Experiment set4S129 for Rahnella sp. WP5

Compare to:

NF_with_fullN

200 most important genes:

  gene name fitness t score description  
EX31_RS25370 -5.3 -21.2 HTH-type transcriptional regulator MetR compare
EX31_RS03695 -5.3 -8.2 3-isopropylmalate dehydratase small subunit compare
EX31_RS12825 -5.2 -13.4 ornithine carbamoyltransferase compare
EX31_RS22625 -5.1 -3.5 5-(carboxyamino)imidazole ribonucleotide mutase compare
EX31_RS22695 -5.0 -9.6 phosphoribosylformylglycinamidine cyclo-ligase compare
EX31_RS21470 -5.0 -13.2 phosphoglycerate dehydrogenase compare
EX31_RS03690 -4.9 -19.2 3-isopropylmalate dehydratase large subunit compare
EX31_RS20450 -4.9 -4.7 IMP dehydrogenase compare
EX31_RS04390 -4.8 -3.3 DNA polymerase III subunit chi compare
EX31_RS03935 -4.8 -19.5 threonine synthase compare
EX31_RS12510 -4.8 -20.9 FAD-dependent oxidoreductase compare
EX31_RS03685 -4.8 -20.2 3-isopropylmalate dehydrogenase compare
EX31_RS22750 -4.8 -4.6 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
EX31_RS23245 -4.7 -27.4 asparagine synthase B compare
EX31_RS23480 -4.7 -3.3 Tol-Pal system protein TolQ compare
EX31_RS03830 -4.7 -20.5 carbamoyl-phosphate synthase large subunit compare
EX31_RS14185 -4.7 -11.2 acetylglutamate kinase compare
EX31_RS23500 -4.7 -4.6 peptidoglycan-associated lipoprotein Pal compare
EX31_RS12515 -4.7 -35.2 glutamate synthase large subunit compare
EX31_RS22620 -4.7 -8.9 5-(carboxyamino)imidazole ribonucleotide synthase compare
EX31_RS11455 -4.6 -6.3 imidazole glycerol phosphate synthase subunit HisH compare
EX31_RS21895 -4.6 -22.4 phosphoribosylformylglycinamidine synthase compare
EX31_RS15005 -4.6 -21.4 dihydroxy-acid dehydratase compare
EX31_RS15880 -4.5 -13.3 nitrogen regulation protein NR(I) compare
EX31_RS20980 -4.5 -10.7 glutamate 5-kinase compare
EX31_RS13445 -4.5 -24.0 argininosuccinate synthase compare
EX31_RS14215 -4.5 -24.5 cystathionine gamma-synthase compare
EX31_RS14190 -4.5 -16.7 N-acetyl-gamma-glutamyl-phosphate reductase compare
EX31_RS13275 -4.5 -15.9 diaminopimelate decarboxylase compare
EX31_RS20975 -4.5 -12.8 glutamate-5-semialdehyde dehydrogenase compare
EX31_RS04035 -4.4 -19.2 phosphoserine phosphatase compare
EX31_RS14180 -4.4 -22.1 argininosuccinate lyase compare
EX31_RS18095 -4.4 -6.0 quinone-dependent dihydroorotate dehydrogenase compare
EX31_RS11675 -4.4 -4.0 Holliday junction branch migration protein RuvA compare
EX31_RS15020 -4.4 -22.3 ketol-acid reductoisomerase compare
EX31_RS03940 -4.3 -15.3 homoserine kinase compare
EX31_RS11450 -4.3 -10.3 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
EX31_RS14500 -4.2 -13.8 orotate phosphoribosyltransferase compare
EX31_RS19570 -4.2 -16.4 amidophosphoribosyltransferase compare
EX31_RS11540 -4.2 -2.9 dCTP deaminase compare
EX31_RS13160 -4.2 -17.7 amino-acid N-acetyltransferase compare
EX31_RS07830 -4.2 -12.0 murein hydrolase activator NlpD compare
EX31_RS03835 -4.2 -12.0 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
EX31_RS18255 -4.1 -4.0 3-phosphoserine/phosphohydroxythreonine transaminase compare
EX31_RS11465 -4.1 -10.7 imidazole glycerol phosphate synthase subunit HisF compare
EX31_RS12785 -4.1 -15.5 aspartate carbamoyltransferase compare
EX31_RS02690 -4.1 -9.5 pyrroline-5-carboxylate reductase compare
EX31_RS11525 -4.0 -2.8 UTP--glucose-1-phosphate uridylyltransferase GalU compare
EX31_RS16855 -4.0 -14.4 phosphoribosylamine--glycine ligase compare
EX31_RS07955 -3.9 -18.8 GTP diphosphokinase compare
EX31_RS14310 -3.9 -3.8 6-phosphofructokinase compare
EX31_RS23320 -3.9 -5.9 alpha-D-glucose phosphate-specific phosphoglucomutase compare
EX31_RS16860 -3.9 -18.8 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
EX31_RS14325 -3.8 -17.4 envelope stress sensor histidine kinase CpxA compare
EX31_RS23495 -3.8 -6.9 Tol-Pal system protein TolB compare
EX31_RS08720 -3.8 -16.9 3'(2'),5'-bisphosphate nucleotidase CysQ compare
EX31_RS11735 -3.8 -15.5 homoserine O-succinyltransferase compare
EX31_RS09970 -3.8 -11.9 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
EX31_RS24385 -3.7 -3.6 dihydroorotase compare
EX31_RS14200 -3.7 -19.4 phosphoenolpyruvate carboxylase compare
EX31_RS23485 -3.7 -2.5 colicin uptake protein TolR compare
EX31_RS23415 -3.7 -12.1 citrate synthase compare
EX31_RS03035 -3.6 -14.6 LysE family transporter compare
EX31_RS14335 -3.6 -3.5 serine O-acetyltransferase compare
EX31_RS05785 -3.6 -5.9 superoxide dismutase [Mn] compare
EX31_RS09955 -3.5 -12.1 anthranilate synthase component 1 compare
EX31_RS21020 -3.5 -3.4 D-sedoheptulose 7-phosphate isomerase compare
EX31_RS11440 -3.5 -9.8 histidinol dehydrogenase compare
EX31_RS07590 -3.5 -4.1 bifunctional chorismate mutase/prephenate dehydrogenase compare
EX31_RS09975 -3.5 -11.1 tryptophan synthase subunit beta compare
EX31_RS09960 -3.4 -8.1 glutamine amidotransferase compare
EX31_RS18040 -3.4 -15.2 porin OmpA compare
EX31_RS14445 -3.4 -10.1 glycosyltransferase family 2 protein compare
EX31_RS14400 -3.3 -6.8 ADP-heptose--LPS heptosyltransferase RfaF compare
EX31_RS07585 -3.3 -10.0 bifunctional chorismate mutase/prephenate dehydratase compare
EX31_RS11470 -3.3 -4.4 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
EX31_RS03250 -3.3 -11.5 RNA polymerase-binding protein DksA compare
EX31_RS09980 -3.3 -9.7 tryptophan synthase subunit alpha compare
EX31_RS09855 -3.3 -4.5 orotidine-5'-phosphate decarboxylase compare
EX31_RS11445 -3.3 -12.0 histidinol-phosphate transaminase compare
EX31_RS03775 -3.2 -5.3 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
EX31_RS09965 -3.2 -10.2 anthranilate phosphoribosyltransferase compare
EX31_RS03030 -3.1 -14.6 helix-turn-helix transcriptional regulator compare
EX31_RS23490 -3.1 -2.2 cell envelope integrity protein TolA compare
EX31_RS03680 -3.1 -12.6 2-isopropylmalate synthase compare
EX31_RS03945 -3.1 -22.8 bifunctional aspartate kinase/homoserine dehydrogenase I compare
EX31_RS11460 -3.1 -4.0 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
EX31_RS22430 -3.1 -2.1 hemolysin expression modulator Hha compare
EX31_RS14205 -3.0 -17.5 methylenetetrahydrofolate reductase compare
EX31_RS07895 -3.0 -13.4 phosphoadenylyl-sulfate reductase compare
EX31_RS03790 -3.0 -4.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
EX31_RS18525 -3.0 -3.5 DNA translocase FtsK compare
EX31_RS14710 -3.0 -23.4 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase compare
EX31_RS14405 -2.9 -3.0 lipopolysaccharide heptosyltransferase RfaC compare
EX31_RS10090 -2.9 -4.0 NAD-dependent epimerase compare
EX31_RS14340 -2.9 -2.0 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
EX31_RS18530 -2.9 -16.1 leucine-responsive transcriptional regulator Lrp compare
EX31_RS04710 -2.9 -5.9 adenine-specific DNA-methyltransferase compare
EX31_RS24880 -2.8 -19.0 carboxy terminal-processing peptidase compare
EX31_RS04630 -2.8 -18.6 aspartate aminotransferase family protein compare
EX31_RS20495 -2.7 -6.5 outer membrane protein assembly factor BamB compare
EX31_RS04105 -2.7 -3.5 helix-turn-helix domain-containing protein compare
EX31_RS08745 -2.6 -2.1 50S ribosomal protein L9 compare
EX31_RS08140 -2.6 -4.0 bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE compare
EX31_RS09425 -2.6 -2.1 L-cystine ABC transporter ATP-binding protein YecC compare
EX31_RS19610 -2.5 -9.2 4-phosphoerythronate dehydrogenase PdxB compare
EX31_RS07380 -2.5 -2.8 redox-regulated ATPase YchF compare
EX31_RS05825 -2.5 -1.7 mannitol-1-phosphate 5-dehydrogenase compare
EX31_RS07870 -2.5 -12.9 adenylyl-sulfate kinase compare
EX31_RS23440 -2.5 -2.4 2-oxoglutarate dehydrogenase E1 component compare
EX31_RS09890 -2.4 -12.0 HTH-type transcriptional regulator CysB compare
EX31_RS13480 -2.4 -5.6 site-specific tyrosine recombinase XerD compare
EX31_RS15095 -2.3 -4.4 O-antigen assembly polymerase compare
EX31_RS13815 -2.3 -1.6 ribonuclease T compare
EX31_RS15085 -2.3 -5.4 lipid III flippase WzxE compare
EX31_RS24325 -2.2 -4.0 LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferasee compare
EX31_RS21805 -2.2 -5.7 anti-sigma-E factor RseA compare
EX31_RS10035 -2.1 -2.2 cardiolipin synthase compare
EX31_RS14410 -2.1 -17.2 glycosyltransferase family 9 protein compare
EX31_RS08150 -2.1 -12.3 inorganic triphosphatase compare
EX31_RS20735 -2.1 -4.2 exodeoxyribonuclease V subunit beta compare
EX31_RS12875 -2.0 -2.8 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
EX31_RS14435 -2.0 -8.4 glycosyltransferase family 4 protein compare
EX31_RS24725 -2.0 -7.7 aminodeoxychorismate synthase component 1 compare
EX31_RS13045 -2.0 -11.2 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
EX31_RS03400 -2.0 -7.1 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
EX31_RS15010 -2.0 -10.7 threonine ammonia-lyase, biosynthetic compare
EX31_RS10665 -1.9 -5.5 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase compare
EX31_RS15165 -1.9 -8.0 tyrosine recombinase XerC compare
EX31_RS15870 -1.8 -2.1 glutamate--ammonia ligase compare
EX31_RS14195 -1.8 -14.1 acetylornithine deacetylase compare
EX31_RS15910 -1.7 -10.2 thiol:disulfide interchange protein DsbA compare
EX31_RS07785 -1.7 -1.3 carbon storage regulator CsrA compare
EX31_RS03570 -1.7 -2.4 DUF721 domain-containing protein compare
EX31_RS04635 -1.7 -8.9 aminodeoxychorismate synthase component II compare
EX31_RS24250 -1.7 -8.3 glucan biosynthesis protein G compare
EX31_RS23895 -1.7 -5.3 TetR/AcrR family transcriptional regulator compare
EX31_RS02625 -1.7 -2.3 hypothetical protein compare
EX31_RS08515 -1.7 -13.2 lipoprotein NlpI compare
EX31_RS20175 -1.6 -9.6 cysteine synthase A compare
EX31_RS12400 -1.6 -1.1 RNA polymerase factor sigma-54 compare
EX31_RS09170 -1.6 -3.2 ABC transporter ATP-binding protein compare
EX31_RS07900 -1.6 -11.7 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
EX31_RS07905 -1.6 -12.5 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
EX31_RS24450 -1.6 -2.8 aminodeoxychorismate lyase compare
EX31_RS03040 -1.6 -6.2 hypothetical protein compare
EX31_RS22245 -1.6 -1.8 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
EX31_RS10115 -1.6 -8.3 formyltetrahydrofolate deformylase compare
EX31_RS02695 -1.5 -3.6 YggT family protein compare
EX31_RS20185 -1.5 -4.9 phosphoenolpyruvate-protein phosphotransferase PtsI compare
EX31_RS15000 -1.5 -9.1 branched-chain amino acid transaminase compare
EX31_RS24875 -1.5 -8.0 RNA chaperone ProQ compare
EX31_RS23785 -1.4 -2.9 DUF262 domain-containing protein compare
EX31_RS21850 -1.4 -1.8 pyridoxine 5'-phosphate synthase compare
EX31_RS12385 -1.4 -10.3 RNase adapter RapZ compare
EX31_RS03900 -1.4 -4.3 molecular chaperone DnaK compare
EX31_RS01280 -1.4 -2.0 SgcJ/EcaC family oxidoreductase compare
EX31_RS09670 -1.4 -2.3 bleomycin resistance protein compare
EX31_RS11490 -1.4 -3.5 glycosyltransferase compare
EX31_RS14730 -1.4 -1.0 DUF2756 domain-containing protein compare
EX31_RS07880 -1.4 -11.9 sulfate adenylyltransferase subunit CysD compare
EX31_RS05040 -1.4 -3.2 helix-turn-helix domain-containing protein compare
EX31_RS19655 -1.4 -4.6 beta-ketoacyl-ACP synthase I compare
EX31_RS24255 -1.4 -9.9 glucans biosynthesis glucosyltransferase MdoH compare
EX31_RS22250 -1.4 -2.4 ATP-dependent protease ATP-binding subunit ClpX compare
EX31_RS19310 -1.3 -9.0 ribonucleotide-diphosphate reductase subunit beta compare
EX31_RS20180 -1.3 -2.2 phosphocarrier protein Hpr compare
EX31_RS13845 -1.3 -7.0 cyclopropane fatty acyl phospholipid synthase compare
EX31_RS10590 -1.3 -1.5 cell division topological specificity factor MinE compare
EX31_RS19220 -1.3 -7.2 DUF3413 domain-containing protein compare
EX31_RS01530 -1.3 -1.0 hypothetical protein compare
EX31_RS06520 -1.3 -5.6 two-component system response regulator RstA compare
EX31_RS15875 -1.2 -6.7 nitrogen regulation protein NR(II) compare
EX31_RS25690 -1.2 -2.3 tyrosine-type recombinase/integrase compare
EX31_RS04725 -1.2 -4.1 shikimate kinase AroK compare
EX31_RS14990 -1.2 -9.1 acetolactate synthase 2 catalytic subunit compare
EX31_RS14220 -1.2 -1.7 met regulon transcriptional regulator MetJ compare
EX31_RS05485 -1.2 -7.4 endoglucanase compare
EX31_RS25375 -1.2 -2.1 ilv operon leader peptide compare
EX31_RS02530 -1.2 -1.6 ABC transporter ATP-binding protein compare
EX31_RS10030 -1.2 -1.8 YciY family protein compare
EX31_RS10020 -1.2 -1.6 YciI family protein compare
EX31_RS12240 -1.2 -1.9 rod shape-determining protein MreC compare
EX31_RS08825 -1.2 -8.3 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
EX31_RS07115 -1.2 -1.7 cysteine dioxygenase compare
EX31_RS10780 -1.2 -6.4 L,D-transpeptidase family protein compare
EX31_RS19305 -1.2 -9.8 ribonucleoside-diphosphate reductase subunit alpha compare
EX31_RS02520 -1.1 -1.3 sigma-54-dependent Fis family transcriptional regulator compare
EX31_RS07595 -1.1 -5.6 3-deoxy-7-phosphoheptulonate synthase compare
EX31_RS15155 -1.1 -2.2 diaminopimelate epimerase compare
EX31_RS09580 -1.1 -1.4 flagellar motor switch protein FliN compare
EX31_RS07875 -1.1 -9.1 sulfate adenylyltransferase subunit CysN compare
EX31_RS01920 -1.1 -2.3 hypothetical protein compare
EX31_RS13870 -1.1 -1.2 pyruvate kinase PykF compare
EX31_RS03770 -1.1 -7.5 peptidylprolyl isomerase SurA compare
EX31_RS19600 -1.1 -5.6 tRNA pseudouridine(38-40) synthase TruA compare
EX31_RS06140 -1.1 -7.8 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
EX31_RS25295 -1.1 -1.9 GhoT/OrtT family toxin compare
EX31_RS06055 -1.1 -2.8 phosphate ABC transporter ATP-binding protein PstB compare
EX31_RS11010 -1.0 -0.8 DgsA anti-repressor MtfA compare


Specific Phenotypes

For 5 genes in this experiment