Experiment set4S108 for Rahnella sp. WP5

Compare to:

MGL

200 most important genes:

  gene name fitness t score description  
EX31_RS04390 -4.7 -3.3 DNA polymerase III subunit chi compare
EX31_RS03790 -4.6 -3.2 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
EX31_RS11540 -4.5 -3.1 dCTP deaminase compare
EX31_RS25365 -4.1 -2.7 50S ribosomal protein L31 compare
EX31_RS23485 -3.8 -2.7 colicin uptake protein TolR compare
EX31_RS08745 -3.8 -2.6 50S ribosomal protein L9 compare
EX31_RS07415 -3.6 -2.9 bifunctional diguanylate cyclase/phosphodiesterase compare
EX31_RS10035 -3.4 -3.0 cardiolipin synthase compare
EX31_RS18255 -3.3 -5.0 3-phosphoserine/phosphohydroxythreonine transaminase compare
EX31_RS20180 -3.3 -2.8 phosphocarrier protein Hpr compare
EX31_RS19435 -3.3 -3.1 NADH-quinone oxidoreductase subunit A compare
EX31_RS24385 -3.0 -5.0 dihydroorotase compare
EX31_RS06055 -3.0 -3.5 phosphate ABC transporter ATP-binding protein PstB compare
EX31_RS03775 -3.0 -4.6 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
EX31_RS22145 -2.8 -3.3 phosphatidylglycerophosphatase A compare
EX31_RS14405 -2.7 -3.0 lipopolysaccharide heptosyltransferase RfaC compare
EX31_RS11525 -2.7 -4.7 UTP--glucose-1-phosphate uridylyltransferase GalU compare
EX31_RS23480 -2.7 -5.7 Tol-Pal system protein TolQ compare
EX31_RS16655 -2.7 -1.7 hypothetical protein compare
EX31_RS23440 -2.5 -2.4 2-oxoglutarate dehydrogenase E1 component compare
EX31_RS23490 -2.5 -2.9 cell envelope integrity protein TolA compare
EX31_RS07380 -2.4 -2.5 redox-regulated ATPase YchF compare
EX31_RS23495 -2.4 -6.8 Tol-Pal system protein TolB compare
EX31_RS05825 -2.3 -1.6 mannitol-1-phosphate 5-dehydrogenase compare
EX31_RS21020 -2.3 -2.6 D-sedoheptulose 7-phosphate isomerase compare
EX31_RS02530 -2.2 -1.5 ABC transporter ATP-binding protein compare
EX31_RS22625 -2.2 -2.3 5-(carboxyamino)imidazole ribonucleotide mutase compare
EX31_RS05040 -2.2 -4.6 helix-turn-helix domain-containing protein compare
EX31_RS13815 -2.2 -1.2 ribonuclease T compare
EX31_RS04710 -2.1 -4.2 adenine-specific DNA-methyltransferase compare
EX31_RS23320 -2.1 -5.1 alpha-D-glucose phosphate-specific phosphoglucomutase compare
EX31_RS19400 -2.0 -3.1 NADH-quinone oxidoreductase subunit NuoI compare
EX31_RS20495 -2.0 -6.9 outer membrane protein assembly factor BamB compare
EX31_RS19610 -2.0 -6.7 4-phosphoerythronate dehydrogenase PdxB compare
EX31_RS11675 -1.9 -3.1 Holliday junction branch migration protein RuvA compare
EX31_RS16645 -1.9 -1.5 DUF1471 domain-containing protein compare
EX31_RS03955 -1.9 -5.0 two-component system response regulator ArcA compare
EX31_RS22750 -1.9 -2.6 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
EX31_RS24325 -1.8 -3.2 LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferasee compare
EX31_RS06140 -1.8 -9.2 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
EX31_RS20450 -1.8 -6.1 IMP dehydrogenase compare
EX31_RS08140 -1.8 -2.4 bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE compare
EX31_RS15870 -1.8 -2.4 glutamate--ammonia ligase compare
EX31_RS20610 -1.8 -4.2 nitrogen regulatory protein P-II compare
EX31_RS12875 -1.7 -2.6 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
EX31_RS20185 -1.7 -5.0 phosphoenolpyruvate-protein phosphotransferase PtsI compare
EX31_RS13045 -1.7 -9.3 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
EX31_RS22250 -1.7 -2.8 ATP-dependent protease ATP-binding subunit ClpX compare
EX31_RS17245 -1.7 -2.5 hypothetical protein compare
EX31_RS23500 -1.7 -3.5 peptidoglycan-associated lipoprotein Pal compare
EX31_RS14550 -1.6 -2.1 Trk system potassium transporter TrkH compare
EX31_RS14335 -1.6 -2.8 serine O-acetyltransferase compare
EX31_RS06340 -1.6 -3.0 thiol peroxidase compare
EX31_RS02520 -1.6 -1.8 sigma-54-dependent Fis family transcriptional regulator compare
EX31_RS14005 -1.6 -2.2 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
EX31_RS09075 -1.5 -3.6 type 1 fimbrial protein compare
EX31_RS06620 -1.5 -2.3 electron transport complex subunit RsxA compare
EX31_RS26010 -1.5 -1.9 YnhF family membrane protein compare
EX31_RS07590 -1.5 -2.4 bifunctional chorismate mutase/prephenate dehydrogenase compare
EX31_RS18445 -1.4 -2.0 DUF2732 domain-containing protein compare
EX31_RS15095 -1.4 -2.6 O-antigen assembly polymerase compare
EX31_RS19480 -1.4 -5.4 acetate kinase compare
EX31_RS19780 -1.4 -4.5 tRNA-Arg compare
EX31_RS23315 -1.4 -3.7 replication initiation negative regulator SeqA compare
EX31_RS14310 -1.3 -3.2 6-phosphofructokinase compare
EX31_RS07135 -1.3 -1.7 hypothetical protein compare
EX31_RS10825 -1.3 -1.9 hypothetical protein compare
EX31_RS14325 -1.3 -7.3 envelope stress sensor histidine kinase CpxA compare
EX31_RS02515 -1.3 -1.5 PAS domain-containing protein compare
EX31_RS10180 -1.3 -1.5 type II 3-dehydroquinate dehydratase compare
EX31_RS18525 -1.3 -2.3 DNA translocase FtsK compare
EX31_RS18095 -1.3 -3.7 quinone-dependent dihydroorotate dehydrogenase compare
EX31_RS09360 -1.3 -2.4 ABC transporter permease compare
EX31_RS15165 -1.3 -3.2 tyrosine recombinase XerC compare
EX31_RS03400 -1.2 -3.8 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
EX31_RS22245 -1.2 -2.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
EX31_RS18045 -1.2 -2.2 macrodomain Ter protein MatP compare
EX31_RS09080 -1.2 -1.3 LysR family transcriptional regulator compare
EX31_RS00905 -1.2 -2.6 ester cyclase compare
EX31_RS06225 -1.2 -1.9 hypothetical protein compare
EX31_RS09065 -1.2 -1.9 molecular chaperone compare
EX31_RS14340 -1.2 -1.3 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
EX31_RS03480 -1.1 -3.7 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
EX31_RS17100 -1.1 -2.3 colicin immunity protein Cui compare
EX31_RS11010 -1.1 -0.8 DgsA anti-repressor MtfA compare
EX31_RS24655 -1.1 -2.7 hypothetical protein compare
EX31_RS04645 -1.1 -0.9 DUF2559 family protein compare
EX31_RS09925 -1.1 -2.5 alpha-ribazole phosphatase compare
EX31_RS13480 -1.1 -3.1 site-specific tyrosine recombinase XerD compare
EX31_RS25645 -1.1 -1.2 K(+)-transporting ATPase subunit F compare
EX31_RS21850 -1.1 -1.3 pyridoxine 5'-phosphate synthase compare
EX31_RS06690 -1.1 -2.1 hypothetical protein compare
EX31_RS05145 -1.1 -4.4 inorganic phosphate transporter PitA compare
EX31_RS08825 -1.1 -6.5 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
EX31_RS11840 -1.1 -5.5 diacylglycerol kinase compare
EX31_RS10190 -1.1 -2.7 glycosyltransferase compare
EX31_RS23465 -1.1 -3.4 cytochrome d ubiquinol oxidase subunit II compare
EX31_RS25970 -1.1 -2.5 glutathione transferase GstA compare
EX31_RS06500 -1.0 -2.0 serine protease compare
EX31_RS23460 -1.0 -4.4 cytochrome ubiquinol oxidase subunit I compare
EX31_RS02135 -1.0 -2.7 antibiotic biosynthesis monooxygenase compare
EX31_RS22695 -1.0 -3.8 phosphoribosylformylglycinamidine cyclo-ligase compare
EX31_RS07470 -1.0 -1.4 hypothetical protein compare
EX31_RS24555 -1.0 -5.6 two-component system sensor histidine kinase PhoQ compare
EX31_RS12175 -1.0 -1.8 DNA-binding transcriptional regulator Fis compare
EX31_RS19380 -1.0 -2.7 NADH-quinone oxidoreductase subunit M compare
EX31_RS08535 -1.0 -1.6 30S ribosome-binding factor RbfA compare
EX31_RS25340 -1.0 -2.9 hypothetical protein compare
EX31_RS19410 -1.0 -3.9 NADH-quinone oxidoreductase subunit NuoG compare
EX31_RS20925 -1.0 -1.5 hypothetical protein compare
EX31_RS15910 -0.9 -4.4 thiol:disulfide interchange protein DsbA compare
EX31_RS17825 -0.9 -2.6 LacI family DNA-binding transcriptional regulator compare
EX31_RS19305 -0.9 -6.7 ribonucleoside-diphosphate reductase subunit alpha compare
EX31_RS19310 -0.9 -5.5 ribonucleotide-diphosphate reductase subunit beta compare
EX31_RS10435 -0.9 -1.7 biotin-dependent carboxyltransferase family protein compare
EX31_RS11480 -0.9 -3.3 ABC transporter permease compare
EX31_RS19600 -0.9 -3.4 tRNA pseudouridine(38-40) synthase TruA compare
EX31_RS06065 -0.9 -3.8 phosphate ABC transporter permease PstC compare
EX31_RS03835 -0.9 -3.8 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
EX31_RS10665 -0.9 -2.6 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase compare
EX31_RS15865 -0.9 -6.3 ribosome-dependent GTPase TypA compare
EX31_RS22270 -0.9 -0.7 competence protein ComEA compare
EX31_RS23455 -0.9 -2.0 succinate--CoA ligase subunit alpha compare
EX31_RS18540 -0.9 -0.6 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
EX31_RS04325 -0.9 -0.7 hypothetical protein compare
EX31_RS20735 -0.9 -2.1 exodeoxyribonuclease V subunit beta compare
EX31_RS04035 -0.9 -5.0 phosphoserine phosphatase compare
EX31_RS03830 -0.8 -5.5 carbamoyl-phosphate synthase large subunit compare
EX31_RS02625 -0.8 -1.8 hypothetical protein compare
EX31_RS04105 -0.8 -1.4 helix-turn-helix domain-containing protein compare
EX31_RS21280 -0.8 -1.1 hydroxymyristoyl-ACP dehydratase compare
EX31_RS19205 -0.8 -1.5 50S ribosomal protein L25 compare
EX31_RS18625 -0.8 -1.7 heavy metal-binding domain-containing protein compare
EX31_RS14435 -0.8 -3.4 glycosyltransferase family 4 protein compare
EX31_RS23050 -0.8 -2.6 GNAT family N-acetyltransferase compare
EX31_RS04925 -0.8 -2.1 Fe-S biogenesis protein NfuA compare
EX31_RS05855 -0.8 -1.6 glycine--tRNA ligase subunit beta compare
EX31_RS09760 -0.8 -1.7 D-xylose ABC transporter substrate-binding protein compare
EX31_RS15805 -0.8 -1.9 DNA-directed RNA polymerase subunit omega compare
EX31_RS09665 -0.8 -2.3 hypothetical protein compare
EX31_RS14500 -0.8 -3.5 orotate phosphoribosyltransferase compare
EX31_RS19795 -0.8 -1.1 hypothetical protein compare
EX31_RS00540 -0.8 -2.0 pentapeptide MXKDX repeat protein compare
EX31_RS22810 -0.8 -1.4 helix-turn-helix domain-containing protein compare
EX31_RS17290 -0.8 -1.6 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB compare
EX31_RS06595 -0.8 -1.4 electron transport complex subunit E compare
EX31_RS19375 -0.8 -1.7 NADH-quinone oxidoreductase subunit NuoN compare
EX31_RS23895 -0.8 -2.5 TetR/AcrR family transcriptional regulator compare
EX31_RS25300 -0.8 -0.8 YqaE/Pmp3 family membrane protein compare
EX31_RS18370 -0.8 -1.5 tail protein X compare
EX31_RS05830 -0.8 -5.9 PTS mannitol transporter subunit IICBA compare
EX31_RS09580 -0.8 -0.7 flagellar motor switch protein FliN compare
EX31_RS02700 -0.7 -1.8 YggU family protein compare
EX31_RS12785 -0.7 -3.3 aspartate carbamoyltransferase compare
EX31_RS14445 -0.7 -2.8 glycosyltransferase family 2 protein compare
EX31_RS04725 -0.7 -1.6 shikimate kinase AroK compare
EX31_RS26005 -0.7 -1.6 transposase compare
EX31_RS12510 -0.7 -4.9 FAD-dependent oxidoreductase compare
EX31_RS20730 -0.7 -3.5 exodeoxyribonuclease V subunit alpha compare
EX31_RS06000 -0.7 -2.2 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
EX31_RS16615 -0.7 -1.5 membrane protein compare
EX31_RS15535 -0.7 -2.5 LamB/YcsF family protein compare
EX31_RS03250 -0.7 -3.3 RNA polymerase-binding protein DksA compare
EX31_RS16855 -0.7 -4.3 phosphoribosylamine--glycine ligase compare
EX31_RS09225 -0.7 -1.6 iron-containing alcohol dehydrogenase family protein compare
EX31_RS18040 -0.7 -5.1 porin OmpA compare
EX31_RS16675 -0.7 -1.3 histidine utilization repressor compare
EX31_RS19150 -0.7 -3.5 hypothetical protein compare
EX31_RS21785 -0.7 -3.6 ATP-dependent RNA helicase SrmB compare
EX31_RS25630 -0.7 -2.3 DUF3606 domain-containing protein compare
EX31_RS01695 -0.7 -1.6 RusA family crossover junction endodeoxyribonuclease compare
EX31_RS22620 -0.7 -2.8 5-(carboxyamino)imidazole ribonucleotide synthase compare
EX31_RS21895 -0.7 -5.0 phosphoribosylformylglycinamidine synthase compare
EX31_RS04685 -0.7 -2.6 hypothetical protein compare
EX31_RS10355 -0.7 -2.6 NUDIX domain-containing protein compare
EX31_RS24115 -0.7 -1.5 tRNA-Lys compare
EX31_RS20670 -0.7 -0.7 RNA chaperone/antiterminator CspA compare
EX31_RS11450 -0.7 -2.9 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
EX31_RS25135 -0.7 -1.7 hypothetical protein compare
EX31_RS11470 -0.7 -1.8 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
EX31_RS16860 -0.7 -5.0 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
EX31_RS22755 -0.7 -2.9 hypothetical protein compare
EX31_RS24255 -0.7 -4.8 glucans biosynthesis glucosyltransferase MdoH compare
EX31_RS06245 -0.7 -2.2 hypothetical protein compare
EX31_RS06585 -0.7 -0.9 DUF2501 domain-containing protein compare
EX31_RS18800 -0.7 -2.5 DMT family transporter compare
EX31_RS15530 -0.7 -1.1 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit compare
EX31_RS25725 -0.7 -1.2 hypothetical protein compare
EX31_RS05060 -0.7 -3.6 gluconate operon transcriptional repressor GntR compare
EX31_RS20655 -0.7 -1.3 hypothetical protein compare
EX31_RS09170 -0.7 -1.0 ABC transporter ATP-binding protein compare
EX31_RS06070 -0.7 -3.5 phosphate ABC transporter substrate-binding protein PstS compare
EX31_RS02345 -0.7 -2.0 hypothetical protein compare
EX31_RS02525 -0.7 -3.3 ABC transporter permease compare
EX31_RS10145 -0.6 -1.3 ABC transporter permease compare
EX31_RS15085 -0.6 -2.3 lipid III flippase WzxE compare
EX31_RS07290 -0.6 -2.3 C4-dicarboxylic acid transporter DauA compare
EX31_RS02690 -0.6 -2.2 pyrroline-5-carboxylate reductase compare
EX31_RS08545 -0.6 -2.2 transcription termination/antitermination protein NusA compare
EX31_RS17250 -0.6 -1.8 DUF1493 family protein compare


Specific Phenotypes

None in this experiment

For Rahnella sp. WP5 in mgl experiments