Experiment set4S128 for Rahnella sp. WP5

Compare to:

NF_with_fullN

200 most important genes:

  gene name fitness t score description  
EX31_RS11455 -5.6 -3.9 imidazole glycerol phosphate synthase subunit HisH compare
EX31_RS02690 -5.3 -9.6 pyrroline-5-carboxylate reductase compare
EX31_RS14180 -5.3 -24.7 argininosuccinate lyase compare
EX31_RS14190 -5.3 -15.5 N-acetyl-gamma-glutamyl-phosphate reductase compare
EX31_RS03695 -5.3 -7.2 3-isopropylmalate dehydratase small subunit compare
EX31_RS21470 -5.2 -12.2 phosphoglycerate dehydrogenase compare
EX31_RS03690 -5.2 -19.3 3-isopropylmalate dehydratase large subunit compare
EX31_RS25370 -5.2 -19.2 HTH-type transcriptional regulator MetR compare
EX31_RS12515 -5.2 -36.4 glutamate synthase large subunit compare
EX31_RS21895 -5.1 -19.9 phosphoribosylformylglycinamidine synthase compare
EX31_RS23500 -5.0 -3.5 peptidoglycan-associated lipoprotein Pal compare
EX31_RS04035 -5.0 -18.5 phosphoserine phosphatase compare
EX31_RS09955 -5.0 -10.6 anthranilate synthase component 1 compare
EX31_RS23245 -4.9 -27.0 asparagine synthase B compare
EX31_RS12510 -4.9 -20.7 FAD-dependent oxidoreductase compare
EX31_RS19570 -4.9 -14.5 amidophosphoribosyltransferase compare
EX31_RS03685 -4.9 -19.0 3-isopropylmalate dehydrogenase compare
EX31_RS12785 -4.8 -14.3 aspartate carbamoyltransferase compare
EX31_RS13445 -4.8 -24.6 argininosuccinate synthase compare
EX31_RS11735 -4.8 -15.5 homoserine O-succinyltransferase compare
EX31_RS03830 -4.7 -19.9 carbamoyl-phosphate synthase large subunit compare
EX31_RS22620 -4.7 -8.5 5-(carboxyamino)imidazole ribonucleotide synthase compare
EX31_RS04390 -4.7 -3.3 DNA polymerase III subunit chi compare
EX31_RS23480 -4.7 -3.3 Tol-Pal system protein TolQ compare
EX31_RS22695 -4.7 -10.5 phosphoribosylformylglycinamidine cyclo-ligase compare
EX31_RS09980 -4.7 -9.0 tryptophan synthase subunit alpha compare
EX31_RS15020 -4.7 -23.2 ketol-acid reductoisomerase compare
EX31_RS22750 -4.7 -4.5 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
EX31_RS14185 -4.6 -14.0 acetylglutamate kinase compare
EX31_RS11465 -4.6 -10.7 imidazole glycerol phosphate synthase subunit HisF compare
EX31_RS03940 -4.5 -13.5 homoserine kinase compare
EX31_RS14500 -4.5 -13.8 orotate phosphoribosyltransferase compare
EX31_RS07830 -4.5 -11.1 murein hydrolase activator NlpD compare
EX31_RS15005 -4.4 -22.0 dihydroxy-acid dehydratase compare
EX31_RS14215 -4.4 -25.0 cystathionine gamma-synthase compare
EX31_RS20450 -4.4 -6.8 IMP dehydrogenase compare
EX31_RS13160 -4.4 -18.2 amino-acid N-acetyltransferase compare
EX31_RS23320 -4.4 -4.3 alpha-D-glucose phosphate-specific phosphoglucomutase compare
EX31_RS23495 -4.4 -5.2 Tol-Pal system protein TolB compare
EX31_RS09975 -4.3 -11.6 tryptophan synthase subunit beta compare
EX31_RS18255 -4.3 -4.2 3-phosphoserine/phosphohydroxythreonine transaminase compare
EX31_RS03935 -4.3 -17.4 threonine synthase compare
EX31_RS03835 -4.3 -11.0 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
EX31_RS12825 -4.3 -11.3 ornithine carbamoyltransferase compare
EX31_RS03775 -4.3 -5.0 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
EX31_RS05785 -4.2 -5.7 superoxide dismutase [Mn] compare
EX31_RS15880 -4.2 -12.7 nitrogen regulation protein NR(I) compare
EX31_RS23415 -4.2 -12.6 citrate synthase compare
EX31_RS07590 -4.2 -2.9 bifunctional chorismate mutase/prephenate dehydrogenase compare
EX31_RS14405 -4.1 -2.8 lipopolysaccharide heptosyltransferase RfaC compare
EX31_RS16855 -4.1 -13.6 phosphoribosylamine--glycine ligase compare
EX31_RS11440 -4.1 -10.8 histidinol dehydrogenase compare
EX31_RS13275 -4.1 -16.7 diaminopimelate decarboxylase compare
EX31_RS07955 -4.0 -18.2 GTP diphosphokinase compare
EX31_RS18095 -4.0 -6.7 quinone-dependent dihydroorotate dehydrogenase compare
EX31_RS14325 -4.0 -18.6 envelope stress sensor histidine kinase CpxA compare
EX31_RS11525 -3.9 -2.7 UTP--glucose-1-phosphate uridylyltransferase GalU compare
EX31_RS20975 -3.9 -12.6 glutamate-5-semialdehyde dehydrogenase compare
EX31_RS21850 -3.9 -2.7 pyridoxine 5'-phosphate synthase compare
EX31_RS16860 -3.9 -17.6 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
EX31_RS14335 -3.9 -2.7 serine O-acetyltransferase compare
EX31_RS20980 -3.9 -9.4 glutamate 5-kinase compare
EX31_RS08720 -3.9 -18.2 3'(2'),5'-bisphosphate nucleotidase CysQ compare
EX31_RS11450 -3.8 -11.1 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
EX31_RS09855 -3.8 -4.5 orotidine-5'-phosphate decarboxylase compare
EX31_RS08140 -3.8 -2.6 bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE compare
EX31_RS09960 -3.8 -8.1 glutamine amidotransferase compare
EX31_RS11460 -3.8 -4.5 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
EX31_RS09965 -3.8 -9.7 anthranilate phosphoribosyltransferase compare
EX31_RS14200 -3.7 -20.1 phosphoenolpyruvate carboxylase compare
EX31_RS09970 -3.7 -11.7 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
EX31_RS22625 -3.7 -4.4 5-(carboxyamino)imidazole ribonucleotide mutase compare
EX31_RS23485 -3.7 -2.5 colicin uptake protein TolR compare
EX31_RS03680 -3.7 -12.5 2-isopropylmalate synthase compare
EX31_RS11445 -3.6 -12.2 histidinol-phosphate transaminase compare
EX31_RS03030 -3.5 -13.7 helix-turn-helix transcriptional regulator compare
EX31_RS15085 -3.5 -7.1 lipid III flippase WzxE compare
EX31_RS11675 -3.5 -3.7 Holliday junction branch migration protein RuvA compare
EX31_RS03250 -3.5 -11.4 RNA polymerase-binding protein DksA compare
EX31_RS03035 -3.5 -12.7 LysE family transporter compare
EX31_RS20180 -3.4 -3.3 phosphocarrier protein Hpr compare
EX31_RS03945 -3.4 -22.8 bifunctional aspartate kinase/homoserine dehydrogenase I compare
EX31_RS14710 -3.3 -24.7 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase compare
EX31_RS21020 -3.3 -3.2 D-sedoheptulose 7-phosphate isomerase compare
EX31_RS14400 -3.3 -6.0 ADP-heptose--LPS heptosyltransferase RfaF compare
EX31_RS03790 -3.3 -4.3 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
EX31_RS24385 -3.3 -4.5 dihydroorotase compare
EX31_RS18530 -3.3 -17.1 leucine-responsive transcriptional regulator Lrp compare
EX31_RS14310 -3.3 -5.0 6-phosphofructokinase compare
EX31_RS18040 -3.2 -16.0 porin OmpA compare
EX31_RS14445 -3.1 -9.6 glycosyltransferase family 2 protein compare
EX31_RS23490 -3.1 -2.1 cell envelope integrity protein TolA compare
EX31_RS10090 -3.1 -3.7 NAD-dependent epimerase compare
EX31_RS07585 -3.1 -10.1 bifunctional chorismate mutase/prephenate dehydratase compare
EX31_RS24880 -3.1 -19.5 carboxy terminal-processing peptidase compare
EX31_RS04630 -3.0 -20.1 aspartate aminotransferase family protein compare
EX31_RS14205 -3.0 -15.8 methylenetetrahydrofolate reductase compare
EX31_RS07895 -2.9 -12.8 phosphoadenylyl-sulfate reductase compare
EX31_RS15095 -2.9 -5.3 O-antigen assembly polymerase compare
EX31_RS11470 -2.9 -4.7 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
EX31_RS03400 -2.8 -8.2 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
EX31_RS14340 -2.8 -1.9 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
EX31_RS09890 -2.8 -15.3 HTH-type transcriptional regulator CysB compare
EX31_RS19655 -2.8 -7.6 beta-ketoacyl-ACP synthase I compare
EX31_RS23440 -2.7 -1.9 2-oxoglutarate dehydrogenase E1 component compare
EX31_RS14435 -2.6 -9.7 glycosyltransferase family 4 protein compare
EX31_RS21805 -2.4 -7.8 anti-sigma-E factor RseA compare
EX31_RS10035 -2.4 -2.3 cardiolipin synthase compare
EX31_RS19610 -2.4 -9.2 4-phosphoerythronate dehydrogenase PdxB compare
EX31_RS05825 -2.4 -1.6 mannitol-1-phosphate 5-dehydrogenase compare
EX31_RS14410 -2.3 -18.2 glycosyltransferase family 9 protein compare
EX31_RS07870 -2.3 -10.7 adenylyl-sulfate kinase compare
EX31_RS20495 -2.3 -6.6 outer membrane protein assembly factor BamB compare
EX31_RS13815 -2.3 -1.5 ribonuclease T compare
EX31_RS07475 -2.3 -2.1 hypothetical protein compare
EX31_RS02695 -2.3 -5.3 YggT family protein compare
EX31_RS08150 -2.3 -14.9 inorganic triphosphatase compare
EX31_RS18525 -2.2 -3.4 DNA translocase FtsK compare
EX31_RS10590 -2.2 -1.7 cell division topological specificity factor MinE compare
EX31_RS15010 -2.2 -10.8 threonine ammonia-lyase, biosynthetic compare
EX31_RS04635 -2.2 -9.6 aminodeoxychorismate synthase component II compare
EX31_RS25910 -2.1 -1.6 hypothetical protein compare
EX31_RS13045 -2.1 -11.2 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
EX31_RS22430 -2.1 -1.9 hemolysin expression modulator Hha compare
EX31_RS24725 -2.1 -7.3 aminodeoxychorismate synthase component 1 compare
EX31_RS07380 -2.0 -2.7 redox-regulated ATPase YchF compare
EX31_RS11540 -1.9 -4.2 dCTP deaminase compare
EX31_RS10100 -1.9 -2.9 two-component system response regulator RssB compare
EX31_RS17640 -1.9 -2.1 TetR/AcrR family transcriptional regulator compare
EX31_RS04710 -1.9 -4.6 adenine-specific DNA-methyltransferase compare
EX31_RS14195 -1.9 -13.7 acetylornithine deacetylase compare
EX31_RS20735 -1.9 -3.9 exodeoxyribonuclease V subunit beta compare
EX31_RS15870 -1.8 -1.7 glutamate--ammonia ligase compare
EX31_RS13480 -1.8 -6.8 site-specific tyrosine recombinase XerD compare
EX31_RS07900 -1.8 -11.9 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
EX31_RS08515 -1.8 -13.5 lipoprotein NlpI compare
EX31_RS19435 -1.7 -3.1 NADH-quinone oxidoreductase subunit A compare
EX31_RS20175 -1.7 -10.4 cysteine synthase A compare
EX31_RS06055 -1.7 -3.7 phosphate ABC transporter ATP-binding protein PstB compare
EX31_RS12875 -1.7 -2.6 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
EX31_RS24875 -1.7 -7.6 RNA chaperone ProQ compare
EX31_RS10665 -1.7 -4.2 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase compare
EX31_RS04725 -1.7 -5.2 shikimate kinase AroK compare
EX31_RS23785 -1.7 -2.7 DUF262 domain-containing protein compare
EX31_RS04105 -1.7 -2.2 helix-turn-helix domain-containing protein compare
EX31_RS08745 -1.7 -1.7 50S ribosomal protein L9 compare
EX31_RS18370 -1.7 -2.0 tail protein X compare
EX31_RS10115 -1.6 -9.5 formyltetrahydrofolate deformylase compare
EX31_RS22250 -1.6 -2.2 ATP-dependent protease ATP-binding subunit ClpX compare
EX31_RS24255 -1.6 -11.4 glucans biosynthesis glucosyltransferase MdoH compare
EX31_RS03040 -1.6 -5.2 hypothetical protein compare
EX31_RS01695 -1.6 -2.2 RusA family crossover junction endodeoxyribonuclease compare
EX31_RS12400 -1.5 -1.1 RNA polymerase factor sigma-54 compare
EX31_RS19220 -1.5 -9.8 DUF3413 domain-containing protein compare
EX31_RS09580 -1.5 -1.2 flagellar motor switch protein FliN compare
EX31_RS12385 -1.5 -10.5 RNase adapter RapZ compare
EX31_RS24250 -1.5 -7.9 glucan biosynthesis protein G compare
EX31_RS10020 -1.5 -1.8 YciI family protein compare
EX31_RS05485 -1.5 -7.5 endoglucanase compare
EX31_RS07905 -1.5 -11.3 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
EX31_RS15000 -1.5 -9.3 branched-chain amino acid transaminase compare
EX31_RS01885 -1.5 -1.7 type IV secretion protein Rhs compare
EX31_RS20185 -1.5 -4.5 phosphoenolpyruvate-protein phosphotransferase PtsI compare
EX31_RS23895 -1.4 -4.6 TetR/AcrR family transcriptional regulator compare
EX31_RS15910 -1.4 -7.1 thiol:disulfide interchange protein DsbA compare
EX31_RS24325 -1.4 -3.2 LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferasee compare
EX31_RS25375 -1.4 -2.9 ilv operon leader peptide compare
EX31_RS02740 -1.4 -1.4 oxidative damage protection protein compare
EX31_RS04925 -1.4 -3.5 Fe-S biogenesis protein NfuA compare
EX31_RS10190 -1.4 -2.4 glycosyltransferase compare
EX31_RS17285 -1.4 -3.2 carboxy-S-adenosyl-L-methionine synthase CmoA compare
EX31_RS24450 -1.4 -2.0 aminodeoxychorismate lyase compare
EX31_RS19310 -1.4 -9.7 ribonucleotide-diphosphate reductase subunit beta compare
EX31_RS02365 -1.4 -1.2 hypothetical protein compare
EX31_RS15165 -1.4 -5.2 tyrosine recombinase XerC compare
EX31_RS24855 -1.4 -4.5 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF compare
EX31_RS07880 -1.3 -10.8 sulfate adenylyltransferase subunit CysD compare
EX31_RS14990 -1.3 -9.5 acetolactate synthase 2 catalytic subunit compare
EX31_RS12175 -1.3 -2.8 DNA-binding transcriptional regulator Fis compare
EX31_RS07785 -1.3 -1.5 carbon storage regulator CsrA compare
EX31_RS00170 -1.3 -2.8 DUF1471 domain-containing protein compare
EX31_RS24380 -1.3 -2.4 DNA damage-inducible protein I compare
EX31_RS09425 -1.3 -1.8 L-cystine ABC transporter ATP-binding protein YecC compare
EX31_RS07875 -1.3 -10.6 sulfate adenylyltransferase subunit CysN compare
EX31_RS13845 -1.3 -6.9 cyclopropane fatty acyl phospholipid synthase compare
EX31_RS19600 -1.3 -6.1 tRNA pseudouridine(38-40) synthase TruA compare
EX31_RS11335 -1.3 -1.6 flagellar protein FlhE compare
EX31_RS16510 -1.2 -7.6 EAL domain-containing protein compare
EX31_RS09585 -1.2 -1.4 flagellar biosynthetic protein FliO compare
EX31_RS06000 -1.2 -4.4 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
EX31_RS19375 -1.2 -3.9 NADH-quinone oxidoreductase subunit NuoN compare
EX31_RS19305 -1.2 -9.5 ribonucleoside-diphosphate reductase subunit alpha compare
EX31_RS08825 -1.2 -7.9 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
EX31_RS06595 -1.2 -1.9 electron transport complex subunit E compare
EX31_RS03310 -1.2 -2.1 hypothetical protein compare
EX31_RS15875 -1.2 -6.3 nitrogen regulation protein NR(II) compare
EX31_RS06140 -1.2 -7.4 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
EX31_RS06065 -1.1 -6.0 phosphate ABC transporter permease PstC compare
EX31_RS15655 -1.1 -1.7 hypothetical protein compare
EX31_RS06895 -1.1 -3.1 HlyD family secretion protein compare


Specific Phenotypes

For 9 genes in this experiment