Experiment set4S119 for Rahnella sp. WP5

Compare to:

NLN

200 most important genes:

  gene name fitness t score description  
EX31_RS22625 -3.8 -4.6 5-(carboxyamino)imidazole ribonucleotide mutase compare
EX31_RS22695 -3.8 -11.0 phosphoribosylformylglycinamidine cyclo-ligase compare
EX31_RS03790 -3.6 -4.3 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
EX31_RS05785 -3.4 -5.6 superoxide dismutase [Mn] compare
EX31_RS21470 -3.3 -13.2 phosphoglycerate dehydrogenase compare
EX31_RS11525 -3.3 -5.0 UTP--glucose-1-phosphate uridylyltransferase GalU compare
EX31_RS11455 -3.3 -6.3 imidazole glycerol phosphate synthase subunit HisH compare
EX31_RS09955 -3.2 -12.7 anthranilate synthase component 1 compare
EX31_RS22620 -3.2 -8.8 5-(carboxyamino)imidazole ribonucleotide synthase compare
EX31_RS12510 -3.1 -17.1 FAD-dependent oxidoreductase compare
EX31_RS12825 -3.1 -9.5 ornithine carbamoyltransferase compare
EX31_RS20975 -3.1 -9.3 glutamate-5-semialdehyde dehydrogenase compare
EX31_RS21895 -3.1 -18.5 phosphoribosylformylglycinamidine synthase compare
EX31_RS23245 -3.1 -20.3 asparagine synthase B compare
EX31_RS11465 -3.0 -10.8 imidazole glycerol phosphate synthase subunit HisF compare
EX31_RS02690 -3.0 -7.5 pyrroline-5-carboxylate reductase compare
EX31_RS14190 -3.0 -12.3 N-acetyl-gamma-glutamyl-phosphate reductase compare
EX31_RS20980 -3.0 -7.6 glutamate 5-kinase compare
EX31_RS04035 -3.0 -14.4 phosphoserine phosphatase compare
EX31_RS13160 -3.0 -13.2 amino-acid N-acetyltransferase compare
EX31_RS03695 -3.0 -6.1 3-isopropylmalate dehydratase small subunit compare
EX31_RS13445 -2.9 -17.4 argininosuccinate synthase compare
EX31_RS11440 -2.9 -8.1 histidinol dehydrogenase compare
EX31_RS25370 -2.9 -16.7 HTH-type transcriptional regulator MetR compare
EX31_RS16855 -2.9 -14.6 phosphoribosylamine--glycine ligase compare
EX31_RS07590 -2.9 -4.4 bifunctional chorismate mutase/prephenate dehydrogenase compare
EX31_RS14180 -2.9 -17.7 argininosuccinate lyase compare
EX31_RS14340 -2.9 -2.0 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
EX31_RS15005 -2.9 -17.3 dihydroxy-acid dehydratase compare
EX31_RS15020 -2.9 -18.0 ketol-acid reductoisomerase compare
EX31_RS12515 -2.9 -23.1 glutamate synthase large subunit compare
EX31_RS23320 -2.9 -6.6 alpha-D-glucose phosphate-specific phosphoglucomutase compare
EX31_RS09965 -2.9 -7.5 anthranilate phosphoribosyltransferase compare
EX31_RS09970 -2.8 -11.2 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
EX31_RS14185 -2.8 -8.9 acetylglutamate kinase compare
EX31_RS23415 -2.8 -11.5 citrate synthase compare
EX31_RS22750 -2.8 -4.5 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
EX31_RS16860 -2.8 -18.4 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
EX31_RS03685 -2.7 -15.0 3-isopropylmalate dehydrogenase compare
EX31_RS23485 -2.7 -3.2 colicin uptake protein TolR compare
EX31_RS11450 -2.7 -8.4 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
EX31_RS15880 -2.7 -9.2 nitrogen regulation protein NR(I) compare
EX31_RS03830 -2.7 -15.7 carbamoyl-phosphate synthase large subunit compare
EX31_RS14335 -2.7 -4.0 serine O-acetyltransferase compare
EX31_RS19570 -2.6 -12.9 amidophosphoribosyltransferase compare
EX31_RS03690 -2.6 -13.4 3-isopropylmalate dehydratase large subunit compare
EX31_RS13275 -2.6 -14.3 diaminopimelate decarboxylase compare
EX31_RS14310 -2.6 -5.2 6-phosphofructokinase compare
EX31_RS11460 -2.6 -3.4 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
EX31_RS20190 -2.6 -2.5 PTS glucose transporter subunit IIA compare
EX31_RS03935 -2.6 -13.9 threonine synthase compare
EX31_RS03940 -2.6 -12.8 homoserine kinase compare
EX31_RS24385 -2.5 -5.3 dihydroorotase compare
EX31_RS09980 -2.5 -7.5 tryptophan synthase subunit alpha compare
EX31_RS09975 -2.5 -10.0 tryptophan synthase subunit beta compare
EX31_RS10100 -2.5 -3.7 two-component system response regulator RssB compare
EX31_RS14200 -2.5 -15.3 phosphoenolpyruvate carboxylase compare
EX31_RS09960 -2.4 -7.0 glutamine amidotransferase compare
EX31_RS08150 -2.4 -14.3 inorganic triphosphatase compare
EX31_RS03835 -2.3 -8.8 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
EX31_RS09855 -2.3 -4.2 orotidine-5'-phosphate decarboxylase compare
EX31_RS15870 -2.3 -1.6 glutamate--ammonia ligase compare
EX31_RS14215 -2.3 -16.6 cystathionine gamma-synthase compare
EX31_RS18095 -2.2 -7.7 quinone-dependent dihydroorotate dehydrogenase compare
EX31_RS04105 -2.2 -2.4 helix-turn-helix domain-containing protein compare
EX31_RS11445 -2.1 -10.0 histidinol-phosphate transaminase compare
EX31_RS03035 -2.1 -10.0 LysE family transporter compare
EX31_RS11735 -2.1 -10.0 homoserine O-succinyltransferase compare
EX31_RS03680 -2.1 -11.0 2-isopropylmalate synthase compare
EX31_RS03030 -2.1 -10.6 helix-turn-helix transcriptional regulator compare
EX31_RS03250 -2.0 -10.7 RNA polymerase-binding protein DksA compare
EX31_RS05825 -2.0 -2.0 mannitol-1-phosphate 5-dehydrogenase compare
EX31_RS08140 -2.0 -3.9 bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE compare
EX31_RS11500 -2.0 -2.8 glycosyltransferase family 2 protein compare
EX31_RS18530 -2.0 -13.1 leucine-responsive transcriptional regulator Lrp compare
EX31_RS18255 -2.0 -4.3 3-phosphoserine/phosphohydroxythreonine transaminase compare
EX31_RS03945 -2.0 -15.7 bifunctional aspartate kinase/homoserine dehydrogenase I compare
EX31_RS01970 -1.9 -1.6 hypothetical protein compare
EX31_RS07585 -1.9 -8.6 bifunctional chorismate mutase/prephenate dehydratase compare
EX31_RS03775 -1.9 -4.9 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
EX31_RS09890 -1.9 -11.4 HTH-type transcriptional regulator CysB compare
EX31_RS10115 -1.8 -10.4 formyltetrahydrofolate deformylase compare
EX31_RS10590 -1.8 -2.4 cell division topological specificity factor MinE compare
EX31_RS15875 -1.8 -10.1 nitrogen regulation protein NR(II) compare
EX31_RS20450 -1.8 -6.6 IMP dehydrogenase compare
EX31_RS02530 -1.8 -2.0 ABC transporter ATP-binding protein compare
EX31_RS12400 -1.8 -1.2 RNA polymerase factor sigma-54 compare
EX31_RS14405 -1.7 -2.3 lipopolysaccharide heptosyltransferase RfaC compare
EX31_RS05040 -1.7 -5.5 helix-turn-helix domain-containing protein compare
EX31_RS07895 -1.7 -9.1 phosphoadenylyl-sulfate reductase compare
EX31_RS20175 -1.7 -7.7 cysteine synthase A compare
EX31_RS14500 -1.7 -7.1 orotate phosphoribosyltransferase compare
EX31_RS13045 -1.6 -9.9 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
EX31_RS07900 -1.6 -12.8 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
EX31_RS07955 -1.6 -11.9 GTP diphosphokinase compare
EX31_RS08745 -1.6 -1.8 50S ribosomal protein L9 compare
EX31_RS21020 -1.6 -1.6 D-sedoheptulose 7-phosphate isomerase compare
EX31_RS07905 -1.5 -12.4 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
EX31_RS15085 -1.5 -4.6 lipid III flippase WzxE compare
EX31_RS21850 -1.5 -1.7 pyridoxine 5'-phosphate synthase compare
EX31_RS08720 -1.5 -10.5 3'(2'),5'-bisphosphate nucleotidase CysQ compare
EX31_RS20180 -1.5 -2.7 phosphocarrier protein Hpr compare
EX31_RS15010 -1.5 -9.4 threonine ammonia-lyase, biosynthetic compare
EX31_RS07870 -1.5 -9.2 adenylyl-sulfate kinase compare
EX31_RS12785 -1.5 -8.0 aspartate carbamoyltransferase compare
EX31_RS02515 -1.4 -1.4 PAS domain-containing protein compare
EX31_RS07830 -1.4 -5.9 murein hydrolase activator NlpD compare
EX31_RS01885 -1.3 -1.5 type IV secretion protein Rhs compare
EX31_RS12875 -1.3 -2.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
EX31_RS22250 -1.3 -2.6 ATP-dependent protease ATP-binding subunit ClpX compare
EX31_RS11480 -1.3 -5.2 ABC transporter permease compare
EX31_RS23490 -1.3 -2.3 cell envelope integrity protein TolA compare
EX31_RS07875 -1.3 -10.5 sulfate adenylyltransferase subunit CysN compare
EX31_RS11470 -1.3 -4.5 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
EX31_RS02625 -1.3 -1.9 hypothetical protein compare
EX31_RS18525 -1.3 -2.9 DNA translocase FtsK compare
EX31_RS23500 -1.2 -2.3 peptidoglycan-associated lipoprotein Pal compare
EX31_RS14710 -1.2 -11.0 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase compare
EX31_RS11540 -1.2 -3.1 dCTP deaminase compare
EX31_RS22245 -1.2 -1.8 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
EX31_RS07880 -1.2 -10.5 sulfate adenylyltransferase subunit CysD compare
EX31_RS17640 -1.2 -2.5 TetR/AcrR family transcriptional regulator compare
EX31_RS11485 -1.2 -5.5 ABC transporter ATP-binding protein compare
EX31_RS04630 -1.2 -8.8 aspartate aminotransferase family protein compare
EX31_RS06340 -1.2 -1.4 thiol peroxidase compare
EX31_RS20495 -1.2 -5.1 outer membrane protein assembly factor BamB compare
EX31_RS14550 -1.2 -2.3 Trk system potassium transporter TrkH compare
EX31_RS14445 -1.1 -4.6 glycosyltransferase family 2 protein compare
EX31_RS04390 -1.1 -2.1 DNA polymerase III subunit chi compare
EX31_RS17290 -1.1 -3.0 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB compare
EX31_RS25295 -1.1 -2.4 GhoT/OrtT family toxin compare
EX31_RS23495 -1.1 -4.2 Tol-Pal system protein TolB compare
EX31_RS11510 -1.1 -5.4 dTDP-4-dehydrorhamnose 3,5-epimerase compare
EX31_RS03710 -1.1 -1.6 glucose uptake inhibitor SgrT compare
EX31_RS14435 -1.1 -5.4 glycosyltransferase family 4 protein compare
EX31_RS15000 -1.1 -7.9 branched-chain amino acid transaminase compare
EX31_RS21280 -1.0 -1.8 hydroxymyristoyl-ACP dehydratase compare
EX31_RS04710 -1.0 -3.3 adenine-specific DNA-methyltransferase compare
EX31_RS14325 -1.0 -7.3 envelope stress sensor histidine kinase CpxA compare
EX31_RS25555 -1.0 -2.0 GpE family phage tail protein compare
EX31_RS24600 -1.0 -1.6 hypothetical protein compare
EX31_RS06990 -1.0 -2.8 GntR family transcriptional regulator compare
EX31_RS14410 -1.0 -8.9 glycosyltransferase family 9 protein compare
EX31_RS18540 -1.0 -0.7 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
EX31_RS06060 -1.0 -2.8 phosphate ABC transporter permease PstA compare
EX31_RS11690 -1.0 -1.8 dihydroneopterin triphosphate diphosphatase compare
EX31_RS03040 -0.9 -4.9 hypothetical protein compare
EX31_RS15095 -0.9 -2.0 O-antigen assembly polymerase compare
EX31_RS02520 -0.9 -1.2 sigma-54-dependent Fis family transcriptional regulator compare
EX31_RS04635 -0.9 -5.1 aminodeoxychorismate synthase component II compare
EX31_RS08825 -0.9 -6.5 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
EX31_RS05145 -0.9 -5.0 inorganic phosphate transporter PitA compare
EX31_RS14400 -0.9 -2.6 ADP-heptose--LPS heptosyltransferase RfaF compare
EX31_RS11840 -0.9 -5.9 diacylglycerol kinase compare
EX31_RS14195 -0.9 -7.4 acetylornithine deacetylase compare
EX31_RS16615 -0.9 -2.5 membrane protein compare
EX31_RS13335 -0.9 -1.5 transcriptional regulator compare
EX31_RS09565 -0.9 -1.3 flagellar hook-length control protein FliK compare
EX31_RS23160 -0.8 -1.7 amino acid ABC transporter ATP-binding protein compare
EX31_RS23785 -0.8 -2.0 DUF262 domain-containing protein compare
EX31_RS25415 -0.8 -1.1 helix-turn-helix domain-containing protein compare
EX31_RS10020 -0.8 -1.5 YciI family protein compare
EX31_RS19845 -0.8 -1.2 DNA polymerase II small subunit compare
EX31_RS02360 -0.8 -2.4 CsbD family protein compare
EX31_RS01960 -0.8 -2.1 DUF2931 family protein compare
EX31_RS03955 -0.8 -3.3 two-component system response regulator ArcA compare
EX31_RS11490 -0.8 -2.2 glycosyltransferase compare
EX31_RS12520 -0.8 -5.8 aerobic respiration two-component sensor histidine kinase ArcB compare
EX31_RS01265 -0.8 -1.7 GNAT family N-acetyltransferase compare
EX31_RS24255 -0.8 -6.4 glucans biosynthesis glucosyltransferase MdoH compare
EX31_RS16385 -0.8 -2.6 adenosylmethionine decarboxylase compare
EX31_RS04325 -0.7 -0.8 hypothetical protein compare
EX31_RS13870 -0.7 -1.5 pyruvate kinase PykF compare
EX31_RS01805 -0.7 -1.0 hypothetical protein compare
EX31_RS11435 -0.7 -2.9 ATP phosphoribosyltransferase compare
EX31_RS10325 -0.7 -1.4 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
EX31_RS06150 -0.7 -6.3 transcriptional regulator AsnC compare
EX31_RS22430 -0.7 -1.0 hemolysin expression modulator Hha compare
EX31_RS03400 -0.7 -2.9 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
EX31_RS01200 -0.7 -3.7 hypothetical protein compare
EX31_RS01590 -0.7 -2.5 phage tail assembly protein T compare
EX31_RS06070 -0.7 -3.9 phosphate ABC transporter substrate-binding protein PstS compare
EX31_RS24380 -0.7 -2.0 DNA damage-inducible protein I compare
EX31_RS18150 -0.7 -2.1 MBL fold metallo-hydrolase compare
EX31_RS22810 -0.7 -1.6 helix-turn-helix domain-containing protein compare
EX31_RS15265 -0.7 -2.9 hypothetical protein compare
EX31_RS24325 -0.7 -1.8 LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferasee compare
EX31_RS14415 -0.7 -4.7 sugar glycosyltransferase compare
EX31_RS16980 -0.6 -1.8 ATP-dependent dethiobiotin synthetase BioD compare
EX31_RS12665 -0.6 -2.7 transcriptional regulator ExuR compare
EX31_RS24265 -0.6 -3.0 secY/secA suppressor protein compare
EX31_RS07120 -0.6 -1.8 LysR family transcriptional regulator compare
EX31_RS07340 -0.6 -1.1 stress-induced protein YchH compare
EX31_RS10135 -0.6 -2.2 ROK family transcriptional regulator compare
EX31_RS01075 -0.6 -3.0 manganese-binding transcriptional regulator MntR compare
EX31_RS16985 -0.6 -2.6 ROK family transcriptional regulator compare
EX31_RS07015 -0.6 -1.4 xanthine dehydrogenase accessory protein XdhC compare
EX31_RS22320 -0.6 -4.3 ammonium transporter AmtB compare
EX31_RS19220 -0.6 -4.3 DUF3413 domain-containing protein compare
EX31_RS02365 -0.6 -0.6 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Rahnella sp. WP5 in nln experiments