Experiment set4S121 for Rahnella sp. WP5

Compare to:

NF_with10percent_fullN

200 most important genes:

  gene name fitness t score description  
EX31_RS03695 -7.0 -8.9 3-isopropylmalate dehydratase small subunit compare
EX31_RS20975 -4.9 -12.7 glutamate-5-semialdehyde dehydrogenase compare
EX31_RS02690 -4.6 -10.7 pyrroline-5-carboxylate reductase compare
EX31_RS04035 -4.6 -18.9 phosphoserine phosphatase compare
EX31_RS12825 -4.5 -12.6 ornithine carbamoyltransferase compare
EX31_RS21470 -4.5 -15.5 phosphoglycerate dehydrogenase compare
EX31_RS07590 -4.5 -3.1 bifunctional chorismate mutase/prephenate dehydrogenase compare
EX31_RS14185 -4.5 -10.8 acetylglutamate kinase compare
EX31_RS14405 -4.4 -3.0 lipopolysaccharide heptosyltransferase RfaC compare
EX31_RS21895 -4.4 -23.7 phosphoribosylformylglycinamidine synthase compare
EX31_RS03690 -4.4 -18.5 3-isopropylmalate dehydratase large subunit compare
EX31_RS23480 -4.4 -5.2 Tol-Pal system protein TolQ compare
EX31_RS12510 -4.3 -19.7 FAD-dependent oxidoreductase compare
EX31_RS23245 -4.3 -26.8 asparagine synthase B compare
EX31_RS22620 -4.2 -9.6 5-(carboxyamino)imidazole ribonucleotide synthase compare
EX31_RS15880 -4.2 -13.0 nitrogen regulation protein NR(I) compare
EX31_RS25370 -4.2 -19.0 HTH-type transcriptional regulator MetR compare
EX31_RS03790 -4.2 -4.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
EX31_RS19570 -4.2 -17.7 amidophosphoribosyltransferase compare
EX31_RS03685 -4.2 -19.2 3-isopropylmalate dehydrogenase compare
EX31_RS11735 -4.1 -14.7 homoserine O-succinyltransferase compare
EX31_RS22695 -4.1 -11.0 phosphoribosylformylglycinamidine cyclo-ligase compare
EX31_RS24385 -4.1 -4.0 dihydroorotase compare
EX31_RS03935 -4.1 -17.5 threonine synthase compare
EX31_RS20980 -4.1 -11.6 glutamate 5-kinase compare
EX31_RS16860 -4.1 -24.0 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
EX31_RS03940 -4.1 -14.5 homoserine kinase compare
EX31_RS12515 -4.1 -30.1 glutamate synthase large subunit compare
EX31_RS16855 -4.0 -15.9 phosphoribosylamine--glycine ligase compare
EX31_RS14180 -4.0 -19.3 argininosuccinate lyase compare
EX31_RS23485 -4.0 -2.7 colicin uptake protein TolR compare
EX31_RS11465 -4.0 -12.0 imidazole glycerol phosphate synthase subunit HisF compare
EX31_RS13445 -4.0 -22.3 argininosuccinate synthase compare
EX31_RS23495 -3.9 -8.0 Tol-Pal system protein TolB compare
EX31_RS09980 -3.8 -10.4 tryptophan synthase subunit alpha compare
EX31_RS15020 -3.8 -19.7 ketol-acid reductoisomerase compare
EX31_RS22750 -3.8 -6.4 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
EX31_RS13160 -3.8 -14.8 amino-acid N-acetyltransferase compare
EX31_RS09580 -3.8 -2.5 flagellar motor switch protein FliN compare
EX31_RS14190 -3.8 -14.0 N-acetyl-gamma-glutamyl-phosphate reductase compare
EX31_RS15005 -3.7 -19.8 dihydroxy-acid dehydratase compare
EX31_RS09965 -3.7 -10.1 anthranilate phosphoribosyltransferase compare
EX31_RS09970 -3.6 -11.2 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
EX31_RS14215 -3.6 -22.6 cystathionine gamma-synthase compare
EX31_RS09955 -3.5 -11.0 anthranilate synthase component 1 compare
EX31_RS09960 -3.5 -9.4 glutamine amidotransferase compare
EX31_RS11455 -3.4 -6.9 imidazole glycerol phosphate synthase subunit HisH compare
EX31_RS03830 -3.4 -20.1 carbamoyl-phosphate synthase large subunit compare
EX31_RS23415 -3.4 -11.8 citrate synthase compare
EX31_RS13275 -3.4 -14.3 diaminopimelate decarboxylase compare
EX31_RS09975 -3.4 -10.3 tryptophan synthase subunit beta compare
EX31_RS11440 -3.4 -9.5 histidinol dehydrogenase compare
EX31_RS05785 -3.3 -6.3 superoxide dismutase [Mn] compare
EX31_RS23320 -3.3 -6.7 alpha-D-glucose phosphate-specific phosphoglucomutase compare
EX31_RS03835 -3.3 -11.2 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
EX31_RS14200 -3.1 -17.7 phosphoenolpyruvate carboxylase compare
EX31_RS11445 -3.1 -11.2 histidinol-phosphate transaminase compare
EX31_RS23500 -3.1 -5.4 peptidoglycan-associated lipoprotein Pal compare
EX31_RS11470 -3.1 -4.8 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
EX31_RS11450 -3.1 -9.3 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
EX31_RS14310 -3.0 -5.8 6-phosphofructokinase compare
EX31_RS14335 -3.0 -4.6 serine O-acetyltransferase compare
EX31_RS11525 -3.0 -4.9 UTP--glucose-1-phosphate uridylyltransferase GalU compare
EX31_RS23490 -3.0 -2.9 cell envelope integrity protein TolA compare
EX31_RS14500 -2.9 -9.7 orotate phosphoribosyltransferase compare
EX31_RS18095 -2.8 -8.5 quinone-dependent dihydroorotate dehydrogenase compare
EX31_RS18255 -2.8 -5.1 3-phosphoserine/phosphohydroxythreonine transaminase compare
EX31_RS03035 -2.8 -13.8 LysE family transporter compare
EX31_RS08720 -2.7 -16.9 3'(2'),5'-bisphosphate nucleotidase CysQ compare
EX31_RS07585 -2.7 -9.0 bifunctional chorismate mutase/prephenate dehydratase compare
EX31_RS03775 -2.7 -5.4 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
EX31_RS03945 -2.7 -19.4 bifunctional aspartate kinase/homoserine dehydrogenase I compare
EX31_RS22625 -2.7 -2.7 5-(carboxyamino)imidazole ribonucleotide mutase compare
EX31_RS08140 -2.6 -4.3 bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE compare
EX31_RS03030 -2.6 -13.0 helix-turn-helix transcriptional regulator compare
EX31_RS07955 -2.6 -15.8 GTP diphosphokinase compare
EX31_RS12785 -2.5 -12.1 aspartate carbamoyltransferase compare
EX31_RS10035 -2.5 -2.1 cardiolipin synthase compare
EX31_RS14400 -2.5 -5.8 ADP-heptose--LPS heptosyltransferase RfaF compare
EX31_RS03680 -2.5 -11.0 2-isopropylmalate synthase compare
EX31_RS18530 -2.5 -15.6 leucine-responsive transcriptional regulator Lrp compare
EX31_RS11460 -2.4 -3.5 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
EX31_RS15870 -2.4 -1.6 glutamate--ammonia ligase compare
EX31_RS20450 -2.4 -8.9 IMP dehydrogenase compare
EX31_RS22430 -2.3 -2.0 hemolysin expression modulator Hha compare
EX31_RS07895 -2.3 -11.1 phosphoadenylyl-sulfate reductase compare
EX31_RS20495 -2.3 -7.7 outer membrane protein assembly factor BamB compare
EX31_RS15095 -2.2 -5.6 O-antigen assembly polymerase compare
EX31_RS07870 -2.2 -12.5 adenylyl-sulfate kinase compare
EX31_RS25415 -2.1 -1.9 helix-turn-helix domain-containing protein compare
EX31_RS08150 -2.1 -15.0 inorganic triphosphatase compare
EX31_RS07830 -2.1 -8.3 murein hydrolase activator NlpD compare
EX31_RS13045 -2.0 -12.3 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
EX31_RS04105 -2.0 -2.2 helix-turn-helix domain-containing protein compare
EX31_RS02520 -1.9 -1.3 sigma-54-dependent Fis family transcriptional regulator compare
EX31_RS09890 -1.9 -11.1 HTH-type transcriptional regulator CysB compare
EX31_RS10100 -1.9 -2.9 two-component system response regulator RssB compare
EX31_RS02530 -1.9 -1.3 ABC transporter ATP-binding protein compare
EX31_RS11675 -1.9 -2.7 Holliday junction branch migration protein RuvA compare
EX31_RS01885 -1.9 -2.2 type IV secretion protein Rhs compare
EX31_RS14710 -1.9 -16.4 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase compare
EX31_RS21020 -1.9 -2.0 D-sedoheptulose 7-phosphate isomerase compare
EX31_RS10590 -1.9 -2.2 cell division topological specificity factor MinE compare
EX31_RS04725 -1.9 -4.8 shikimate kinase AroK compare
EX31_RS12875 -1.8 -2.7 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
EX31_RS09855 -1.8 -2.6 orotidine-5'-phosphate decarboxylase compare
EX31_RS07900 -1.7 -12.9 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
EX31_RS15085 -1.7 -5.0 lipid III flippase WzxE compare
EX31_RS20735 -1.7 -4.3 exodeoxyribonuclease V subunit beta compare
EX31_RS14340 -1.7 -1.9 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
EX31_RS15010 -1.7 -9.7 threonine ammonia-lyase, biosynthetic compare
EX31_RS25295 -1.7 -3.4 GhoT/OrtT family toxin compare
EX31_RS14445 -1.6 -6.5 glycosyltransferase family 2 protein compare
EX31_RS06680 -1.6 -2.0 cellulose biosynthesis protein BcsF compare
EX31_RS18525 -1.6 -3.6 DNA translocase FtsK compare
EX31_RS20180 -1.6 -3.2 phosphocarrier protein Hpr compare
EX31_RS11490 -1.6 -5.0 glycosyltransferase compare
EX31_RS04630 -1.6 -12.1 aspartate aminotransferase family protein compare
EX31_RS19655 -1.6 -4.7 beta-ketoacyl-ACP synthase I compare
EX31_RS05040 -1.6 -4.6 helix-turn-helix domain-containing protein compare
EX31_RS14325 -1.5 -11.3 envelope stress sensor histidine kinase CpxA compare
EX31_RS24380 -1.5 -2.3 DNA damage-inducible protein I compare
EX31_RS07905 -1.5 -11.5 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
EX31_RS01970 -1.5 -1.3 hypothetical protein compare
EX31_RS22245 -1.5 -2.0 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
EX31_RS12400 -1.5 -1.7 RNA polymerase factor sigma-54 compare
EX31_RS10115 -1.4 -8.7 formyltetrahydrofolate deformylase compare
EX31_RS05825 -1.4 -1.9 mannitol-1-phosphate 5-dehydrogenase compare
EX31_RS03040 -1.4 -6.7 hypothetical protein compare
EX31_RS03250 -1.4 -7.8 RNA polymerase-binding protein DksA compare
EX31_RS15875 -1.4 -7.7 nitrogen regulation protein NR(II) compare
EX31_RS23785 -1.4 -3.7 DUF262 domain-containing protein compare
EX31_RS04710 -1.4 -4.7 adenine-specific DNA-methyltransferase compare
EX31_RS21850 -1.3 -1.5 pyridoxine 5'-phosphate synthase compare
EX31_RS20175 -1.3 -6.4 cysteine synthase A compare
EX31_RS07875 -1.3 -11.0 sulfate adenylyltransferase subunit CysN compare
EX31_RS07135 -1.3 -2.0 hypothetical protein compare
EX31_RS06055 -1.3 -3.4 phosphate ABC transporter ATP-binding protein PstB compare
EX31_RS14435 -1.3 -6.5 glycosyltransferase family 4 protein compare
EX31_RS03400 -1.3 -4.8 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
EX31_RS04390 -1.3 -2.4 DNA polymerase III subunit chi compare
EX31_RS25595 -1.3 -2.2 hypothetical protein compare
EX31_RS19610 -1.3 -5.7 4-phosphoerythronate dehydrogenase PdxB compare
EX31_RS03310 -1.2 -4.0 hypothetical protein compare
EX31_RS06915 -1.2 -1.7 type I glyceraldehyde-3-phosphate dehydrogenase compare
EX31_RS11540 -1.2 -3.5 dCTP deaminase compare
EX31_RS14205 -1.2 -8.4 methylenetetrahydrofolate reductase compare
EX31_RS24725 -1.2 -6.2 aminodeoxychorismate synthase component 1 compare
EX31_RS11480 -1.2 -5.0 ABC transporter permease compare
EX31_RS14195 -1.2 -9.6 acetylornithine deacetylase compare
EX31_RS14410 -1.2 -10.3 glycosyltransferase family 9 protein compare
EX31_RS07880 -1.2 -9.9 sulfate adenylyltransferase subunit CysD compare
EX31_RS24620 -1.1 -2.5 YebW family protein compare
EX31_RS24670 -1.1 -3.9 peptidoglycan editing factor PgeF compare
EX31_RS10020 -1.1 -1.6 YciI family protein compare
EX31_RS24450 -1.1 -3.5 aminodeoxychorismate lyase compare
EX31_RS15000 -1.1 -7.6 branched-chain amino acid transaminase compare
EX31_RS04635 -1.1 -5.3 aminodeoxychorismate synthase component II compare
EX31_RS06065 -1.1 -6.1 phosphate ABC transporter permease PstC compare
EX31_RS22250 -1.0 -2.4 ATP-dependent protease ATP-binding subunit ClpX compare
EX31_RS24250 -1.0 -6.6 glucan biosynthesis protein G compare
EX31_RS24855 -1.0 -3.3 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF compare
EX31_RS06955 -1.0 -2.1 hypothetical protein compare
EX31_RS16980 -1.0 -2.6 ATP-dependent dethiobiotin synthetase BioD compare
EX31_RS02920 -1.0 -1.8 glycosyltransferase compare
EX31_RS26000 -1.0 -2.6 GntR family transcriptional regulator compare
EX31_RS02740 -1.0 -2.1 oxidative damage protection protein compare
EX31_RS10180 -1.0 -1.4 type II 3-dehydroquinate dehydratase compare
EX31_RS18040 -1.0 -7.3 porin OmpA compare
EX31_RS10535 -1.0 -1.8 GtrA family protein compare
EX31_RS07785 -1.0 -1.5 carbon storage regulator CsrA compare
EX31_RS24600 -0.9 -1.4 hypothetical protein compare
EX31_RS15910 -0.9 -6.0 thiol:disulfide interchange protein DsbA compare
EX31_RS24255 -0.9 -7.4 glucans biosynthesis glucosyltransferase MdoH compare
EX31_RS01800 -0.9 -3.7 porin compare
EX31_RS08825 -0.9 -6.8 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
EX31_RS13480 -0.9 -4.2 site-specific tyrosine recombinase XerD compare
EX31_RS06340 -0.9 -1.5 thiol peroxidase compare
EX31_RS16725 -0.9 -2.0 phytanoyl-CoA dioxygenase compare
EX31_RS06070 -0.9 -5.6 phosphate ABC transporter substrate-binding protein PstS compare
EX31_RS07525 -0.9 -2.1 sulfurtransferase compare
EX31_RS22770 -0.9 -3.3 esterase compare
EX31_RS07380 -0.9 -1.7 redox-regulated ATPase YchF compare
EX31_RS12520 -0.9 -6.7 aerobic respiration two-component sensor histidine kinase ArcB compare
EX31_RS23895 -0.9 -3.9 TetR/AcrR family transcriptional regulator compare
EX31_RS07475 -0.9 -1.5 hypothetical protein compare
EX31_RS06150 -0.9 -7.2 transcriptional regulator AsnC compare
EX31_RS02625 -0.9 -1.4 hypothetical protein compare
EX31_RS24220 -0.8 -1.2 hypothetical protein compare
EX31_RS02160 -0.8 -2.3 helix-turn-helix domain-containing protein compare
EX31_RS11500 -0.8 -1.4 glycosyltransferase family 2 protein compare
EX31_RS01840 -0.8 -2.3 PAS domain-containing protein compare
EX31_RS06060 -0.8 -3.3 phosphate ABC transporter permease PstA compare
EX31_RS19220 -0.8 -5.6 DUF3413 domain-containing protein compare
EX31_RS00450 -0.8 -2.1 methionine-R-sulfoxide reductase compare
EX31_RS15655 -0.8 -1.4 hypothetical protein compare
EX31_RS02695 -0.8 -3.6 YggT family protein compare
EX31_RS09350 -0.8 -2.6 ATP-binding cassette domain-containing protein compare
EX31_RS05145 -0.8 -4.1 inorganic phosphate transporter PitA compare
EX31_RS15165 -0.8 -3.3 tyrosine recombinase XerC compare


Specific Phenotypes

None in this experiment

For Rahnella sp. WP5 in nf_with10percent_fulln experiments