Experiment set4S123 for Rahnella sp. WP5

Compare to:

NF_with10percent_fullN

200 most important genes:

  gene name fitness t score description  
EX31_RS16855 -4.8 -18.3 phosphoribosylamine--glycine ligase compare
EX31_RS02690 -4.7 -9.5 pyrroline-5-carboxylate reductase compare
EX31_RS23245 -4.6 -27.4 asparagine synthase B compare
EX31_RS20980 -4.4 -10.1 glutamate 5-kinase compare
EX31_RS04035 -4.3 -19.1 phosphoserine phosphatase compare
EX31_RS25370 -4.2 -18.5 HTH-type transcriptional regulator MetR compare
EX31_RS21470 -4.2 -14.4 phosphoglycerate dehydrogenase compare
EX31_RS11525 -4.2 -2.9 UTP--glucose-1-phosphate uridylyltransferase GalU compare
EX31_RS13445 -4.1 -21.5 argininosuccinate synthase compare
EX31_RS11470 -4.1 -5.9 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
EX31_RS21895 -4.1 -22.1 phosphoribosylformylglycinamidine synthase compare
EX31_RS12510 -4.0 -19.6 FAD-dependent oxidoreductase compare
EX31_RS03685 -4.0 -19.7 3-isopropylmalate dehydrogenase compare
EX31_RS15005 -4.0 -20.3 dihydroxy-acid dehydratase compare
EX31_RS15880 -4.0 -13.3 nitrogen regulation protein NR(I) compare
EX31_RS12515 -3.9 -30.3 glutamate synthase large subunit compare
EX31_RS03690 -3.9 -18.9 3-isopropylmalate dehydratase large subunit compare
EX31_RS19570 -3.9 -16.6 amidophosphoribosyltransferase compare
EX31_RS14185 -3.9 -11.9 acetylglutamate kinase compare
EX31_RS16860 -3.9 -23.6 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
EX31_RS03935 -3.8 -16.5 threonine synthase compare
EX31_RS03835 -3.8 -11.7 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
EX31_RS15020 -3.8 -22.1 ketol-acid reductoisomerase compare
EX31_RS09960 -3.8 -9.3 glutamine amidotransferase compare
EX31_RS09980 -3.7 -10.2 tryptophan synthase subunit alpha compare
EX31_RS14180 -3.7 -21.6 argininosuccinate lyase compare
EX31_RS23320 -3.7 -6.2 alpha-D-glucose phosphate-specific phosphoglucomutase compare
EX31_RS18255 -3.7 -4.3 3-phosphoserine/phosphohydroxythreonine transaminase compare
EX31_RS13160 -3.6 -16.0 amino-acid N-acetyltransferase compare
EX31_RS12825 -3.6 -11.3 ornithine carbamoyltransferase compare
EX31_RS09965 -3.6 -10.8 anthranilate phosphoribosyltransferase compare
EX31_RS14215 -3.6 -21.2 cystathionine gamma-synthase compare
EX31_RS14310 -3.6 -4.9 6-phosphofructokinase compare
EX31_RS22620 -3.5 -9.3 5-(carboxyamino)imidazole ribonucleotide synthase compare
EX31_RS11735 -3.5 -15.1 homoserine O-succinyltransferase compare
EX31_RS14190 -3.5 -15.2 N-acetyl-gamma-glutamyl-phosphate reductase compare
EX31_RS09955 -3.5 -12.5 anthranilate synthase component 1 compare
EX31_RS03695 -3.5 -5.5 3-isopropylmalate dehydratase small subunit compare
EX31_RS23500 -3.4 -6.1 peptidoglycan-associated lipoprotein Pal compare
EX31_RS11465 -3.4 -11.3 imidazole glycerol phosphate synthase subunit HisF compare
EX31_RS21020 -3.4 -3.3 D-sedoheptulose 7-phosphate isomerase compare
EX31_RS20975 -3.4 -12.0 glutamate-5-semialdehyde dehydrogenase compare
EX31_RS14200 -3.3 -19.9 phosphoenolpyruvate carboxylase compare
EX31_RS09970 -3.3 -11.8 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
EX31_RS03830 -3.3 -19.1 carbamoyl-phosphate synthase large subunit compare
EX31_RS09975 -3.3 -10.9 tryptophan synthase subunit beta compare
EX31_RS22695 -3.3 -10.3 phosphoribosylformylglycinamidine cyclo-ligase compare
EX31_RS14500 -3.3 -12.2 orotate phosphoribosyltransferase compare
EX31_RS18095 -3.2 -7.7 quinone-dependent dihydroorotate dehydrogenase compare
EX31_RS13275 -3.2 -14.7 diaminopimelate decarboxylase compare
EX31_RS22625 -3.2 -4.4 5-(carboxyamino)imidazole ribonucleotide mutase compare
EX31_RS22750 -3.2 -6.0 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
EX31_RS23415 -3.2 -11.7 citrate synthase compare
EX31_RS23480 -3.1 -5.2 Tol-Pal system protein TolQ compare
EX31_RS04645 -3.1 -1.9 DUF2559 family protein compare
EX31_RS11455 -3.1 -5.1 imidazole glycerol phosphate synthase subunit HisH compare
EX31_RS23485 -3.1 -3.0 colicin uptake protein TolR compare
EX31_RS03940 -3.1 -12.2 homoserine kinase compare
EX31_RS05785 -3.1 -5.2 superoxide dismutase [Mn] compare
EX31_RS14335 -3.0 -4.1 serine O-acetyltransferase compare
EX31_RS03035 -3.0 -13.1 LysE family transporter compare
EX31_RS14340 -3.0 -2.0 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
EX31_RS23495 -2.9 -8.6 Tol-Pal system protein TolB compare
EX31_RS11460 -2.9 -4.8 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
EX31_RS03790 -2.9 -3.9 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
EX31_RS11450 -2.8 -8.7 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
EX31_RS07590 -2.8 -4.3 bifunctional chorismate mutase/prephenate dehydrogenase compare
EX31_RS24385 -2.8 -4.7 dihydroorotase compare
EX31_RS09855 -2.8 -4.8 orotidine-5'-phosphate decarboxylase compare
EX31_RS08140 -2.7 -3.7 bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE compare
EX31_RS25910 -2.7 -2.2 hypothetical protein compare
EX31_RS07955 -2.7 -15.0 GTP diphosphokinase compare
EX31_RS11445 -2.7 -11.6 histidinol-phosphate transaminase compare
EX31_RS20450 -2.7 -8.7 IMP dehydrogenase compare
EX31_RS14405 -2.6 -3.1 lipopolysaccharide heptosyltransferase RfaC compare
EX31_RS03945 -2.6 -19.7 bifunctional aspartate kinase/homoserine dehydrogenase I compare
EX31_RS11440 -2.6 -10.1 histidinol dehydrogenase compare
EX31_RS23490 -2.5 -3.0 cell envelope integrity protein TolA compare
EX31_RS08720 -2.5 -15.5 3'(2'),5'-bisphosphate nucleotidase CysQ compare
EX31_RS05825 -2.5 -1.7 mannitol-1-phosphate 5-dehydrogenase compare
EX31_RS03030 -2.5 -12.6 helix-turn-helix transcriptional regulator compare
EX31_RS07585 -2.5 -9.0 bifunctional chorismate mutase/prephenate dehydratase compare
EX31_RS03680 -2.5 -11.6 2-isopropylmalate synthase compare
EX31_RS07895 -2.4 -12.2 phosphoadenylyl-sulfate reductase compare
EX31_RS12785 -2.4 -12.0 aspartate carbamoyltransferase compare
EX31_RS18530 -2.4 -14.3 leucine-responsive transcriptional regulator Lrp compare
EX31_RS07870 -2.4 -10.0 adenylyl-sulfate kinase compare
EX31_RS03775 -2.4 -4.7 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
EX31_RS15870 -2.2 -1.5 glutamate--ammonia ligase compare
EX31_RS04390 -2.2 -3.0 DNA polymerase III subunit chi compare
EX31_RS13045 -2.2 -11.8 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
EX31_RS15095 -2.1 -3.8 O-antigen assembly polymerase compare
EX31_RS22430 -2.1 -1.9 hemolysin expression modulator Hha compare
EX31_RS11540 -2.1 -4.6 dCTP deaminase compare
EX31_RS15085 -2.0 -5.6 lipid III flippase WzxE compare
EX31_RS04105 -2.0 -2.3 helix-turn-helix domain-containing protein compare
EX31_RS14710 -2.0 -17.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase compare
EX31_RS07830 -1.9 -7.7 murein hydrolase activator NlpD compare
EX31_RS11675 -1.9 -2.5 Holliday junction branch migration protein RuvA compare
EX31_RS18525 -1.9 -3.4 DNA translocase FtsK compare
EX31_RS14400 -1.9 -5.7 ADP-heptose--LPS heptosyltransferase RfaF compare
EX31_RS08150 -1.9 -14.0 inorganic triphosphatase compare
EX31_RS20495 -1.9 -6.8 outer membrane protein assembly factor BamB compare
EX31_RS09890 -1.8 -11.2 HTH-type transcriptional regulator CysB compare
EX31_RS02625 -1.8 -2.7 hypothetical protein compare
EX31_RS02520 -1.8 -1.2 sigma-54-dependent Fis family transcriptional regulator compare
EX31_RS04630 -1.7 -13.7 aspartate aminotransferase family protein compare
EX31_RS11500 -1.7 -2.4 glycosyltransferase family 2 protein compare
EX31_RS21850 -1.7 -1.9 pyridoxine 5'-phosphate synthase compare
EX31_RS12400 -1.7 -1.2 RNA polymerase factor sigma-54 compare
EX31_RS10115 -1.7 -10.2 formyltetrahydrofolate deformylase compare
EX31_RS03250 -1.7 -9.2 RNA polymerase-binding protein DksA compare
EX31_RS10535 -1.7 -2.8 GtrA family protein compare
EX31_RS07785 -1.7 -1.8 carbon storage regulator CsrA compare
EX31_RS09655 -1.6 -2.2 membrane protein compare
EX31_RS14325 -1.6 -11.6 envelope stress sensor histidine kinase CpxA compare
EX31_RS22245 -1.6 -1.9 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
EX31_RS15010 -1.6 -9.3 threonine ammonia-lyase, biosynthetic compare
EX31_RS04710 -1.5 -4.7 adenine-specific DNA-methyltransferase compare
EX31_RS09565 -1.5 -1.8 flagellar hook-length control protein FliK compare
EX31_RS03400 -1.5 -4.7 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
EX31_RS04725 -1.5 -5.0 shikimate kinase AroK compare
EX31_RS07905 -1.5 -12.3 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
EX31_RS19610 -1.5 -7.3 4-phosphoerythronate dehydrogenase PdxB compare
EX31_RS06055 -1.5 -3.3 phosphate ABC transporter ATP-binding protein PstB compare
EX31_RS07900 -1.4 -11.1 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
EX31_RS09585 -1.4 -2.9 flagellar biosynthetic protein FliO compare
EX31_RS15875 -1.4 -9.0 nitrogen regulation protein NR(II) compare
EX31_RS25290 -1.4 -1.8 hypothetical protein compare
EX31_RS22250 -1.4 -2.5 ATP-dependent protease ATP-binding subunit ClpX compare
EX31_RS12875 -1.4 -2.4 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
EX31_RS14205 -1.4 -9.4 methylenetetrahydrofolate reductase compare
EX31_RS23785 -1.4 -3.1 DUF262 domain-containing protein compare
EX31_RS05040 -1.4 -3.3 helix-turn-helix domain-containing protein compare
EX31_RS10035 -1.4 -2.0 cardiolipin synthase compare
EX31_RS25415 -1.3 -1.4 helix-turn-helix domain-containing protein compare
EX31_RS10100 -1.3 -2.4 two-component system response regulator RssB compare
EX31_RS03040 -1.3 -5.8 hypothetical protein compare
EX31_RS14445 -1.3 -5.3 glycosyltransferase family 2 protein compare
EX31_RS07875 -1.3 -10.3 sulfate adenylyltransferase subunit CysN compare
EX31_RS20175 -1.3 -6.0 cysteine synthase A compare
EX31_RS07880 -1.2 -10.5 sulfate adenylyltransferase subunit CysD compare
EX31_RS14435 -1.2 -6.1 glycosyltransferase family 4 protein compare
EX31_RS23440 -1.2 -2.0 2-oxoglutarate dehydrogenase E1 component compare
EX31_RS09580 -1.2 -1.7 flagellar motor switch protein FliN compare
EX31_RS10020 -1.2 -1.7 YciI family protein compare
EX31_RS14195 -1.2 -9.7 acetylornithine deacetylase compare
EX31_RS15155 -1.2 -2.3 diaminopimelate epimerase compare
EX31_RS03570 -1.2 -2.3 DUF721 domain-containing protein compare
EX31_RS14410 -1.2 -9.9 glycosyltransferase family 9 protein compare
EX31_RS01530 -1.1 -0.9 hypothetical protein compare
EX31_RS04635 -1.1 -5.3 aminodeoxychorismate synthase component II compare
EX31_RS20185 -1.1 -4.0 phosphoenolpyruvate-protein phosphotransferase PtsI compare
EX31_RS15000 -1.1 -7.7 branched-chain amino acid transaminase compare
EX31_RS01885 -1.1 -2.3 type IV secretion protein Rhs compare
EX31_RS10590 -1.1 -1.6 cell division topological specificity factor MinE compare
EX31_RS02530 -1.1 -1.0 ABC transporter ATP-binding protein compare
EX31_RS11490 -1.0 -3.5 glycosyltransferase compare
EX31_RS19655 -1.0 -3.8 beta-ketoacyl-ACP synthase I compare
EX31_RS05270 -1.0 -4.8 carbonic anhydrase compare
EX31_RS14730 -1.0 -1.0 DUF2756 domain-containing protein compare
EX31_RS25375 -1.0 -1.9 ilv operon leader peptide compare
EX31_RS20190 -1.0 -1.0 PTS glucose transporter subunit IIA compare
EX31_RS10090 -1.0 -1.4 NAD-dependent epimerase compare
EX31_RS02270 -1.0 -2.7 transcriptional regulator ChbR compare
EX31_RS13480 -1.0 -4.0 site-specific tyrosine recombinase XerD compare
EX31_RS09550 -1.0 -2.0 flagellar assembly protein FliH compare
EX31_RS07470 -1.0 -1.2 hypothetical protein compare
EX31_RS06060 -0.9 -3.5 phosphate ABC transporter permease PstA compare
EX31_RS07035 -0.9 -3.5 guanine deaminase compare
EX31_RS01695 -0.9 -1.3 RusA family crossover junction endodeoxyribonuclease compare
EX31_RS24255 -0.9 -7.6 glucans biosynthesis glucosyltransferase MdoH compare
EX31_RS20405 -0.9 -4.0 class I SAM-dependent methyltransferase compare
EX31_RS15910 -0.9 -5.8 thiol:disulfide interchange protein DsbA compare
EX31_RS10825 -0.9 -1.0 hypothetical protein compare
EX31_RS18040 -0.9 -6.5 porin OmpA compare
EX31_RS11480 -0.9 -3.8 ABC transporter permease compare
EX31_RS13335 -0.9 -0.7 transcriptional regulator compare
EX31_RS09240 -0.9 -3.1 D-aminopeptidase compare
EX31_RS10245 -0.9 -2.1 D-alanyl-D-alanine dipeptidase compare
EX31_RS13815 -0.9 -1.1 ribonuclease T compare
EX31_RS00170 -0.9 -1.5 DUF1471 domain-containing protein compare
EX31_RS20735 -0.9 -2.5 exodeoxyribonuclease V subunit beta compare
EX31_RS06065 -0.9 -4.5 phosphate ABC transporter permease PstC compare
EX31_RS07135 -0.8 -1.3 hypothetical protein compare
EX31_RS24725 -0.8 -4.4 aminodeoxychorismate synthase component 1 compare
EX31_RS08825 -0.8 -6.5 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
EX31_RS00010 -0.8 -0.9 type II toxin-antitoxin system HipA family toxin compare
EX31_RS06070 -0.8 -4.8 phosphate ABC transporter substrate-binding protein PstS compare
EX31_RS22270 -0.8 -1.2 competence protein ComEA compare
EX31_RS25060 -0.8 -2.0 DUF2767 family protein compare
EX31_RS00930 -0.8 -3.4 glycosyltransferase family 9 protein compare
EX31_RS14095 -0.8 -2.5 yfeABCD regulator yfeE compare
EX31_RS09670 -0.8 -1.8 bleomycin resistance protein compare
EX31_RS24855 -0.8 -2.4 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF compare
EX31_RS18440 -0.8 -2.4 TraR/DksA family transcriptional regulator compare
EX31_RS01920 -0.8 -1.7 hypothetical protein compare
EX31_RS06150 -0.8 -6.8 transcriptional regulator AsnC compare
EX31_RS14415 -0.8 -4.6 sugar glycosyltransferase compare
EX31_RS00540 -0.8 -2.6 pentapeptide MXKDX repeat protein compare


Specific Phenotypes

None in this experiment

For Rahnella sp. WP5 in nf_with10percent_fulln experiments