Experiment set4S107 for Rahnella sp. WP5

Compare to:

MGL

200 most detrimental genes:

  gene name fitness t score description  
EX31_RS07825 +1.7 15.6 RNA polymerase sigma factor RpoS compare
EX31_RS07830 +1.4 7.0 murein hydrolase activator NlpD compare
EX31_RS10590 +1.3 3.7 cell division topological specificity factor MinE compare
EX31_RS06680 +1.2 3.3 cellulose biosynthesis protein BcsF compare
EX31_RS00980 +1.0 3.0 hypothetical protein compare
EX31_RS02540 +0.9 3.0 helix-turn-helix transcriptional regulator compare
EX31_RS01545 +0.9 1.8 hypothetical protein compare
EX31_RS07340 +0.9 1.3 stress-induced protein YchH compare
EX31_RS07785 +0.9 0.8 carbon storage regulator CsrA compare
EX31_RS03900 +0.9 2.4 molecular chaperone DnaK compare
EX31_RS02180 +0.8 1.7 peptide-methionine (R)-S-oxide reductase MsrB compare
EX31_RS06735 +0.8 3.7 HutD family protein compare
EX31_RS06810 +0.8 1.7 LysR family transcriptional regulator compare
EX31_RS20925 +0.8 2.6 hypothetical protein compare
EX31_RS13780 +0.8 1.8 DUF1656 domain-containing protein compare
EX31_RS01805 +0.7 1.1 hypothetical protein compare
EX31_RS11315 +0.7 3.2 flagellar basal body rod protein FlgB compare
EX31_RS10725 +0.7 1.2 plasmid maintenance protein CcdB compare
EX31_RS07070 +0.7 2.3 aldo/keto reductase compare
EX31_RS09205 +0.7 1.8 siderophore-iron reductase FhuF compare
EX31_RS05485 +0.7 5.1 endoglucanase compare
EX31_RS19845 +0.7 1.7 DNA polymerase II small subunit compare
EX31_RS18010 +0.7 1.9 methylglyoxal synthase compare
EX31_RS01085 +0.7 2.1 ATP-binding cassette domain-containing protein compare
EX31_RS02020 +0.7 1.9 MFS transporter compare
EX31_RS24065 +0.7 1.7 pyrimidine utilization flavin reductase protein F compare
EX31_RS25895 +0.7 2.0 DinI-like family protein compare
EX31_RS06775 +0.7 1.8 iron-containing alcohol dehydrogenase family protein compare
EX31_RS26075 +0.7 1.3 hypothetical protein compare
EX31_RS01620 +0.6 1.9 DUF2190 family protein compare
EX31_RS25665 +0.6 1.4 DUF2502 domain-containing protein compare
EX31_RS08335 +0.6 5.6 cyclic di-GMP phosphodiesterase compare
EX31_RS06565 +0.6 1.6 Ni(II)/Co(II)-binding transcriptional repressor RcnR compare
EX31_RS01190 +0.6 3.0 hypothetical protein compare
EX31_RS14240 +0.6 3.4 ATP-dependent protease subunit HslV compare
EX31_RS24320 +0.6 2.2 DoxX family protein compare
EX31_RS18445 +0.6 1.7 DUF2732 domain-containing protein compare
EX31_RS09285 +0.6 2.1 hypothetical protein compare
EX31_RS24660 +0.6 1.9 MBL fold metallo-hydrolase compare
EX31_RS02425 +0.6 3.7 hypothetical protein compare
EX31_RS01310 +0.6 2.2 DUF2493 domain-containing protein compare
EX31_RS09655 +0.6 0.6 membrane protein compare
EX31_RS15920 +0.6 1.2 YihD family protein compare
EX31_RS17005 +0.6 2.2 carbohydrate ABC transporter permease compare
EX31_RS21805 +0.6 2.4 anti-sigma-E factor RseA compare
EX31_RS10530 +0.6 2.4 anti-adapter protein IraP compare
EX31_RS22665 +0.6 1.7 DUF2633 family protein compare
EX31_RS07085 +0.6 2.2 LysR family transcriptional regulator compare
EX31_RS04320 +0.6 1.4 hypothetical protein compare
EX31_RS09775 +0.6 1.0 (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase compare
EX31_RS14410 +0.6 5.0 glycosyltransferase family 9 protein compare
EX31_RS19365 +0.6 2.4 stress response protein ElaB compare
EX31_RS02410 +0.5 1.6 multidrug DMT transporter compare
EX31_RS24710 +0.5 3.3 EAL domain-containing protein compare
EX31_RS10565 +0.5 2.6 fumarylacetoacetate hydrolase family protein compare
EX31_RS01700 +0.5 1.3 chromosome partitioning protein ParB compare
EX31_RS03650 +0.5 1.4 division/cell wall cluster transcriptional repressor MraZ compare
EX31_RS23625 +0.5 2.8 helix-turn-helix transcriptional regulator compare
EX31_RS06690 +0.5 1.4 hypothetical protein compare
EX31_RS00625 +0.5 0.7 YgdI/YgdR family lipoprotein compare
EX31_RS24340 +0.5 2.2 YceI family protein compare
EX31_RS24450 +0.5 1.5 aminodeoxychorismate lyase compare
EX31_RS07290 +0.5 2.0 C4-dicarboxylic acid transporter DauA compare
EX31_RS19505 +0.5 1.4 PTS sugar transporter subunit IIB compare
EX31_RS14320 +0.5 1.1 envelope stress response regulator transcription factor CpxR compare
EX31_RS19400 +0.5 1.1 NADH-quinone oxidoreductase subunit NuoI compare
EX31_RS10960 +0.5 2.2 epoxyqueuosine reductase QueH compare
EX31_RS18115 +0.5 1.8 aliphatic sulfonate ABC transporter permease SsuC compare
EX31_RS09720 +0.5 2.5 MFS transporter compare
EX31_RS11350 +0.5 1.7 protein phosphatase CheZ compare
EX31_RS25530 +0.5 2.1 hypothetical protein compare
EX31_RS01260 +0.5 0.7 YebG family protein compare
EX31_RS09245 +0.5 2.4 ABC transporter permease subunit compare
EX31_RS07130 +0.5 1.9 ABC transporter substrate-binding protein compare
EX31_RS15690 +0.5 1.7 phage shock protein operon transcriptional activator compare
EX31_RS16955 +0.5 1.7 ABC transporter ATP-binding protein compare
EX31_RS10425 +0.5 2.3 transporter substrate-binding domain-containing protein compare
EX31_RS01515 +0.5 1.7 DinI-like family protein compare
EX31_RS09390 +0.5 1.5 phosphate starvation-inducible protein PhoH compare
EX31_RS10700 +0.5 1.3 hypothetical protein compare
EX31_RS02080 +0.5 1.9 FadR family transcriptional regulator compare
EX31_RS16685 +0.5 1.2 3-hydroxyacyl-CoA dehydrogenase family protein compare
EX31_RS02390 +0.5 1.4 steroid Delta-isomerase compare
EX31_RS09515 +0.5 1.7 GNAT family N-acetyltransferase compare
EX31_RS23550 +0.5 1.5 GNAT family N-acetyltransferase compare
EX31_RS15540 +0.5 0.9 SDR family oxidoreductase compare
EX31_RS13640 +0.5 2.5 L-valine transporter subunit YgaH compare
EX31_RS25140 +0.5 1.2 AlpA family transcriptional regulator compare
EX31_RS10715 +0.5 1.5 hypothetical protein compare
EX31_RS07610 +0.5 1.5 conjugal transfer protein TraR compare
EX31_RS09755 +0.5 2.0 xylose ABC transporter ATP-binding protein compare
EX31_RS21810 +0.5 3.2 sigma-E factor regulatory protein RseB compare
EX31_RS17265 +0.5 1.3 hypothetical protein compare
EX31_RS01960 +0.5 1.0 DUF2931 family protein compare
EX31_RS14610 +0.5 1.7 twin-arginine translocase subunit TatE compare
EX31_RS25590 +0.5 2.2 hypothetical protein compare
EX31_RS06800 +0.5 1.2 ABC transporter permease compare
EX31_RS16665 +0.5 1.6 EamA family transporter compare
EX31_RS01065 +0.5 2.3 glycine zipper family protein compare
EX31_RS17360 +0.4 1.6 molecular chaperone compare
EX31_RS18190 +0.4 2.0 YcbJ family phosphotransferase compare
EX31_RS10435 +0.4 1.3 biotin-dependent carboxyltransferase family protein compare
EX31_RS22680 +0.4 2.6 polyphosphate kinase 1 compare
EX31_RS11200 +0.4 1.2 alpha/beta fold hydrolase compare
EX31_RS01915 +0.4 1.2 hypothetical protein compare
EX31_RS11635 +0.4 1.0 transcriptional antiterminator BglG compare
EX31_RS01610 +0.4 1.1 phage tail protein compare
EX31_RS05450 +0.4 3.8 biofilm formation regulator HmsP compare
EX31_RS09380 +0.4 2.8 putative cation transport regulator ChaB compare
EX31_RS15065 +0.4 2.6 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
EX31_RS03315 +0.4 1.3 type VI secretion system tube protein Hcp compare
EX31_RS21320 +0.4 1.9 5S ribosomal RNA compare
EX31_RS16620 +0.4 1.1 glycosyltransferase compare
EX31_RS01760 +0.4 2.9 hypothetical protein compare
EX31_RS09200 +0.4 2.2 dihydrodipicolinate synthase family protein compare
EX31_RS11385 +0.4 1.2 hypothetical protein compare
EX31_RS23530 +0.4 1.8 nicotinamide riboside transporter PnuC compare
EX31_RS13875 +0.4 2.5 major outer membrane lipoprotein compare
EX31_RS15080 +0.4 3.6 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
EX31_RS01605 +0.4 1.3 tail protein compare
EX31_RS11100 +0.4 2.0 oxidoreductase compare
EX31_RS24795 +0.4 2.6 hypothetical protein compare
EX31_RS23960 +0.4 1.6 DUF3833 domain-containing protein compare
EX31_RS02225 +0.4 1.3 hypothetical protein compare
EX31_RS07015 +0.4 1.1 xanthine dehydrogenase accessory protein XdhC compare
EX31_RS11130 +0.4 1.8 ABC transporter permease compare
EX31_RS24640 +0.4 1.3 hypothetical protein compare
EX31_RS09310 +0.4 0.9 nitrate reductase molybdenum cofactor assembly chaperone compare
EX31_RS04225 +0.4 1.8 YfiR family protein compare
EX31_RS23755 +0.4 0.8 molybdopterin synthase sulfur carrier subunit compare
EX31_RS09290 +0.4 0.7 hypothetical protein compare
EX31_RS10865 +0.4 1.3 hypothetical protein compare
EX31_RS01005 +0.4 1.2 DotU family type IV/VI secretion system protein compare
EX31_RS18155 +0.4 1.5 YcbK family protein compare
EX31_RS13395 +0.4 1.7 M15 family metallopeptidase compare
EX31_RS01710 +0.4 0.6 hypothetical protein compare
EX31_RS14245 +0.4 2.6 HslU--HslV peptidase ATPase subunit compare
EX31_RS09190 +0.4 0.8 ABC transporter permease compare
EX31_RS23970 +0.4 1.6 DUF2878 domain-containing protein compare
EX31_RS12475 +0.4 3.1 Do family serine endopeptidase compare
EX31_RS24880 +0.4 3.5 carboxy terminal-processing peptidase compare
EX31_RS22730 +0.4 1.9 thioredoxin-dependent thiol peroxidase compare
EX31_RS24650 +0.4 1.6 DUF4060 family protein compare
EX31_RS08390 +0.4 2.2 alpha,alpha-phosphotrehalase compare
EX31_RS09500 +0.4 0.9 hypothetical protein compare
EX31_RS14115 +0.4 1.4 metal-dependent hydrolase compare
EX31_RS00780 +0.4 1.4 two-component system response regulator BtsR compare
EX31_RS07365 +0.4 1.5 membrane protein compare
EX31_RS16740 +0.4 1.5 transcriptional regulator compare
EX31_RS18325 +0.4 1.0 baseplate assembly protein compare
EX31_RS12175 +0.4 1.2 DNA-binding transcriptional regulator Fis compare
EX31_RS25125 +0.4 2.0 thr operon leader peptide compare
EX31_RS01315 +0.4 1.5 Na/Pi cotransporter family protein compare
EX31_RS10250 +0.4 1.7 MurR/RpiR family transcriptional regulator compare
EX31_RS19280 +0.4 1.8 transcriptional regulator RcsB compare
EX31_RS13950 +0.4 1.2 hemin-degrading factor compare
EX31_RS22280 +0.4 2.1 7-cyano-7-deazaguanine synthase QueC compare
EX31_RS07490 +0.4 1.5 GntR family transcriptional regulator compare
EX31_RS19880 +0.4 2.3 hydrogenase formation protein HypD compare
EX31_RS10300 +0.4 2.1 LysR family transcriptional regulator compare
EX31_RS24490 +0.4 1.4 penicillin-binding protein activator LpoB compare
EX31_RS17030 +0.4 1.8 FAD-dependent oxidoreductase compare
EX31_RS10325 +0.4 1.3 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
EX31_RS22745 +0.4 2.5 outer membrane protein assembly factor BamC compare
EX31_RS03645 +0.4 1.0 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
EX31_RS26105 +0.4 2.2 hypothetical protein compare
EX31_RS06370 +0.4 1.5 hypothetical protein compare
EX31_RS24770 +0.4 1.6 copper homeostasis periplasmic binding protein CopC compare
EX31_RS09315 +0.4 1.7 nitrate reductase subunit beta compare
EX31_RS15100 +0.4 3.0 lipopolysaccharide N-acetylmannosaminouronosyltransferase compare
EX31_RS19350 +0.4 1.5 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase compare
EX31_RS25110 +0.4 0.9 DUF2474 domain-containing protein compare
EX31_RS09305 +0.4 1.2 respiratory nitrate reductase subunit gamma compare
EX31_RS12010 +0.4 1.9 cysteine protease compare
EX31_RS09710 +0.4 1.1 LysR family transcriptional regulator compare
EX31_RS02920 +0.4 0.8 glycosyltransferase compare
EX31_RS18795 +0.4 1.6 DMT family transporter compare
EX31_RS02465 +0.4 1.4 hypothetical protein compare
EX31_RS01565 +0.4 1.6 tail assembly protein compare
EX31_RS01570 +0.4 1.9 peptidase P60 compare
EX31_RS10755 +0.4 1.9 glycoside hydrolase family 3 protein compare
EX31_RS11005 +0.4 2.4 EAL domain-containing protein compare
EX31_RS04675 +0.4 2.1 nitrite reductase small subunit NirD compare
EX31_RS18600 +0.4 1.6 ubiquinone-dependent pyruvate dehydrogenase compare
EX31_RS18485 +0.4 1.5 Tat proofreading chaperone DmsD compare
EX31_RS09350 +0.4 1.1 ATP-binding cassette domain-containing protein compare
EX31_RS02160 +0.4 1.1 helix-turn-helix domain-containing protein compare
EX31_RS18940 +0.4 1.5 glycosyltransferase family 61 protein compare
EX31_RS20985 +0.4 2.6 sigma factor-binding protein Crl compare
EX31_RS25910 +0.4 0.7 hypothetical protein compare
EX31_RS11700 +0.4 1.6 hydrolase compare
EX31_RS23155 +0.4 2.2 zinc ribbon-containing protein compare
EX31_RS06585 +0.4 0.6 DUF2501 domain-containing protein compare
EX31_RS18825 +0.4 1.9 transcriptional regulator BetI compare
EX31_RS10585 +0.4 1.4 septum site-determining protein MinD compare
EX31_RS18625 +0.4 1.1 heavy metal-binding domain-containing protein compare
EX31_RS06265 +0.4 1.4 MipA/OmpV family protein compare
EX31_RS23875 +0.4 0.9 DUF1471 domain-containing protein compare
EX31_RS23600 +0.4 1.7 molybdenum-dependent transcriptional regulator compare
EX31_RS07100 +0.4 2.0 DUF1161 domain-containing protein compare


Specific Phenotypes

None in this experiment

For Rahnella sp. WP5 in mgl experiments