Experiment set4S122 for Rahnella sp. WP5

Compare to:

NF_with10percent_fullN

200 most important genes:

  gene name fitness t score description  
EX31_RS03695 -5.3 -5.8 3-isopropylmalate dehydratase small subunit compare
EX31_RS11470 -5.2 -6.1 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
EX31_RS21470 -4.5 -15.0 phosphoglycerate dehydrogenase compare
EX31_RS16855 -4.5 -18.2 phosphoribosylamine--glycine ligase compare
EX31_RS12510 -4.5 -18.0 FAD-dependent oxidoreductase compare
EX31_RS03685 -4.4 -18.9 3-isopropylmalate dehydrogenase compare
EX31_RS23500 -4.4 -5.2 peptidoglycan-associated lipoprotein Pal compare
EX31_RS15880 -4.4 -12.3 nitrogen regulation protein NR(I) compare
EX31_RS16860 -4.4 -24.3 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
EX31_RS23245 -4.4 -27.7 asparagine synthase B compare
EX31_RS12515 -4.4 -31.5 glutamate synthase large subunit compare
EX31_RS14190 -4.3 -15.4 N-acetyl-gamma-glutamyl-phosphate reductase compare
EX31_RS14405 -4.3 -3.0 lipopolysaccharide heptosyltransferase RfaC compare
EX31_RS21895 -4.3 -22.4 phosphoribosylformylglycinamidine synthase compare
EX31_RS04035 -4.3 -19.4 phosphoserine phosphatase compare
EX31_RS12825 -4.2 -12.2 ornithine carbamoyltransferase compare
EX31_RS13445 -4.2 -21.3 argininosuccinate synthase compare
EX31_RS09975 -4.2 -11.1 tryptophan synthase subunit beta compare
EX31_RS25370 -4.2 -18.5 HTH-type transcriptional regulator MetR compare
EX31_RS02690 -4.1 -8.2 pyrroline-5-carboxylate reductase compare
EX31_RS13160 -4.0 -16.4 amino-acid N-acetyltransferase compare
EX31_RS15020 -4.0 -22.4 ketol-acid reductoisomerase compare
EX31_RS03690 -4.0 -17.5 3-isopropylmalate dehydratase large subunit compare
EX31_RS15005 -4.0 -19.9 dihydroxy-acid dehydratase compare
EX31_RS22625 -4.0 -4.4 5-(carboxyamino)imidazole ribonucleotide mutase compare
EX31_RS14185 -3.9 -10.6 acetylglutamate kinase compare
EX31_RS22750 -3.9 -5.9 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
EX31_RS11465 -3.9 -9.8 imidazole glycerol phosphate synthase subunit HisF compare
EX31_RS19570 -3.9 -16.6 amidophosphoribosyltransferase compare
EX31_RS07590 -3.9 -3.8 bifunctional chorismate mutase/prephenate dehydrogenase compare
EX31_RS14180 -3.8 -20.3 argininosuccinate lyase compare
EX31_RS22695 -3.8 -11.1 phosphoribosylformylglycinamidine cyclo-ligase compare
EX31_RS03940 -3.8 -15.4 homoserine kinase compare
EX31_RS14200 -3.8 -19.8 phosphoenolpyruvate carboxylase compare
EX31_RS20980 -3.8 -8.7 glutamate 5-kinase compare
EX31_RS23320 -3.7 -6.2 alpha-D-glucose phosphate-specific phosphoglucomutase compare
EX31_RS09955 -3.7 -12.6 anthranilate synthase component 1 compare
EX31_RS14335 -3.7 -3.6 serine O-acetyltransferase compare
EX31_RS18255 -3.7 -4.4 3-phosphoserine/phosphohydroxythreonine transaminase compare
EX31_RS20975 -3.7 -10.1 glutamate-5-semialdehyde dehydrogenase compare
EX31_RS11735 -3.7 -14.3 homoserine O-succinyltransferase compare
EX31_RS23415 -3.7 -13.2 citrate synthase compare
EX31_RS09980 -3.7 -9.0 tryptophan synthase subunit alpha compare
EX31_RS11450 -3.7 -11.0 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
EX31_RS09855 -3.7 -5.0 orotidine-5'-phosphate decarboxylase compare
EX31_RS14215 -3.6 -22.3 cystathionine gamma-synthase compare
EX31_RS09960 -3.6 -8.8 glutamine amidotransferase compare
EX31_RS22620 -3.6 -8.6 5-(carboxyamino)imidazole ribonucleotide synthase compare
EX31_RS11525 -3.6 -4.2 UTP--glucose-1-phosphate uridylyltransferase GalU compare
EX31_RS03935 -3.6 -15.5 threonine synthase compare
EX31_RS11440 -3.5 -9.4 histidinol dehydrogenase compare
EX31_RS03835 -3.4 -12.3 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
EX31_RS23485 -3.3 -3.2 colicin uptake protein TolR compare
EX31_RS09970 -3.3 -11.1 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
EX31_RS23490 -3.3 -2.3 cell envelope integrity protein TolA compare
EX31_RS13275 -3.3 -17.3 diaminopimelate decarboxylase compare
EX31_RS23495 -3.3 -8.9 Tol-Pal system protein TolB compare
EX31_RS03830 -3.2 -18.5 carbamoyl-phosphate synthase large subunit compare
EX31_RS14500 -3.2 -11.7 orotate phosphoribosyltransferase compare
EX31_RS11445 -3.1 -12.1 histidinol-phosphate transaminase compare
EX31_RS05785 -3.1 -6.3 superoxide dismutase [Mn] compare
EX31_RS11460 -2.9 -4.8 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
EX31_RS09965 -2.8 -9.0 anthranilate phosphoribosyltransferase compare
EX31_RS03945 -2.8 -20.7 bifunctional aspartate kinase/homoserine dehydrogenase I compare
EX31_RS14310 -2.8 -5.3 6-phosphofructokinase compare
EX31_RS08140 -2.8 -3.7 bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE compare
EX31_RS03035 -2.7 -11.8 LysE family transporter compare
EX31_RS04105 -2.7 -3.7 helix-turn-helix domain-containing protein compare
EX31_RS23480 -2.7 -5.6 Tol-Pal system protein TolQ compare
EX31_RS08720 -2.7 -16.7 3'(2'),5'-bisphosphate nucleotidase CysQ compare
EX31_RS07955 -2.7 -15.0 GTP diphosphokinase compare
EX31_RS07585 -2.7 -8.7 bifunctional chorismate mutase/prephenate dehydratase compare
EX31_RS03680 -2.7 -11.5 2-isopropylmalate synthase compare
EX31_RS07830 -2.7 -9.6 murein hydrolase activator NlpD compare
EX31_RS04390 -2.6 -3.6 DNA polymerase III subunit chi compare
EX31_RS07895 -2.6 -14.0 phosphoadenylyl-sulfate reductase compare
EX31_RS05825 -2.6 -1.8 mannitol-1-phosphate 5-dehydrogenase compare
EX31_RS11455 -2.6 -5.2 imidazole glycerol phosphate synthase subunit HisH compare
EX31_RS18530 -2.6 -14.7 leucine-responsive transcriptional regulator Lrp compare
EX31_RS14400 -2.5 -6.6 ADP-heptose--LPS heptosyltransferase RfaF compare
EX31_RS03030 -2.4 -12.3 helix-turn-helix transcriptional regulator compare
EX31_RS12785 -2.4 -12.3 aspartate carbamoyltransferase compare
EX31_RS24385 -2.3 -5.2 dihydroorotase compare
EX31_RS15870 -2.3 -1.6 glutamate--ammonia ligase compare
EX31_RS18095 -2.3 -6.9 quinone-dependent dihydroorotate dehydrogenase compare
EX31_RS14730 -2.2 -1.6 DUF2756 domain-containing protein compare
EX31_RS03775 -2.2 -5.2 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
EX31_RS20450 -2.2 -8.2 IMP dehydrogenase compare
EX31_RS08150 -2.2 -14.0 inorganic triphosphatase compare
EX31_RS15085 -2.2 -6.7 lipid III flippase WzxE compare
EX31_RS03790 -2.1 -2.8 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
EX31_RS20190 -2.1 -2.3 PTS glucose transporter subunit IIA compare
EX31_RS22245 -2.0 -1.4 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
EX31_RS21020 -2.0 -2.6 D-sedoheptulose 7-phosphate isomerase compare
EX31_RS20495 -1.9 -6.9 outer membrane protein assembly factor BamB compare
EX31_RS20735 -1.9 -4.2 exodeoxyribonuclease V subunit beta compare
EX31_RS07870 -1.9 -10.8 adenylyl-sulfate kinase compare
EX31_RS04630 -1.9 -13.9 aspartate aminotransferase family protein compare
EX31_RS14710 -1.9 -16.5 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase compare
EX31_RS11540 -1.8 -3.1 dCTP deaminase compare
EX31_RS02530 -1.8 -1.2 ABC transporter ATP-binding protein compare
EX31_RS13045 -1.8 -10.6 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
EX31_RS06055 -1.8 -4.1 phosphate ABC transporter ATP-binding protein PstB compare
EX31_RS11500 -1.8 -2.7 glycosyltransferase family 2 protein compare
EX31_RS23785 -1.8 -4.1 DUF262 domain-containing protein compare
EX31_RS18525 -1.8 -4.0 DNA translocase FtsK compare
EX31_RS09890 -1.7 -9.7 HTH-type transcriptional regulator CysB compare
EX31_RS14445 -1.7 -6.7 glycosyltransferase family 2 protein compare
EX31_RS03250 -1.7 -7.9 RNA polymerase-binding protein DksA compare
EX31_RS25295 -1.7 -2.2 GhoT/OrtT family toxin compare
EX31_RS20180 -1.7 -2.6 phosphocarrier protein Hpr compare
EX31_RS12875 -1.6 -2.9 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
EX31_RS15010 -1.6 -9.6 threonine ammonia-lyase, biosynthetic compare
EX31_RS14325 -1.6 -12.5 envelope stress sensor histidine kinase CpxA compare
EX31_RS07905 -1.6 -12.7 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
EX31_RS07900 -1.6 -11.4 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
EX31_RS22250 -1.5 -2.3 ATP-dependent protease ATP-binding subunit ClpX compare
EX31_RS14435 -1.5 -7.2 glycosyltransferase family 4 protein compare
EX31_RS05040 -1.5 -3.6 helix-turn-helix domain-containing protein compare
EX31_RS15875 -1.5 -8.3 nitrogen regulation protein NR(II) compare
EX31_RS20175 -1.5 -8.1 cysteine synthase A compare
EX31_RS10100 -1.4 -2.3 two-component system response regulator RssB compare
EX31_RS10115 -1.4 -8.1 formyltetrahydrofolate deformylase compare
EX31_RS13480 -1.4 -5.6 site-specific tyrosine recombinase XerD compare
EX31_RS09580 -1.4 -1.5 flagellar motor switch protein FliN compare
EX31_RS19655 -1.3 -5.0 beta-ketoacyl-ACP synthase I compare
EX31_RS04725 -1.3 -3.8 shikimate kinase AroK compare
EX31_RS03645 -1.3 -3.2 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
EX31_RS03400 -1.3 -4.7 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
EX31_RS17295 -1.3 -3.0 hypothetical protein compare
EX31_RS03710 -1.3 -1.8 glucose uptake inhibitor SgrT compare
EX31_RS14410 -1.3 -11.1 glycosyltransferase family 9 protein compare
EX31_RS14205 -1.3 -9.0 methylenetetrahydrofolate reductase compare
EX31_RS13815 -1.3 -1.5 ribonuclease T compare
EX31_RS12400 -1.3 -1.7 RNA polymerase factor sigma-54 compare
EX31_RS04645 -1.3 -1.3 DUF2559 family protein compare
EX31_RS03040 -1.3 -5.7 hypothetical protein compare
EX31_RS15000 -1.3 -8.7 branched-chain amino acid transaminase compare
EX31_RS15095 -1.3 -2.3 O-antigen assembly polymerase compare
EX31_RS07880 -1.2 -10.3 sulfate adenylyltransferase subunit CysD compare
EX31_RS07785 -1.2 -1.4 carbon storage regulator CsrA compare
EX31_RS11490 -1.2 -4.4 glycosyltransferase compare
EX31_RS14195 -1.2 -10.0 acetylornithine deacetylase compare
EX31_RS07875 -1.2 -10.1 sulfate adenylyltransferase subunit CysN compare
EX31_RS04925 -1.2 -3.4 Fe-S biogenesis protein NfuA compare
EX31_RS25725 -1.1 -1.1 hypothetical protein compare
EX31_RS04710 -1.1 -4.1 adenine-specific DNA-methyltransferase compare
EX31_RS02385 -1.1 -1.2 hypothetical protein compare
EX31_RS01715 -1.1 -2.9 DNA replication protein compare
EX31_RS14340 -1.1 -1.5 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
EX31_RS01885 -1.1 -2.3 type IV secretion protein Rhs compare
EX31_RS15165 -1.1 -5.7 tyrosine recombinase XerC compare
EX31_RS22810 -1.1 -2.1 helix-turn-helix domain-containing protein compare
EX31_RS22430 -1.0 -1.4 hemolysin expression modulator Hha compare
EX31_RS24220 -1.0 -1.3 hypothetical protein compare
EX31_RS18040 -1.0 -7.0 porin OmpA compare
EX31_RS19610 -1.0 -4.4 4-phosphoerythronate dehydrogenase PdxB compare
EX31_RS23990 -1.0 -1.0 SDR family NAD(P)-dependent oxidoreductase compare
EX31_RS01970 -1.0 -1.3 hypothetical protein compare
EX31_RS02515 -1.0 -1.0 PAS domain-containing protein compare
EX31_RS02145 -1.0 -2.2 methionine synthase compare
EX31_RS15910 -1.0 -5.4 thiol:disulfide interchange protein DsbA compare
EX31_RS23440 -1.0 -1.9 2-oxoglutarate dehydrogenase E1 component compare
EX31_RS13745 -1.0 -3.0 pyridoxal kinase PdxY compare
EX31_RS14415 -1.0 -5.6 sugar glycosyltransferase compare
EX31_RS16615 -1.0 -2.4 membrane protein compare
EX31_RS11485 -1.0 -3.7 ABC transporter ATP-binding protein compare
EX31_RS24255 -0.9 -7.5 glucans biosynthesis glucosyltransferase MdoH compare
EX31_RS11335 -0.9 -2.0 flagellar protein FlhE compare
EX31_RS02790 -0.9 -2.8 low molecular weight phosphotyrosine protein phosphatase compare
EX31_RS18325 -0.9 -2.1 baseplate assembly protein compare
EX31_RS06150 -0.9 -7.7 transcriptional regulator AsnC compare
EX31_RS06070 -0.9 -5.5 phosphate ABC transporter substrate-binding protein PstS compare
EX31_RS08825 -0.9 -6.7 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
EX31_RS24250 -0.9 -4.8 glucan biosynthesis protein G compare
EX31_RS24855 -0.9 -3.0 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF compare
EX31_RS18535 -0.9 -3.5 thioredoxin-disulfide reductase compare
EX31_RS15655 -0.9 -1.3 hypothetical protein compare
EX31_RS06065 -0.9 -5.3 phosphate ABC transporter permease PstC compare
EX31_RS04325 -0.9 -0.8 hypothetical protein compare
EX31_RS05270 -0.8 -3.7 carbonic anhydrase compare
EX31_RS05145 -0.8 -4.9 inorganic phosphate transporter PitA compare
EX31_RS20415 -0.8 -4.0 phospholipid carrier-dependent glycosyltransferase compare
EX31_RS04635 -0.8 -4.9 aminodeoxychorismate synthase component II compare
EX31_RS13335 -0.8 -1.6 transcriptional regulator compare
EX31_RS15155 -0.8 -1.9 diaminopimelate epimerase compare
EX31_RS24880 -0.8 -6.9 carboxy terminal-processing peptidase compare
EX31_RS23630 -0.8 -2.8 transcriptional regulator compare
EX31_RS14840 -0.8 -5.3 DUF1145 family protein compare
EX31_RS06550 -0.8 -2.3 two-component system response regulator NarL compare
EX31_RS06060 -0.8 -2.8 phosphate ABC transporter permease PstA compare
EX31_RS01695 -0.8 -1.1 RusA family crossover junction endodeoxyribonuclease compare
EX31_RS24645 -0.8 -2.1 DUF2591 domain-containing protein compare
EX31_RS11480 -0.8 -3.7 ABC transporter permease compare
EX31_RS07415 -0.8 -0.8 bifunctional diguanylate cyclase/phosphodiesterase compare
EX31_RS14550 -0.8 -1.5 Trk system potassium transporter TrkH compare
EX31_RS00380 -0.8 -1.9 ABC transporter ATP-binding protein compare
EX31_RS11675 -0.8 -1.8 Holliday junction branch migration protein RuvA compare
EX31_RS21805 -0.8 -4.0 anti-sigma-E factor RseA compare
EX31_RS22265 -0.7 -4.9 peptidylprolyl isomerase compare


Specific Phenotypes

None in this experiment

For Rahnella sp. WP5 in nf_with10percent_fulln experiments