Experiment set4S120 for Rahnella sp. WP5

Compare to:

NLN

200 most important genes:

  gene name fitness t score description  
EX31_RS14405 -4.1 -2.8 lipopolysaccharide heptosyltransferase RfaC compare
EX31_RS18255 -3.6 -4.9 3-phosphoserine/phosphohydroxythreonine transaminase compare
EX31_RS07590 -3.4 -4.0 bifunctional chorismate mutase/prephenate dehydrogenase compare
EX31_RS22625 -3.4 -4.2 5-(carboxyamino)imidazole ribonucleotide mutase compare
EX31_RS04035 -3.3 -14.5 phosphoserine phosphatase compare
EX31_RS11470 -3.2 -5.0 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
EX31_RS23245 -3.2 -20.6 asparagine synthase B compare
EX31_RS15880 -3.1 -10.6 nitrogen regulation protein NR(I) compare
EX31_RS03695 -3.0 -4.6 3-isopropylmalate dehydratase small subunit compare
EX31_RS22620 -3.0 -7.6 5-(carboxyamino)imidazole ribonucleotide synthase compare
EX31_RS21470 -3.0 -12.9 phosphoglycerate dehydrogenase compare
EX31_RS21020 -3.0 -3.5 D-sedoheptulose 7-phosphate isomerase compare
EX31_RS12510 -2.9 -14.8 FAD-dependent oxidoreductase compare
EX31_RS14180 -2.9 -17.1 argininosuccinate lyase compare
EX31_RS21895 -2.9 -18.2 phosphoribosylformylglycinamidine synthase compare
EX31_RS16855 -2.9 -12.5 phosphoribosylamine--glycine ligase compare
EX31_RS22695 -2.8 -8.5 phosphoribosylformylglycinamidine cyclo-ligase compare
EX31_RS13445 -2.8 -16.9 argininosuccinate synthase compare
EX31_RS03935 -2.8 -12.2 threonine synthase compare
EX31_RS13160 -2.8 -13.1 amino-acid N-acetyltransferase compare
EX31_RS15005 -2.8 -15.8 dihydroxy-acid dehydratase compare
EX31_RS12515 -2.8 -22.7 glutamate synthase large subunit compare
EX31_RS18095 -2.8 -8.2 quinone-dependent dihydroorotate dehydrogenase compare
EX31_RS04105 -2.7 -3.6 helix-turn-helix domain-containing protein compare
EX31_RS22750 -2.7 -5.8 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
EX31_RS09960 -2.7 -6.9 glutamine amidotransferase compare
EX31_RS05785 -2.7 -5.1 superoxide dismutase [Mn] compare
EX31_RS03685 -2.7 -14.6 3-isopropylmalate dehydrogenase compare
EX31_RS19570 -2.7 -12.9 amidophosphoribosyltransferase compare
EX31_RS23490 -2.6 -3.1 cell envelope integrity protein TolA compare
EX31_RS03690 -2.6 -13.4 3-isopropylmalate dehydratase large subunit compare
EX31_RS14310 -2.6 -5.3 6-phosphofructokinase compare
EX31_RS09955 -2.6 -10.1 anthranilate synthase component 1 compare
EX31_RS11525 -2.6 -4.9 UTP--glucose-1-phosphate uridylyltransferase GalU compare
EX31_RS11465 -2.6 -8.6 imidazole glycerol phosphate synthase subunit HisF compare
EX31_RS23415 -2.6 -9.8 citrate synthase compare
EX31_RS25370 -2.5 -13.8 HTH-type transcriptional regulator MetR compare
EX31_RS14200 -2.5 -14.6 phosphoenolpyruvate carboxylase compare
EX31_RS16860 -2.5 -15.7 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
EX31_RS14190 -2.5 -12.5 N-acetyl-gamma-glutamyl-phosphate reductase compare
EX31_RS11735 -2.5 -10.5 homoserine O-succinyltransferase compare
EX31_RS15020 -2.5 -16.1 ketol-acid reductoisomerase compare
EX31_RS10100 -2.5 -3.8 two-component system response regulator RssB compare
EX31_RS14185 -2.5 -8.2 acetylglutamate kinase compare
EX31_RS05825 -2.4 -1.7 mannitol-1-phosphate 5-dehydrogenase compare
EX31_RS03830 -2.4 -15.1 carbamoyl-phosphate synthase large subunit compare
EX31_RS11440 -2.4 -7.9 histidinol dehydrogenase compare
EX31_RS11445 -2.3 -10.6 histidinol-phosphate transaminase compare
EX31_RS13275 -2.3 -12.6 diaminopimelate decarboxylase compare
EX31_RS02690 -2.3 -6.4 pyrroline-5-carboxylate reductase compare
EX31_RS07585 -2.3 -8.1 bifunctional chorismate mutase/prephenate dehydratase compare
EX31_RS20980 -2.3 -7.4 glutamate 5-kinase compare
EX31_RS03940 -2.2 -10.2 homoserine kinase compare
EX31_RS20975 -2.2 -7.2 glutamate-5-semialdehyde dehydrogenase compare
EX31_RS08150 -2.2 -14.4 inorganic triphosphatase compare
EX31_RS24385 -2.2 -4.9 dihydroorotase compare
EX31_RS22430 -2.2 -2.0 hemolysin expression modulator Hha compare
EX31_RS23440 -2.2 -2.9 2-oxoglutarate dehydrogenase E1 component compare
EX31_RS06055 -2.2 -4.3 phosphate ABC transporter ATP-binding protein PstB compare
EX31_RS03035 -2.1 -9.6 LysE family transporter compare
EX31_RS09975 -2.1 -7.6 tryptophan synthase subunit beta compare
EX31_RS14215 -2.1 -15.0 cystathionine gamma-synthase compare
EX31_RS03835 -2.1 -7.7 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
EX31_RS12825 -2.1 -6.9 ornithine carbamoyltransferase compare
EX31_RS12785 -2.1 -9.6 aspartate carbamoyltransferase compare
EX31_RS09980 -2.0 -6.6 tryptophan synthase subunit alpha compare
EX31_RS09970 -2.0 -6.8 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
EX31_RS09965 -2.0 -6.6 anthranilate phosphoribosyltransferase compare
EX31_RS03030 -1.9 -10.1 helix-turn-helix transcriptional regulator compare
EX31_RS03945 -1.9 -14.8 bifunctional aspartate kinase/homoserine dehydrogenase I compare
EX31_RS11540 -1.9 -2.9 dCTP deaminase compare
EX31_RS03680 -1.9 -9.5 2-isopropylmalate synthase compare
EX31_RS18530 -1.9 -10.9 leucine-responsive transcriptional regulator Lrp compare
EX31_RS07870 -1.8 -9.0 adenylyl-sulfate kinase compare
EX31_RS23485 -1.8 -2.4 colicin uptake protein TolR compare
EX31_RS11455 -1.8 -4.4 imidazole glycerol phosphate synthase subunit HisH compare
EX31_RS03250 -1.8 -9.1 RNA polymerase-binding protein DksA compare
EX31_RS13045 -1.8 -10.4 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
EX31_RS23320 -1.8 -3.7 alpha-D-glucose phosphate-specific phosphoglucomutase compare
EX31_RS14335 -1.8 -3.6 serine O-acetyltransferase compare
EX31_RS15875 -1.8 -10.0 nitrogen regulation protein NR(II) compare
EX31_RS09890 -1.7 -9.6 HTH-type transcriptional regulator CysB compare
EX31_RS21850 -1.7 -2.3 pyridoxine 5'-phosphate synthase compare
EX31_RS14400 -1.7 -5.1 ADP-heptose--LPS heptosyltransferase RfaF compare
EX31_RS11500 -1.7 -2.3 glycosyltransferase family 2 protein compare
EX31_RS14500 -1.7 -6.6 orotate phosphoribosyltransferase compare
EX31_RS13815 -1.7 -1.6 ribonuclease T compare
EX31_RS07785 -1.7 -1.0 carbon storage regulator CsrA compare
EX31_RS14550 -1.7 -2.9 Trk system potassium transporter TrkH compare
EX31_RS15870 -1.7 -2.2 glutamate--ammonia ligase compare
EX31_RS11450 -1.7 -6.3 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
EX31_RS01390 -1.6 -1.4 hypothetical protein compare
EX31_RS23480 -1.6 -3.2 Tol-Pal system protein TolQ compare
EX31_RS11485 -1.6 -5.2 ABC transporter ATP-binding protein compare
EX31_RS07830 -1.6 -6.7 murein hydrolase activator NlpD compare
EX31_RS20175 -1.6 -8.2 cysteine synthase A compare
EX31_RS08745 -1.6 -1.8 50S ribosomal protein L9 compare
EX31_RS23500 -1.6 -4.1 peptidoglycan-associated lipoprotein Pal compare
EX31_RS04630 -1.5 -10.3 aspartate aminotransferase family protein compare
EX31_RS08140 -1.5 -3.1 bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE compare
EX31_RS07900 -1.5 -10.9 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
EX31_RS03790 -1.5 -1.7 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
EX31_RS20450 -1.5 -5.7 IMP dehydrogenase compare
EX31_RS07380 -1.5 -2.3 redox-regulated ATPase YchF compare
EX31_RS15010 -1.5 -9.4 threonine ammonia-lyase, biosynthetic compare
EX31_RS11460 -1.5 -3.1 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
EX31_RS08720 -1.5 -9.1 3'(2'),5'-bisphosphate nucleotidase CysQ compare
EX31_RS12400 -1.4 -1.4 RNA polymerase factor sigma-54 compare
EX31_RS09855 -1.4 -2.2 orotidine-5'-phosphate decarboxylase compare
EX31_RS03645 -1.4 -2.2 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
EX31_RS03775 -1.4 -2.8 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
EX31_RS07905 -1.4 -11.2 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
EX31_RS07895 -1.4 -8.1 phosphoadenylyl-sulfate reductase compare
EX31_RS07955 -1.4 -10.4 GTP diphosphokinase compare
EX31_RS06485 -1.4 -2.6 YdbL family protein compare
EX31_RS14730 -1.4 -1.2 DUF2756 domain-containing protein compare
EX31_RS01695 -1.4 -1.5 RusA family crossover junction endodeoxyribonuclease compare
EX31_RS12240 -1.3 -1.5 rod shape-determining protein MreC compare
EX31_RS05040 -1.3 -4.1 helix-turn-helix domain-containing protein compare
EX31_RS01805 -1.3 -2.0 hypothetical protein compare
EX31_RS07880 -1.3 -10.4 sulfate adenylyltransferase subunit CysD compare
EX31_RS02515 -1.2 -1.2 PAS domain-containing protein compare
EX31_RS14435 -1.2 -5.5 glycosyltransferase family 4 protein compare
EX31_RS10115 -1.2 -7.2 formyltetrahydrofolate deformylase compare
EX31_RS07115 -1.2 -2.0 cysteine dioxygenase compare
EX31_RS14710 -1.2 -10.5 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase compare
EX31_RS07875 -1.2 -9.6 sulfate adenylyltransferase subunit CysN compare
EX31_RS02520 -1.2 -1.5 sigma-54-dependent Fis family transcriptional regulator compare
EX31_RS15085 -1.1 -3.2 lipid III flippase WzxE compare
EX31_RS23495 -1.1 -4.5 Tol-Pal system protein TolB compare
EX31_RS22245 -1.1 -1.8 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
EX31_RS20495 -1.1 -4.7 outer membrane protein assembly factor BamB compare
EX31_RS17285 -1.1 -3.5 carboxy-S-adenosyl-L-methionine synthase CmoA compare
EX31_RS14325 -1.1 -8.0 envelope stress sensor histidine kinase CpxA compare
EX31_RS15000 -1.1 -8.2 branched-chain amino acid transaminase compare
EX31_RS11480 -1.1 -4.7 ABC transporter permease compare
EX31_RS17640 -1.0 -1.6 TetR/AcrR family transcriptional regulator compare
EX31_RS11240 -1.0 -2.9 GNAT family N-acetyltransferase compare
EX31_RS18525 -1.0 -2.4 DNA translocase FtsK compare
EX31_RS10090 -1.0 -1.8 NAD-dependent epimerase compare
EX31_RS15530 -1.0 -1.9 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit compare
EX31_RS08825 -1.0 -6.7 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
EX31_RS03040 -1.0 -5.5 hypothetical protein compare
EX31_RS22250 -1.0 -2.5 ATP-dependent protease ATP-binding subunit ClpX compare
EX31_RS07415 -1.0 -1.6 bifunctional diguanylate cyclase/phosphodiesterase compare
EX31_RS09065 -1.0 -2.1 molecular chaperone compare
EX31_RS11840 -1.0 -6.2 diacylglycerol kinase compare
EX31_RS19655 -1.0 -3.9 beta-ketoacyl-ACP synthase I compare
EX31_RS20180 -1.0 -1.3 phosphocarrier protein Hpr compare
EX31_RS06680 -1.0 -1.2 cellulose biosynthesis protein BcsF compare
EX31_RS20190 -1.0 -1.2 PTS glucose transporter subunit IIA compare
EX31_RS11675 -1.0 -1.6 Holliday junction branch migration protein RuvA compare
EX31_RS09170 -1.0 -1.8 ABC transporter ATP-binding protein compare
EX31_RS06070 -1.0 -5.1 phosphate ABC transporter substrate-binding protein PstS compare
EX31_RS25135 -0.9 -1.9 hypothetical protein compare
EX31_RS15095 -0.9 -3.0 O-antigen assembly polymerase compare
EX31_RS09425 -0.9 -1.9 L-cystine ABC transporter ATP-binding protein YecC compare
EX31_RS18540 -0.9 -0.6 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
EX31_RS14410 -0.9 -7.9 glycosyltransferase family 9 protein compare
EX31_RS07535 -0.9 -2.0 cytochrome b/b6 domain-containing protein compare
EX31_RS00910 -0.9 -2.4 LysR family transcriptional regulator compare
EX31_RS10180 -0.9 -1.1 type II 3-dehydroquinate dehydratase compare
EX31_RS23160 -0.9 -2.9 amino acid ABC transporter ATP-binding protein compare
EX31_RS06065 -0.9 -4.5 phosphate ABC transporter permease PstC compare
EX31_RS24205 -0.9 -2.7 hypothetical protein compare
EX31_RS03400 -0.9 -4.0 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
EX31_RS11010 -0.9 -1.4 DgsA anti-repressor MtfA compare
EX31_RS18480 -0.9 -2.8 ferredoxin-type protein NapF compare
EX31_RS06285 -0.9 -2.3 peptide-methionine (R)-S-oxide reductase MsrB compare
EX31_RS09360 -0.8 -2.3 ABC transporter permease compare
EX31_RS23895 -0.8 -4.3 TetR/AcrR family transcriptional regulator compare
EX31_RS09580 -0.8 -1.1 flagellar motor switch protein FliN compare
EX31_RS14445 -0.8 -4.0 glycosyltransferase family 2 protein compare
EX31_RS14195 -0.8 -6.8 acetylornithine deacetylase compare
EX31_RS07340 -0.8 -1.2 stress-induced protein YchH compare
EX31_RS19610 -0.8 -3.6 4-phosphoerythronate dehydrogenase PdxB compare
EX31_RS07015 -0.8 -1.6 xanthine dehydrogenase accessory protein XdhC compare
EX31_RS04710 -0.8 -2.3 adenine-specific DNA-methyltransferase compare
EX31_RS03955 -0.8 -3.0 two-component system response regulator ArcA compare
EX31_RS23785 -0.8 -1.2 DUF262 domain-containing protein compare
EX31_RS11110 -0.8 -1.1 RidA family protein compare
EX31_RS10020 -0.8 -1.7 YciI family protein compare
EX31_RS22320 -0.8 -4.9 ammonium transporter AmtB compare
EX31_RS24250 -0.8 -4.3 glucan biosynthesis protein G compare
EX31_RS16425 -0.8 -3.2 DUF421 domain-containing protein compare
EX31_RS01715 -0.8 -1.4 DNA replication protein compare
EX31_RS06150 -0.8 -6.1 transcriptional regulator AsnC compare
EX31_RS24255 -0.8 -6.0 glucans biosynthesis glucosyltransferase MdoH compare
EX31_RS13745 -0.7 -2.6 pyridoxal kinase PdxY compare
EX31_RS04725 -0.7 -2.0 shikimate kinase AroK compare
EX31_RS02740 -0.7 -1.1 oxidative damage protection protein compare
EX31_RS10590 -0.7 -1.3 cell division topological specificity factor MinE compare
EX31_RS17865 -0.7 -2.8 sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC compare
EX31_RS01620 -0.7 -1.5 DUF2190 family protein compare
EX31_RS07440 -0.7 -1.6 urea carboxylase-associated family protein compare
EX31_RS24140 -0.7 -1.1 DUF2594 family protein compare
EX31_RS06945 -0.7 -2.0 helix-turn-helix domain-containing protein compare
EX31_RS06865 -0.7 -2.6 pyridoxal phosphate-dependent aminotransferase compare
EX31_RS05245 -0.7 -2.7 PTS sugar transporter subunit IIB compare
EX31_RS05145 -0.7 -4.1 inorganic phosphate transporter PitA compare


Specific Phenotypes

None in this experiment

For Rahnella sp. WP5 in nln experiments