9 -16.5 leucine-responsive transcriptional regulator Lrp compare
EX31_RS14340 -2.9 -2.0 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
EX31_RS14710 -2.8 -22.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase compare
EX31_RS03400 -2.7 -8.2 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
EX31_RS03030 -2.7 -15.0 helix-turn-helix transcriptional regulator compare
EX31_RS07895 -2.7 -13.1 phosphoadenylyl-sulfate reductase compare
EX31_RS21805 -2.6 -7.8 anti-sigma-E factor RseA compare
EX31_RS04630 -2.6 -16.6 aspartate aminotransferase family protein compare
EX31_RS14445 -2.5 -8.8 glycosyltransferase family 2 protein compare
EX31_RS08140 -2.5 -3.8 bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE compare
EX31_RS06055 -2.4 -4.3 phosphate ABC transporter ATP-binding protein PstB compare
EX31_RS05825 -2.4 -1.7 mannitol-1-phosphate 5-dehydrogenase compare
EX31_RS15085 -2.4 -6.4 lipid III flippase WzxE compare
EX31_RS10090 -2.3 -3.5 NAD-dependent epimerase compare
EX31_RS24450 -2.3 -4.6 aminodeoxychorismate lyase compare
EX31_RS07870 -2.2 -13.0 adenylyl-sulfate kinase compare
EX31_RS12875 -2.2 -2.6 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
EX31_RS15870 -2.2 -1.5 glutamate--ammonia ligase compare
EX31_RS24600 -2.2 -2.3 hypothetical protein compare
EX31_RS18525 -2.2 -3.6 DNA translocase FtsK compare
EX31_RS01260 -2.2 -2.1 YebG family protein compare
EX31_RS23895 -2.2 -5.9 TetR/AcrR family transcriptional regulator compare
EX31_RS08150 -2.1 -12.8 inorganic triphosphatase compare
EX31_RS14435 -2.1 -8.2 glycosyltransferase family 4 protein compare
EX31_RS15165 -2.1 -6.0 tyrosine recombinase XerC compare
EX31_RS19610 -2.1 -7.9 4-phosphoerythronate dehydrogenase PdxB compare
EX31_RS09890 -2.0 -11.7 HTH-type transcriptional regulator CysB compare
EX31_RS23440 -2.0 -2.7 2-oxoglutarate dehydrogenase E1 component compare
EX31_RS10035 -2.0 -2.4 cardiolipin synthase compare
EX31_RS13045 -2.0 -10.9 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
EX31_RS13480 -2.0 -7.4 site-specific tyrosine recombinase XerD compare
EX31_RS26000 -2.0 -1.9 GntR family transcriptional regulator compare
EX31_RS24725 -1.9 -6.3 aminodeoxychorismate synthase component 1 compare
EX31_RS20735 -1.9 -4.1 exodeoxyribonuclease V subunit beta compare
EX31_RS04105 -1.9 -3.2 helix-turn-helix domain-containing protein compare
EX31_RS15010 -1.9 -10.1 threonine ammonia-lyase, biosynthetic compare
EX31_RS14410 -1.9 -15.5 glycosyltransferase family 9 protein compare
EX31_RS01805 -1.8 -1.9 hypothetical protein compare
EX31_RS15910 -1.8 -8.9 thiol:disulfide interchange protein DsbA compare
EX31_RS07115 -1.8 -2.8 cysteine dioxygenase compare
EX31_RS20935 -1.7 -2.4 hypothetical protein compare
EX31_RS15155 -1.7 -3.1 diaminopimelate epimerase compare
EX31_RS04635 -1.7 -7.3 aminodeoxychorismate synthase component II compare
EX31_RS20185 -1.7 -4.9 phosphoenolpyruvate-protein phosphotransferase PtsI compare
EX31_RS24255 -1.7 -12.3 glucans biosynthesis glucosyltransferase MdoH compare
EX31_RS01970 -1.7 -1.5 hypothetical protein compare
EX31_RS22245 -1.7 -1.6 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
EX31_RS14195 -1.6 -13.8 acetylornithine deacetylase compare
EX31_RS12400 -1.6 -1.1 RNA polymerase factor sigma-54 compare
EX31_RS08515 -1.6 -12.8 lipoprotein NlpI compare
EX31_RS22430 -1.6 -1.3 hemolysin expression modulator Hha compare
EX31_RS25365 -1.6 -1.7 50S ribosomal protein L31 compare
EX31_RS07900 -1.6 -11.6 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
EX31_RS24325 -1.6 -3.3 LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferasee compare
EX31_RS10665 -1.6 -5.0 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase compare
EX31_RS07905 -1.5 -11.2 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
EX31_RS03570 -1.5 -2.3 DUF721 domain-containing protein compare
EX31_RS03040 -1.5 -6.1 hypothetical protein compare
EX31_RS20175 -1.5 -8.0 cysteine synthase A compare
EX31_RS19220 -1.5 -8.1 DUF3413 domain-containing protein compare
EX31_RS07475 -1.5 -1.5 hypothetical protein compare
EX31_RS21280 -1.5 -1.6 hydroxymyristoyl-ACP dehydratase compare
EX31_RS17640 -1.4 -1.8 TetR/AcrR family transcriptional regulator compare
EX31_RS23785 -1.4 -2.7 DUF262 domain-containing protein compare
EX31_RS05730 -1.4 -2.3 isochorismatase family protein compare
EX31_RS25295 -1.4 -1.9 GhoT/OrtT family toxin compare
EX31_RS15000 -1.4 -9.0 branched-chain amino acid transaminase compare
EX31_RS10115 -1.4 -7.2 formyltetrahydrofolate deformylase compare
EX31_RS24875 -1.4 -7.4 RNA chaperone ProQ compare
EX31_RS23315 -1.4 -5.2 replication initiation negative regulator SeqA compare
EX31_RS19600 -1.3 -6.1 tRNA pseudouridine(38-40) synthase TruA compare
EX31_RS11690 -1.3 -2.7 dihydroneopterin triphosphate diphosphatase compare
EX31_RS15530 -1.3 -1.7 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit compare
EX31_RS07880 -1.3 -10.9 sulfate adenylyltransferase subunit CysD compare
EX31_RS22250 -1.3 -2.4 ATP-dependent protease ATP-binding subunit ClpX compare
EX31_RS17285 -1.3 -3.5 carboxy-S-adenosyl-L-methionine synthase CmoA compare
EX31_RS10515 -1.3 -4.0 disulfide bond formation protein DsbB compare
EX31_RS10100 -1.3 -2.1 two-component system response regulator RssB compare
EX31_RS12385 -1.3 -9.6 RNase adapter RapZ compare
EX31_RS02625 -1.3 -1.8 hypothetical protein compare
EX31_RS10590 -1.2 -1.5 cell division topological specificity factor MinE compare
EX31_RS03645 -1.2 -2.8 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
EX31_RS19405 -1.2 -2.1 NADH-quinone oxidoreductase subunit NuoH compare
EX31_RS02515 -1.2 -0.8 PAS domain-containing protein compare
EX31_RS13845 -1.2 -6.9 cyclopropane fatty acyl phospholipid synthase compare
EX31_RS07745 -1.2 -3.1 S-ribosylhomocysteine lyase compare
EX31_RS07875 -1.2 -9.9 sulfate adenylyltransferase subunit CysN compare
EX31_RS09895 -1.2 -2.4 type I DNA topoisomerase compare
EX31_RS06000 -1.2 -3.6 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
EX31_RS14990 -1.2 -8.8 acetolactate synthase 2 catalytic subunit compare
EX31_RS15875 -1.2 -6.7 nitrogen regulation protein NR(II) compare
EX31_RS01510 -1.2 -2.3 DinI-like family protein compare
EX31_RS14220 -1.2 -1.8 met regulon transcriptional regulator MetJ compare
EX31_RS17955 -1.2 -3.5 SDR family oxidoreductase compare
EX31_RS07785 -1.1 -1.3 carbon storage regulator CsrA compare
EX31_RS12175 -1.1 -2.6 DNA-binding transcriptional regulator Fis compare
EX31_RS01695 -1.1 -1.9 RusA family crossover junction endodeoxyribonuclease compare
EX31_RS24250 -1.1 -6.0 glucan biosynthesis protein G compare
EX31_RS19310 -1.1 -7.1 ribonucleotide-diphosphate reductase subunit beta compare
EX31_RS06680 -1.1 -1.6 cellulose biosynthesis protein BcsF compare
EX31_RS03900 -1.1 -4.1 molecular chaperone DnaK compare
EX31_RS18370 -1.1 -1.7 tail protein X compare
EX31_RS19305 -1.1 -9.2 ribonucleoside-diphosphate reductase subunit alpha compare
EX31_RS01885 -1.1 -1.6 type IV secretion protein Rhs compare
EX31_RS19575 -1.1 -6.4 colicin V production protein compare
EX31_RS20190 -1.1 -1.1 PTS glucose transporter subunit IIA compare


Specific Phenotypes

For 3 genes in this experiment