Experiment set4S117 for Rahnella sp. WP5

Compare to:

NLN

200 most important genes:

  gene name fitness t score description  
EX31_RS18255 -4.2 -5.0 3-phosphoserine/phosphohydroxythreonine transaminase compare
EX31_RS07590 -3.9 -3.8 bifunctional chorismate mutase/prephenate dehydrogenase compare
EX31_RS13160 -3.5 -15.2 amino-acid N-acetyltransferase compare
EX31_RS14405 -3.4 -3.3 lipopolysaccharide heptosyltransferase RfaC compare
EX31_RS22695 -3.4 -9.7 phosphoribosylformylglycinamidine cyclo-ligase compare
EX31_RS16855 -3.4 -15.1 phosphoribosylamine--glycine ligase compare
EX31_RS21895 -3.4 -21.1 phosphoribosylformylglycinamidine synthase compare
EX31_RS04035 -3.4 -14.3 phosphoserine phosphatase compare
EX31_RS23245 -3.4 -22.1 asparagine synthase B compare
EX31_RS15880 -3.3 -10.7 nitrogen regulation protein NR(I) compare
EX31_RS21470 -3.2 -13.2 phosphoglycerate dehydrogenase compare
EX31_RS16860 -3.2 -19.8 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
EX31_RS22750 -3.2 -6.4 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
EX31_RS03835 -3.2 -11.2 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
EX31_RS12510 -3.1 -17.1 FAD-dependent oxidoreductase compare
EX31_RS03695 -3.1 -6.6 3-isopropylmalate dehydratase small subunit compare
EX31_RS22620 -3.1 -8.1 5-(carboxyamino)imidazole ribonucleotide synthase compare
EX31_RS03790 -3.0 -4.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
EX31_RS13445 -3.0 -17.5 argininosuccinate synthase compare
EX31_RS03690 -3.0 -13.0 3-isopropylmalate dehydratase large subunit compare
EX31_RS11525 -3.0 -5.3 UTP--glucose-1-phosphate uridylyltransferase GalU compare
EX31_RS12515 -3.0 -24.4 glutamate synthase large subunit compare
EX31_RS14190 -3.0 -14.2 N-acetyl-gamma-glutamyl-phosphate reductase compare
EX31_RS14335 -3.0 -4.5 serine O-acetyltransferase compare
EX31_RS03685 -2.9 -15.4 3-isopropylmalate dehydrogenase compare
EX31_RS25370 -2.9 -17.1 HTH-type transcriptional regulator MetR compare
EX31_RS14310 -2.9 -5.5 6-phosphofructokinase compare
EX31_RS14185 -2.9 -10.8 acetylglutamate kinase compare
EX31_RS13275 -2.9 -14.9 diaminopimelate decarboxylase compare
EX31_RS14180 -2.8 -16.7 argininosuccinate lyase compare
EX31_RS20975 -2.8 -10.6 glutamate-5-semialdehyde dehydrogenase compare
EX31_RS11470 -2.8 -6.7 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
EX31_RS12825 -2.8 -9.6 ornithine carbamoyltransferase compare
EX31_RS11465 -2.7 -10.7 imidazole glycerol phosphate synthase subunit HisF compare
EX31_RS19570 -2.7 -14.4 amidophosphoribosyltransferase compare
EX31_RS03940 -2.7 -13.3 homoserine kinase compare
EX31_RS24385 -2.7 -5.4 dihydroorotase compare
EX31_RS09965 -2.7 -8.8 anthranilate phosphoribosyltransferase compare
EX31_RS03035 -2.7 -12.1 LysE family transporter compare
EX31_RS08140 -2.6 -4.0 bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE compare
EX31_RS03830 -2.6 -15.9 carbamoyl-phosphate synthase large subunit compare
EX31_RS15020 -2.6 -17.9 ketol-acid reductoisomerase compare
EX31_RS14200 -2.6 -17.2 phosphoenolpyruvate carboxylase compare
EX31_RS23485 -2.6 -3.3 colicin uptake protein TolR compare
EX31_RS22625 -2.6 -4.0 5-(carboxyamino)imidazole ribonucleotide mutase compare
EX31_RS03645 -2.6 -2.9 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
EX31_RS03935 -2.6 -14.7 threonine synthase compare
EX31_RS11460 -2.5 -5.2 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
EX31_RS15005 -2.5 -15.8 dihydroxy-acid dehydratase compare
EX31_RS23415 -2.5 -10.7 citrate synthase compare
EX31_RS09960 -2.5 -7.5 glutamine amidotransferase compare
EX31_RS14215 -2.5 -17.4 cystathionine gamma-synthase compare
EX31_RS11735 -2.4 -11.4 homoserine O-succinyltransferase compare
EX31_RS23490 -2.4 -3.2 cell envelope integrity protein TolA compare
EX31_RS22430 -2.4 -2.3 hemolysin expression modulator Hha compare
EX31_RS11440 -2.4 -6.8 histidinol dehydrogenase compare
EX31_RS20980 -2.4 -7.7 glutamate 5-kinase compare
EX31_RS09975 -2.4 -10.7 tryptophan synthase subunit beta compare
EX31_RS04105 -2.4 -3.9 helix-turn-helix domain-containing protein compare
EX31_RS02690 -2.3 -8.1 pyrroline-5-carboxylate reductase compare
EX31_RS10100 -2.3 -3.5 two-component system response regulator RssB compare
EX31_RS09970 -2.3 -10.4 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
EX31_RS18530 -2.2 -13.8 leucine-responsive transcriptional regulator Lrp compare
EX31_RS11675 -2.2 -3.3 Holliday junction branch migration protein RuvA compare
EX31_RS07585 -2.2 -9.4 bifunctional chorismate mutase/prephenate dehydratase compare
EX31_RS11450 -2.2 -7.8 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
EX31_RS14500 -2.1 -9.9 orotate phosphoribosyltransferase compare
EX31_RS14340 -2.1 -2.0 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
EX31_RS09980 -2.1 -8.2 tryptophan synthase subunit alpha compare
EX31_RS09955 -2.1 -9.6 anthranilate synthase component 1 compare
EX31_RS18095 -2.0 -6.3 quinone-dependent dihydroorotate dehydrogenase compare
EX31_RS07415 -2.0 -2.4 bifunctional diguanylate cyclase/phosphodiesterase compare
EX31_RS11455 -2.0 -4.0 imidazole glycerol phosphate synthase subunit HisH compare
EX31_RS03030 -2.0 -11.9 helix-turn-helix transcriptional regulator compare
EX31_RS08150 -2.0 -12.2 inorganic triphosphatase compare
EX31_RS11500 -2.0 -2.0 glycosyltransferase family 2 protein compare
EX31_RS03945 -2.0 -16.0 bifunctional aspartate kinase/homoserine dehydrogenase I compare
EX31_RS20450 -1.9 -6.8 IMP dehydrogenase compare
EX31_RS03680 -1.9 -11.3 2-isopropylmalate synthase compare
EX31_RS11445 -1.9 -8.9 histidinol-phosphate transaminase compare
EX31_RS03250 -1.9 -10.0 RNA polymerase-binding protein DksA compare
EX31_RS23320 -1.9 -4.9 alpha-D-glucose phosphate-specific phosphoglucomutase compare
EX31_RS09890 -1.9 -11.1 HTH-type transcriptional regulator CysB compare
EX31_RS15870 -1.9 -2.2 glutamate--ammonia ligase compare
EX31_RS14445 -1.8 -7.2 glycosyltransferase family 2 protein compare
EX31_RS07870 -1.8 -9.2 adenylyl-sulfate kinase compare
EX31_RS12785 -1.8 -9.9 aspartate carbamoyltransferase compare
EX31_RS07895 -1.7 -10.6 phosphoadenylyl-sulfate reductase compare
EX31_RS21020 -1.7 -2.8 D-sedoheptulose 7-phosphate isomerase compare
EX31_RS23500 -1.7 -5.0 peptidoglycan-associated lipoprotein Pal compare
EX31_RS21850 -1.7 -2.5 pyridoxine 5'-phosphate synthase compare
EX31_RS25645 -1.7 -1.7 K(+)-transporting ATPase subunit F compare
EX31_RS13045 -1.6 -10.1 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
EX31_RS22245 -1.6 -2.2 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
EX31_RS23495 -1.6 -5.7 Tol-Pal system protein TolB compare
EX31_RS08720 -1.6 -11.9 3'(2'),5'-bisphosphate nucleotidase CysQ compare
EX31_RS07955 -1.6 -11.8 GTP diphosphokinase compare
EX31_RS10115 -1.6 -8.9 formyltetrahydrofolate deformylase compare
EX31_RS05040 -1.6 -5.2 helix-turn-helix domain-containing protein compare
EX31_RS15010 -1.6 -9.8 threonine ammonia-lyase, biosynthetic compare
EX31_RS09855 -1.6 -3.8 orotidine-5'-phosphate decarboxylase compare
EX31_RS12400 -1.6 -1.5 RNA polymerase factor sigma-54 compare
EX31_RS05825 -1.6 -1.8 mannitol-1-phosphate 5-dehydrogenase compare
EX31_RS07830 -1.5 -6.6 murein hydrolase activator NlpD compare
EX31_RS09775 -1.5 -2.7 (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase compare
EX31_RS11490 -1.5 -5.3 glycosyltransferase compare
EX31_RS22250 -1.5 -3.0 ATP-dependent protease ATP-binding subunit ClpX compare
EX31_RS24380 -1.5 -2.1 DNA damage-inducible protein I compare
EX31_RS07900 -1.5 -11.6 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
EX31_RS07905 -1.5 -12.3 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
EX31_RS20175 -1.4 -8.4 cysteine synthase A compare
EX31_RS15875 -1.4 -9.2 nitrogen regulation protein NR(II) compare
EX31_RS20495 -1.4 -6.0 outer membrane protein assembly factor BamB compare
EX31_RS14435 -1.4 -5.3 glycosyltransferase family 4 protein compare
EX31_RS05785 -1.3 -3.6 superoxide dismutase [Mn] compare
EX31_RS04630 -1.3 -9.9 aspartate aminotransferase family protein compare
EX31_RS14710 -1.3 -11.7 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase compare
EX31_RS11110 -1.3 -2.5 RidA family protein compare
EX31_RS12240 -1.3 -2.3 rod shape-determining protein MreC compare
EX31_RS10090 -1.2 -2.7 NAD-dependent epimerase compare
EX31_RS07875 -1.2 -10.2 sulfate adenylyltransferase subunit CysN compare
EX31_RS15085 -1.2 -4.9 lipid III flippase WzxE compare
EX31_RS24600 -1.2 -2.2 hypothetical protein compare
EX31_RS08595 -1.2 -3.4 transcription elongation factor GreA compare
EX31_RS10825 -1.2 -2.3 hypothetical protein compare
EX31_RS15095 -1.2 -3.5 O-antigen assembly polymerase compare
EX31_RS18525 -1.2 -3.3 DNA translocase FtsK compare
EX31_RS06055 -1.2 -2.8 phosphate ABC transporter ATP-binding protein PstB compare
EX31_RS03775 -1.2 -3.9 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
EX31_RS19610 -1.2 -5.4 4-phosphoerythronate dehydrogenase PdxB compare
EX31_RS26000 -1.2 -2.6 GntR family transcriptional regulator compare
EX31_RS06060 -1.2 -4.5 phosphate ABC transporter permease PstA compare
EX31_RS14325 -1.2 -8.6 envelope stress sensor histidine kinase CpxA compare
EX31_RS02515 -1.1 -1.3 PAS domain-containing protein compare
EX31_RS10030 -1.1 -1.1 YciY family protein compare
EX31_RS03400 -1.1 -5.4 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
EX31_RS07880 -1.1 -9.6 sulfate adenylyltransferase subunit CysD compare
EX31_RS01970 -1.1 -1.0 hypothetical protein compare
EX31_RS14410 -1.1 -9.8 glycosyltransferase family 9 protein compare
EX31_RS16980 -1.1 -3.1 ATP-dependent dethiobiotin synthetase BioD compare
EX31_RS03040 -1.1 -5.5 hypothetical protein compare
EX31_RS07535 -1.1 -2.6 cytochrome b/b6 domain-containing protein compare
EX31_RS09065 -1.1 -2.8 molecular chaperone compare
EX31_RS20890 -1.1 -2.3 hypothetical protein compare
EX31_RS15000 -1.1 -8.3 branched-chain amino acid transaminase compare
EX31_RS23480 -1.1 -3.1 Tol-Pal system protein TolQ compare
EX31_RS15155 -1.1 -2.8 diaminopimelate epimerase compare
EX31_RS09580 -1.0 -1.4 flagellar motor switch protein FliN compare
EX31_RS03955 -1.0 -3.8 two-component system response regulator ArcA compare
EX31_RS25415 -1.0 -1.3 helix-turn-helix domain-containing protein compare
EX31_RS14195 -1.0 -8.4 acetylornithine deacetylase compare
EX31_RS06890 -1.0 -3.7 isopenicillin N synthase family oxygenase compare
EX31_RS00625 -1.0 -1.4 YgdI/YgdR family lipoprotein compare
EX31_RS18540 -1.0 -0.7 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
EX31_RS14400 -1.0 -3.6 ADP-heptose--LPS heptosyltransferase RfaF compare
EX31_RS11510 -1.0 -4.4 dTDP-4-dehydrorhamnose 3,5-epimerase compare
EX31_RS11540 -1.0 -2.3 dCTP deaminase compare
EX31_RS18535 -1.0 -4.3 thioredoxin-disulfide reductase compare
EX31_RS19655 -1.0 -3.6 beta-ketoacyl-ACP synthase I compare
EX31_RS04635 -0.9 -5.6 aminodeoxychorismate synthase component II compare
EX31_RS12875 -0.9 -1.7 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
EX31_RS13335 -0.9 -1.7 transcriptional regulator compare
EX31_RS04325 -0.9 -0.9 hypothetical protein compare
EX31_RS02530 -0.9 -1.2 ABC transporter ATP-binding protein compare
EX31_RS11840 -0.9 -6.9 diacylglycerol kinase compare
EX31_RS23895 -0.9 -3.9 TetR/AcrR family transcriptional regulator compare
EX31_RS08745 -0.9 -0.9 50S ribosomal protein L9 compare
EX31_RS09550 -0.9 -2.0 flagellar assembly protein FliH compare
EX31_RS19205 -0.9 -2.1 50S ribosomal protein L25 compare
EX31_RS13740 -0.9 -2.0 glutathione transferase GstA compare
EX31_RS09670 -0.9 -1.9 bleomycin resistance protein compare
EX31_RS13815 -0.8 -0.7 ribonuclease T compare
EX31_RS25910 -0.8 -1.2 hypothetical protein compare
EX31_RS04725 -0.8 -3.2 shikimate kinase AroK compare
EX31_RS24725 -0.8 -4.4 aminodeoxychorismate synthase component 1 compare
EX31_RS20265 -0.8 -1.4 YaiI/YqxD family protein compare
EX31_RS08825 -0.8 -5.9 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
EX31_RS12520 -0.8 -6.3 aerobic respiration two-component sensor histidine kinase ArcB compare
EX31_RS06150 -0.8 -6.5 transcriptional regulator AsnC compare
EX31_RS01805 -0.8 -0.9 hypothetical protein compare
EX31_RS22800 -0.8 -1.6 ArsC family reductase compare
EX31_RS11435 -0.8 -3.1 ATP phosphoribosyltransferase compare
EX31_RS24255 -0.8 -6.3 glucans biosynthesis glucosyltransferase MdoH compare
EX31_RS17285 -0.8 -2.5 carboxy-S-adenosyl-L-methionine synthase CmoA compare
EX31_RS10535 -0.8 -1.8 GtrA family protein compare
EX31_RS11485 -0.8 -3.1 ABC transporter ATP-binding protein compare
EX31_RS09225 -0.8 -2.9 iron-containing alcohol dehydrogenase family protein compare
EX31_RS01660 -0.8 -2.0 hypothetical protein compare
EX31_RS24620 -0.7 -2.0 YebW family protein compare
EX31_RS21280 -0.7 -1.6 hydroxymyristoyl-ACP dehydratase compare
EX31_RS23440 -0.7 -1.6 2-oxoglutarate dehydrogenase E1 component compare
EX31_RS10145 -0.7 -2.1 ABC transporter permease compare
EX31_RS02625 -0.7 -1.8 hypothetical protein compare
EX31_RS15165 -0.7 -3.9 tyrosine recombinase XerC compare
EX31_RS12665 -0.7 -3.6 transcriptional regulator ExuR compare
EX31_RS02775 -0.7 -2.8 hypothetical protein compare
EX31_RS24855 -0.7 -2.5 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF compare
EX31_RS02380 -0.7 -2.1 OsmC family protein compare
EX31_RS04390 -0.7 -1.4 DNA polymerase III subunit chi compare
EX31_RS06070 -0.7 -4.4 phosphate ABC transporter substrate-binding protein PstS compare


Specific Phenotypes

None in this experiment

For Rahnella sp. WP5 in nln experiments