Experiment set4S116 for Rahnella sp. WP5

Compare to:

NLN

200 most important genes:

  gene name fitness t score description  
EX31_RS04105 -3.7 -3.6 helix-turn-helix domain-containing protein compare
EX31_RS21470 -3.6 -13.3 phosphoglycerate dehydrogenase compare
EX31_RS14335 -3.6 -3.5 serine O-acetyltransferase compare
EX31_RS14405 -3.5 -3.4 lipopolysaccharide heptosyltransferase RfaC compare
EX31_RS08140 -3.5 -3.4 bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE compare
EX31_RS18255 -3.5 -5.3 3-phosphoserine/phosphohydroxythreonine transaminase compare
EX31_RS12510 -3.4 -17.6 FAD-dependent oxidoreductase compare
EX31_RS11455 -3.3 -7.0 imidazole glycerol phosphate synthase subunit HisH compare
EX31_RS15880 -3.3 -12.0 nitrogen regulation protein NR(I) compare
EX31_RS03835 -3.3 -12.5 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
EX31_RS22625 -3.2 -3.9 5-(carboxyamino)imidazole ribonucleotide mutase compare
EX31_RS21895 -3.2 -18.5 phosphoribosylformylglycinamidine synthase compare
EX31_RS23245 -3.2 -21.3 asparagine synthase B compare
EX31_RS04035 -3.1 -14.0 phosphoserine phosphatase compare
EX31_RS21020 -3.1 -3.6 D-sedoheptulose 7-phosphate isomerase compare
EX31_RS04645 -3.1 -1.8 DUF2559 family protein compare
EX31_RS13445 -3.0 -18.5 argininosuccinate synthase compare
EX31_RS16855 -3.0 -14.8 phosphoribosylamine--glycine ligase compare
EX31_RS16860 -3.0 -19.2 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
EX31_RS03690 -3.0 -14.8 3-isopropylmalate dehydratase large subunit compare
EX31_RS03685 -2.9 -15.9 3-isopropylmalate dehydrogenase compare
EX31_RS14185 -2.9 -11.7 acetylglutamate kinase compare
EX31_RS14180 -2.9 -17.3 argininosuccinate lyase compare
EX31_RS24385 -2.9 -5.5 dihydroorotase compare
EX31_RS07590 -2.9 -4.4 bifunctional chorismate mutase/prephenate dehydrogenase compare
EX31_RS12515 -2.9 -23.8 glutamate synthase large subunit compare
EX31_RS13275 -2.8 -13.9 diaminopimelate decarboxylase compare
EX31_RS18095 -2.8 -7.7 quinone-dependent dihydroorotate dehydrogenase compare
EX31_RS23320 -2.8 -6.8 alpha-D-glucose phosphate-specific phosphoglucomutase compare
EX31_RS25370 -2.7 -17.0 HTH-type transcriptional regulator MetR compare
EX31_RS11470 -2.7 -6.2 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
EX31_RS19570 -2.7 -12.6 amidophosphoribosyltransferase compare
EX31_RS14190 -2.7 -12.2 N-acetyl-gamma-glutamyl-phosphate reductase compare
EX31_RS15020 -2.7 -17.4 ketol-acid reductoisomerase compare
EX31_RS02690 -2.6 -7.8 pyrroline-5-carboxylate reductase compare
EX31_RS03935 -2.6 -13.2 threonine synthase compare
EX31_RS11460 -2.6 -3.6 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
EX31_RS03830 -2.6 -16.4 carbamoyl-phosphate synthase large subunit compare
EX31_RS14200 -2.6 -17.8 phosphoenolpyruvate carboxylase compare
EX31_RS13160 -2.6 -13.6 amino-acid N-acetyltransferase compare
EX31_RS23485 -2.6 -3.5 colicin uptake protein TolR compare
EX31_RS15005 -2.6 -18.1 dihydroxy-acid dehydratase compare
EX31_RS20975 -2.5 -8.1 glutamate-5-semialdehyde dehydrogenase compare
EX31_RS22750 -2.5 -5.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
EX31_RS11735 -2.5 -12.3 homoserine O-succinyltransferase compare
EX31_RS22620 -2.4 -7.3 5-(carboxyamino)imidazole ribonucleotide synthase compare
EX31_RS20980 -2.4 -7.2 glutamate 5-kinase compare
EX31_RS09960 -2.4 -8.1 glutamine amidotransferase compare
EX31_RS23415 -2.4 -10.2 citrate synthase compare
EX31_RS12825 -2.4 -8.8 ornithine carbamoyltransferase compare
EX31_RS11465 -2.3 -8.0 imidazole glycerol phosphate synthase subunit HisF compare
EX31_RS23480 -2.3 -4.9 Tol-Pal system protein TolQ compare
EX31_RS22695 -2.3 -8.6 phosphoribosylformylglycinamidine cyclo-ligase compare
EX31_RS03035 -2.3 -11.4 LysE family transporter compare
EX31_RS08150 -2.3 -14.7 inorganic triphosphatase compare
EX31_RS03940 -2.3 -12.0 homoserine kinase compare
EX31_RS20450 -2.3 -8.4 IMP dehydrogenase compare
EX31_RS14215 -2.3 -16.8 cystathionine gamma-synthase compare
EX31_RS23500 -2.3 -4.8 peptidoglycan-associated lipoprotein Pal compare
EX31_RS03695 -2.3 -7.1 3-isopropylmalate dehydratase small subunit compare
EX31_RS09970 -2.2 -9.9 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
EX31_RS14340 -2.2 -2.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
EX31_RS18530 -2.2 -13.7 leucine-responsive transcriptional regulator Lrp compare
EX31_RS09955 -2.2 -9.6 anthranilate synthase component 1 compare
EX31_RS09855 -2.2 -4.0 orotidine-5'-phosphate decarboxylase compare
EX31_RS09980 -2.2 -8.0 tryptophan synthase subunit alpha compare
EX31_RS10100 -2.2 -3.6 two-component system response regulator RssB compare
EX31_RS09975 -2.2 -8.6 tryptophan synthase subunit beta compare
EX31_RS09965 -2.2 -7.5 anthranilate phosphoribosyltransferase compare
EX31_RS03680 -2.1 -11.8 2-isopropylmalate synthase compare
EX31_RS12785 -2.1 -10.1 aspartate carbamoyltransferase compare
EX31_RS11445 -2.1 -10.0 histidinol-phosphate transaminase compare
EX31_RS22250 -2.1 -2.5 ATP-dependent protease ATP-binding subunit ClpX compare
EX31_RS14310 -2.0 -5.2 6-phosphofructokinase compare
EX31_RS23495 -2.0 -6.8 Tol-Pal system protein TolB compare
EX31_RS13045 -2.0 -11.1 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
EX31_RS11440 -2.0 -6.7 histidinol dehydrogenase compare
EX31_RS07895 -1.9 -9.8 phosphoadenylyl-sulfate reductase compare
EX31_RS05785 -1.9 -3.9 superoxide dismutase [Mn] compare
EX31_RS07585 -1.9 -7.8 bifunctional chorismate mutase/prephenate dehydratase compare
EX31_RS03250 -1.9 -9.6 RNA polymerase-binding protein DksA compare
EX31_RS04710 -1.9 -5.1 adenine-specific DNA-methyltransferase compare
EX31_RS11450 -1.9 -7.6 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
EX31_RS03030 -1.9 -11.1 helix-turn-helix transcriptional regulator compare
EX31_RS22430 -1.9 -2.1 hemolysin expression modulator Hha compare
EX31_RS15085 -1.9 -4.8 lipid III flippase WzxE compare
EX31_RS04390 -1.8 -2.5 DNA polymerase III subunit chi compare
EX31_RS02365 -1.8 -1.7 hypothetical protein compare
EX31_RS03945 -1.8 -14.3 bifunctional aspartate kinase/homoserine dehydrogenase I compare
EX31_RS25910 -1.7 -1.6 hypothetical protein compare
EX31_RS15875 -1.7 -10.5 nitrogen regulation protein NR(II) compare
EX31_RS09890 -1.6 -9.4 HTH-type transcriptional regulator CysB compare
EX31_RS14500 -1.6 -8.4 orotate phosphoribosyltransferase compare
EX31_RS15870 -1.6 -2.6 glutamate--ammonia ligase compare
EX31_RS07870 -1.6 -8.4 adenylyl-sulfate kinase compare
EX31_RS13815 -1.6 -1.6 ribonuclease T compare
EX31_RS02520 -1.6 -1.8 sigma-54-dependent Fis family transcriptional regulator compare
EX31_RS15010 -1.6 -9.8 threonine ammonia-lyase, biosynthetic compare
EX31_RS23490 -1.5 -2.7 cell envelope integrity protein TolA compare
EX31_RS17285 -1.5 -3.5 carboxy-S-adenosyl-L-methionine synthase CmoA compare
EX31_RS06485 -1.5 -2.7 YdbL family protein compare
EX31_RS11525 -1.5 -2.9 UTP--glucose-1-phosphate uridylyltransferase GalU compare
EX31_RS07905 -1.5 -11.6 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
EX31_RS08720 -1.4 -10.3 3'(2'),5'-bisphosphate nucleotidase CysQ compare
EX31_RS14710 -1.4 -12.5 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase compare
EX31_RS07830 -1.4 -5.0 murein hydrolase activator NlpD compare
EX31_RS07900 -1.4 -11.1 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
EX31_RS07955 -1.4 -10.5 GTP diphosphokinase compare
EX31_RS20495 -1.4 -5.7 outer membrane protein assembly factor BamB compare
EX31_RS14445 -1.4 -5.2 glycosyltransferase family 2 protein compare
EX31_RS03790 -1.4 -2.3 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
EX31_RS00920 -1.4 -2.3 DUF1493 family protein compare
EX31_RS12240 -1.4 -2.4 rod shape-determining protein MreC compare
EX31_RS06055 -1.4 -2.7 phosphate ABC transporter ATP-binding protein PstB compare
EX31_RS24600 -1.3 -2.0 hypothetical protein compare
EX31_RS20265 -1.3 -3.0 YaiI/YqxD family protein compare
EX31_RS05040 -1.3 -4.5 helix-turn-helix domain-containing protein compare
EX31_RS20175 -1.3 -8.5 cysteine synthase A compare
EX31_RS07875 -1.3 -10.9 sulfate adenylyltransferase subunit CysN compare
EX31_RS05825 -1.3 -1.7 mannitol-1-phosphate 5-dehydrogenase compare
EX31_RS14550 -1.3 -2.5 Trk system potassium transporter TrkH compare
EX31_RS10115 -1.2 -8.2 formyltetrahydrofolate deformylase compare
EX31_RS03400 -1.2 -5.1 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
EX31_RS23440 -1.2 -2.1 2-oxoglutarate dehydrogenase E1 component compare
EX31_RS15095 -1.2 -2.6 O-antigen assembly polymerase compare
EX31_RS03955 -1.2 -4.2 two-component system response regulator ArcA compare
EX31_RS07785 -1.2 -1.5 carbon storage regulator CsrA compare
EX31_RS02540 -1.2 -2.5 helix-turn-helix transcriptional regulator compare
EX31_RS07880 -1.2 -10.2 sulfate adenylyltransferase subunit CysD compare
EX31_RS09995 -1.2 -2.8 YkgJ family cysteine cluster protein compare
EX31_RS03040 -1.2 -5.7 hypothetical protein compare
EX31_RS18525 -1.2 -3.0 DNA translocase FtsK compare
EX31_RS04630 -1.2 -8.9 aspartate aminotransferase family protein compare
EX31_RS25690 -1.2 -2.4 tyrosine-type recombinase/integrase compare
EX31_RS11675 -1.2 -2.6 Holliday junction branch migration protein RuvA compare
EX31_RS09670 -1.1 -1.9 bleomycin resistance protein compare
EX31_RS11480 -1.1 -4.0 ABC transporter permease compare
EX31_RS14325 -1.1 -8.1 envelope stress sensor histidine kinase CpxA compare
EX31_RS14435 -1.1 -5.2 glycosyltransferase family 4 protein compare
EX31_RS24855 -1.1 -3.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF compare
EX31_RS14400 -1.1 -3.6 ADP-heptose--LPS heptosyltransferase RfaF compare
EX31_RS14410 -1.1 -9.4 glycosyltransferase family 9 protein compare
EX31_RS18445 -1.1 -1.8 DUF2732 domain-containing protein compare
EX31_RS22245 -1.0 -1.8 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
EX31_RS12400 -1.0 -1.6 RNA polymerase factor sigma-54 compare
EX31_RS11690 -1.0 -2.1 dihydroneopterin triphosphate diphosphatase compare
EX31_RS25725 -1.0 -2.1 hypothetical protein compare
EX31_RS20190 -1.0 -1.3 PTS glucose transporter subunit IIA compare
EX31_RS10590 -1.0 -1.6 cell division topological specificity factor MinE compare
EX31_RS18540 -1.0 -0.7 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
EX31_RS15000 -1.0 -7.4 branched-chain amino acid transaminase compare
EX31_RS11485 -1.0 -4.6 ABC transporter ATP-binding protein compare
EX31_RS11500 -0.9 -1.7 glycosyltransferase family 2 protein compare
EX31_RS02515 -0.9 -1.1 PAS domain-containing protein compare
EX31_RS08745 -0.9 -1.0 50S ribosomal protein L9 compare
EX31_RS00380 -0.9 -2.3 ABC transporter ATP-binding protein compare
EX31_RS20670 -0.9 -1.0 RNA chaperone/antiterminator CspA compare
EX31_RS07135 -0.9 -1.5 hypothetical protein compare
EX31_RS02385 -0.9 -1.1 hypothetical protein compare
EX31_RS23990 -0.9 -1.0 SDR family NAD(P)-dependent oxidoreductase compare
EX31_RS09080 -0.9 -1.5 LysR family transcriptional regulator compare
EX31_RS09065 -0.9 -2.4 molecular chaperone compare
EX31_RS24725 -0.9 -4.8 aminodeoxychorismate synthase component 1 compare
EX31_RS23160 -0.9 -2.2 amino acid ABC transporter ATP-binding protein compare
EX31_RS10580 -0.9 -2.9 septum site-determining protein MinC compare
EX31_RS09600 -0.9 -2.7 flagellar type III secretion system protein FliR compare
EX31_RS11540 -0.9 -2.2 dCTP deaminase compare
EX31_RS06150 -0.8 -7.0 transcriptional regulator AsnC compare
EX31_RS06065 -0.8 -4.6 phosphate ABC transporter permease PstC compare
EX31_RS14195 -0.8 -6.8 acetylornithine deacetylase compare
EX31_RS03775 -0.8 -2.0 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
EX31_RS16725 -0.8 -1.5 phytanoyl-CoA dioxygenase compare
EX31_RS07380 -0.8 -1.0 redox-regulated ATPase YchF compare
EX31_RS01970 -0.8 -1.1 hypothetical protein compare
EX31_RS24220 -0.8 -1.4 hypothetical protein compare
EX31_RS23470 -0.8 -1.4 cyd operon protein YbgE compare
EX31_RS10030 -0.8 -1.3 YciY family protein compare
EX31_RS04635 -0.8 -4.5 aminodeoxychorismate synthase component II compare
EX31_RS16615 -0.8 -2.0 membrane protein compare
EX31_RS20735 -0.8 -2.1 exodeoxyribonuclease V subunit beta compare
EX31_RS19655 -0.8 -3.1 beta-ketoacyl-ACP synthase I compare
EX31_RS08825 -0.8 -5.6 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
EX31_RS19610 -0.8 -3.5 4-phosphoerythronate dehydrogenase PdxB compare
EX31_RS09170 -0.8 -1.0 ABC transporter ATP-binding protein compare
EX31_RS24255 -0.8 -6.3 glucans biosynthesis glucosyltransferase MdoH compare
EX31_RS06985 -0.8 -1.8 iron export ABC transporter permease subunit FetB compare
EX31_RS05145 -0.8 -3.8 inorganic phosphate transporter PitA compare
EX31_RS25300 -0.7 -1.2 YqaE/Pmp3 family membrane protein compare
EX31_RS18480 -0.7 -2.9 ferredoxin-type protein NapF compare
EX31_RS15155 -0.7 -1.8 diaminopimelate epimerase compare
EX31_RS09585 -0.7 -1.6 flagellar biosynthetic protein FliO compare
EX31_RS14095 -0.7 -2.5 yfeABCD regulator yfeE compare
EX31_RS11840 -0.7 -5.2 diacylglycerol kinase compare
EX31_RS02525 -0.7 -3.6 ABC transporter permease compare
EX31_RS18040 -0.7 -5.5 porin OmpA compare
EX31_RS14205 -0.7 -5.1 methylenetetrahydrofolate reductase compare
EX31_RS25290 -0.7 -1.2 hypothetical protein compare
EX31_RS09295 -0.7 -3.1 D-amino-acid transaminase compare
EX31_RS19600 -0.7 -3.6 tRNA pseudouridine(38-40) synthase TruA compare
EX31_RS22320 -0.7 -4.4 ammonium transporter AmtB compare


Specific Phenotypes

None in this experiment

For Rahnella sp. WP5 in nln experiments