Experiment set4S131 for Rahnella sp. WP5
NF_with_fullN
Group: nf_with_fullnMedia: NF_with_fullN
Culturing: RahnellaWP5_ML7, at 30 (C)
By: Doty lab on 1/12/24
Media components: 5 g/L Sucrose, 5 g/L D-Mannitol, 3.51 mM Sodium D,L-Lactate, 0.8 g/L Potassium phosphate dibasic, 0.2 g/L Potassium phosphate monobasic, 0.1 g/L Sodium Chloride, 0.025 g/L Sodium Molybdate Dihydrate, 0.028 g/L EDTA (disodium salt), 0.2 g/L Magnesium Sulfate Heptahydrate, 0.06 g/L Calcium chloride dihydrate, 1 g/L Ammonium chloride
Specific Phenotypes
For 3 genes in this experiment
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Nudix proteins (nucleoside triphosphate hydrolases) | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| NAD salvage pathway III (to nicotinamide riboside) | 3 | 3 | 1 |
| NAD salvage pathway II (PNC IV cycle) | 5 | 4 | 1 |
| NAD salvage pathway I (PNC VI cycle) | 7 | 5 | 1 |
| NAD salvage (plants) | 11 | 5 | 1 |