Experiment set4S106 for Rahnella sp. WP5

Compare to:

MGL

200 most important genes:

  gene name fitness t score description  
EX31_RS04390 -4.7 -3.2 DNA polymerase III subunit chi compare
EX31_RS03790 -4.6 -3.2 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
EX31_RS23500 -4.3 -5.8 peptidoglycan-associated lipoprotein Pal compare
EX31_RS25365 -4.1 -2.8 50S ribosomal protein L31 compare
EX31_RS14405 -4.0 -2.8 lipopolysaccharide heptosyltransferase RfaC compare
EX31_RS11525 -3.9 -3.8 UTP--glucose-1-phosphate uridylyltransferase GalU compare
EX31_RS18255 -3.7 -4.4 3-phosphoserine/phosphohydroxythreonine transaminase compare
EX31_RS23480 -3.6 -5.5 Tol-Pal system protein TolQ compare
EX31_RS23990 -3.6 -2.2 SDR family NAD(P)-dependent oxidoreductase compare
EX31_RS04105 -3.5 -3.4 helix-turn-helix domain-containing protein compare
EX31_RS23495 -3.4 -8.1 Tol-Pal system protein TolB compare
EX31_RS13480 -3.4 -7.2 site-specific tyrosine recombinase XerD compare
EX31_RS11675 -3.3 -4.0 Holliday junction branch migration protein RuvA compare
EX31_RS07380 -3.3 -3.2 redox-regulated ATPase YchF compare
EX31_RS20495 -3.3 -5.9 outer membrane protein assembly factor BamB compare
EX31_RS23320 -3.2 -6.1 alpha-D-glucose phosphate-specific phosphoglucomutase compare
EX31_RS23485 -3.1 -3.0 colicin uptake protein TolR compare
EX31_RS11540 -3.0 -4.7 dCTP deaminase compare
EX31_RS15165 -2.9 -6.6 tyrosine recombinase XerC compare
EX31_RS23490 -2.8 -2.7 cell envelope integrity protein TolA compare
EX31_RS14445 -2.8 -7.6 glycosyltransferase family 2 protein compare
EX31_RS18040 -2.7 -14.9 porin OmpA compare
EX31_RS05040 -2.6 -6.3 helix-turn-helix domain-containing protein compare
EX31_RS18525 -2.6 -3.6 DNA translocase FtsK compare
EX31_RS08140 -2.6 -3.5 bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE compare
EX31_RS23440 -2.5 -3.0 2-oxoglutarate dehydrogenase E1 component compare
EX31_RS20735 -2.4 -3.7 exodeoxyribonuclease V subunit beta compare
EX31_RS08745 -2.4 -2.3 50S ribosomal protein L9 compare
EX31_RS14435 -2.4 -8.2 glycosyltransferase family 4 protein compare
EX31_RS20180 -2.3 -1.9 phosphocarrier protein Hpr compare
EX31_RS05825 -2.3 -1.6 mannitol-1-phosphate 5-dehydrogenase compare
EX31_RS06140 -2.3 -11.5 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
EX31_RS04710 -2.2 -4.9 adenine-specific DNA-methyltransferase compare
EX31_RS19405 -2.1 -4.5 NADH-quinone oxidoreductase subunit NuoH compare
EX31_RS14400 -2.1 -5.0 ADP-heptose--LPS heptosyltransferase RfaF compare
EX31_RS20185 -2.1 -4.9 phosphoenolpyruvate-protein phosphotransferase PtsI compare
EX31_RS19420 -2.1 -3.7 NADH-quinone oxidoreductase subunit NuoE compare
EX31_RS10090 -2.1 -3.7 NAD-dependent epimerase compare
EX31_RS15870 -2.0 -1.4 glutamate--ammonia ligase compare
EX31_RS13045 -2.0 -11.1 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
EX31_RS21020 -2.0 -3.0 D-sedoheptulose 7-phosphate isomerase compare
EX31_RS19435 -2.0 -3.3 NADH-quinone oxidoreductase subunit A compare
EX31_RS03400 -2.0 -6.7 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
EX31_RS20450 -1.9 -6.6 IMP dehydrogenase compare
EX31_RS25415 -1.9 -2.1 helix-turn-helix domain-containing protein compare
EX31_RS22250 -1.9 -2.2 ATP-dependent protease ATP-binding subunit ClpX compare
EX31_RS15085 -1.8 -5.3 lipid III flippase WzxE compare
EX31_RS03775 -1.8 -4.2 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
EX31_RS14550 -1.8 -2.3 Trk system potassium transporter TrkH compare
EX31_RS14310 -1.8 -4.6 6-phosphofructokinase compare
EX31_RS02515 -1.8 -1.2 PAS domain-containing protein compare
EX31_RS19480 -1.6 -6.6 acetate kinase compare
EX31_RS04925 -1.6 -2.4 Fe-S biogenesis protein NfuA compare
EX31_RS21850 -1.6 -2.2 pyridoxine 5'-phosphate synthase compare
EX31_RS12400 -1.6 -1.1 RNA polymerase factor sigma-54 compare
EX31_RS06055 -1.6 -3.1 phosphate ABC transporter ATP-binding protein PstB compare
EX31_RS09855 -1.5 -3.5 orotidine-5'-phosphate decarboxylase compare
EX31_RS12875 -1.5 -2.3 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
EX31_RS22245 -1.5 -1.8 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
EX31_RS23895 -1.5 -3.6 TetR/AcrR family transcriptional regulator compare
EX31_RS22620 -1.5 -5.0 5-(carboxyamino)imidazole ribonucleotide synthase compare
EX31_RS02740 -1.5 -1.6 oxidative damage protection protein compare
EX31_RS14335 -1.4 -3.0 serine O-acetyltransferase compare
EX31_RS07135 -1.4 -1.8 hypothetical protein compare
EX31_RS18095 -1.4 -4.1 quinone-dependent dihydroorotate dehydrogenase compare
EX31_RS26075 -1.4 -1.8 hypothetical protein compare
EX31_RS11500 -1.4 -1.8 glycosyltransferase family 2 protein compare
EX31_RS19380 -1.4 -4.0 NADH-quinone oxidoreductase subunit M compare
EX31_RS17285 -1.4 -3.7 carboxy-S-adenosyl-L-methionine synthase CmoA compare
EX31_RS02520 -1.4 -2.1 sigma-54-dependent Fis family transcriptional regulator compare
EX31_RS22625 -1.3 -2.1 5-(carboxyamino)imidazole ribonucleotide mutase compare
EX31_RS16845 -1.3 -4.5 DNA-binding protein HU-alpha compare
EX31_RS15095 -1.3 -2.8 O-antigen assembly polymerase compare
EX31_RS24385 -1.3 -3.6 dihydroorotase compare
EX31_RS08825 -1.3 -9.3 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
EX31_RS14325 -1.3 -8.6 envelope stress sensor histidine kinase CpxA compare
EX31_RS14620 -1.3 -2.2 SCP2 domain-containing protein compare
EX31_RS06000 -1.3 -3.5 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
EX31_RS19310 -1.3 -7.7 ribonucleotide-diphosphate reductase subunit beta compare
EX31_RS19780 -1.2 -5.3 tRNA-Arg compare
EX31_RS10100 -1.2 -2.3 two-component system response regulator RssB compare
EX31_RS25895 -1.2 -2.0 DinI-like family protein compare
EX31_RS22695 -1.2 -4.8 phosphoribosylformylglycinamidine cyclo-ligase compare
EX31_RS11840 -1.2 -7.7 diacylglycerol kinase compare
EX31_RS20840 -1.1 -1.9 hypothetical protein compare
EX31_RS24325 -1.1 -2.7 LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferasee compare
EX31_RS19375 -1.1 -3.1 NADH-quinone oxidoreductase subunit NuoN compare
EX31_RS06060 -1.1 -2.9 phosphate ABC transporter permease PstA compare
EX31_RS05785 -1.1 -2.3 superoxide dismutase [Mn] compare
EX31_RS10425 -1.1 -3.7 transporter substrate-binding domain-containing protein compare
EX31_RS19655 -1.1 -4.5 beta-ketoacyl-ACP synthase I compare
EX31_RS01970 -1.1 -1.2 hypothetical protein compare
EX31_RS03710 -1.1 -1.6 glucose uptake inhibitor SgrT compare
EX31_RS22750 -1.1 -2.6 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
EX31_RS21895 -1.1 -8.0 phosphoribosylformylglycinamidine synthase compare
EX31_RS03835 -1.1 -5.7 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
EX31_RS01500 -1.1 -2.3 transcriptional regulator compare
EX31_RS16860 -1.1 -8.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
EX31_RS03955 -1.1 -3.7 two-component system response regulator ArcA compare
EX31_RS07590 -1.1 -2.2 bifunctional chorismate mutase/prephenate dehydrogenase compare
EX31_RS14500 -1.0 -5.4 orotate phosphoribosyltransferase compare
EX31_RS19485 -1.0 -4.8 phosphate acetyltransferase compare
EX31_RS05145 -1.0 -5.0 inorganic phosphate transporter PitA compare
EX31_RS03480 -1.0 -3.6 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
EX31_RS09425 -1.0 -2.0 L-cystine ABC transporter ATP-binding protein YecC compare
EX31_RS16855 -1.0 -6.5 phosphoribosylamine--glycine ligase compare
EX31_RS23560 -1.0 -2.0 phosphate starvation-inducible protein compare
EX31_RS15865 -1.0 -7.8 ribosome-dependent GTPase TypA compare
EX31_RS19305 -1.0 -8.1 ribonucleoside-diphosphate reductase subunit alpha compare
EX31_RS07800 -1.0 -4.4 recombinase RecA compare
EX31_RS02360 -1.0 -1.2 CsbD family protein compare
EX31_RS19415 -1.0 -2.4 NADH-quinone oxidoreductase subunit NuoF compare
EX31_RS17290 -1.0 -2.7 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB compare
EX31_RS21470 -1.0 -5.5 phosphoglycerate dehydrogenase compare
EX31_RS24185 -0.9 -3.0 DNA-binding transcriptional repressor DeoR compare
EX31_RS09290 -0.9 -2.2 hypothetical protein compare
EX31_RS18290 -0.9 -1.5 phage tail assembly protein compare
EX31_RS24410 -0.9 -5.3 23S rRNA accumulation protein YceD compare
EX31_RS19700 -0.9 -2.9 phosphohistidine phosphatase SixA compare
EX31_RS11560 -0.9 -1.9 DUF1127 domain-containing protein compare
EX31_RS06340 -0.9 -1.2 thiol peroxidase compare
EX31_RS18540 -0.9 -0.6 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
EX31_RS21825 -0.9 -4.9 elongation factor 4 compare
EX31_RS04035 -0.9 -6.0 phosphoserine phosphatase compare
EX31_RS19570 -0.9 -6.4 amidophosphoribosyltransferase compare
EX31_RS06565 -0.9 -2.5 Ni(II)/Co(II)-binding transcriptional repressor RcnR compare
EX31_RS21785 -0.9 -4.8 ATP-dependent RNA helicase SrmB compare
EX31_RS07785 -0.9 -1.2 carbon storage regulator CsrA compare
EX31_RS13775 -0.9 -2.4 transcriptional regulator SlyA compare
EX31_RS23315 -0.9 -2.6 replication initiation negative regulator SeqA compare
EX31_RS25595 -0.9 -1.2 hypothetical protein compare
EX31_RS09210 -0.8 -2.2 hypothetical protein compare
EX31_RS03315 -0.8 -2.8 type VI secretion system tube protein Hcp compare
EX31_RS01610 -0.8 -2.2 phage tail protein compare
EX31_RS15880 -0.8 -4.4 nitrogen regulation protein NR(I) compare
EX31_RS12785 -0.8 -4.7 aspartate carbamoyltransferase compare
EX31_RS10505 -0.8 -2.3 fatty acid metabolism transcriptional regulator FadR compare
EX31_RS03830 -0.8 -6.1 carbamoyl-phosphate synthase large subunit compare
EX31_RS25290 -0.8 -1.4 hypothetical protein compare
EX31_RS20265 -0.8 -1.4 YaiI/YqxD family protein compare
EX31_RS24600 -0.8 -1.6 hypothetical protein compare
EX31_RS04775 -0.8 -3.4 Hsp33 family molecular chaperone HslO compare
EX31_RS19395 -0.8 -2.0 NADH-quinone oxidoreductase subunit J compare
EX31_RS05830 -0.8 -6.4 PTS mannitol transporter subunit IICBA compare
EX31_RS09490 -0.8 -0.7 hypothetical protein compare
EX31_RS15155 -0.8 -1.2 diaminopimelate epimerase compare
EX31_RS15810 -0.8 -3.1 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase compare
EX31_RS03770 -0.7 -4.8 peptidylprolyl isomerase SurA compare
EX31_RS04725 -0.7 -2.4 shikimate kinase AroK compare
EX31_RS08130 -0.7 -0.8 accessory factor UbiK family protein compare
EX31_RS01390 -0.7 -0.9 hypothetical protein compare
EX31_RS03250 -0.7 -3.6 RNA polymerase-binding protein DksA compare
EX31_RS11105 -0.7 -1.9 cytosine deaminase compare
EX31_RS24300 -0.7 -1.5 DUF2971 domain-containing protein compare
EX31_RS16350 -0.7 -5.5 DsbA family protein compare
EX31_RS10665 -0.7 -2.9 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase compare
EX31_RS16745 -0.7 -4.2 elongation factor Tu compare
EX31_RS01645 -0.7 -2.4 DUF1441 family protein compare
EX31_RS07440 -0.7 -1.5 urea carboxylase-associated family protein compare
EX31_RS23245 -0.7 -5.8 asparagine synthase B compare
EX31_RS23460 -0.7 -3.3 cytochrome ubiquinol oxidase subunit I compare
EX31_RS22505 -0.7 -3.9 adenine phosphoribosyltransferase compare
EX31_RS24255 -0.6 -5.1 glucans biosynthesis glucosyltransferase MdoH compare
EX31_RS17010 -0.6 -1.5 sugar ABC transporter permease compare
EX31_RS02525 -0.6 -4.0 ABC transporter permease compare
EX31_RS22430 -0.6 -0.8 hemolysin expression modulator Hha compare
EX31_RS24875 -0.6 -4.8 RNA chaperone ProQ compare
EX31_RS24645 -0.6 -1.3 DUF2591 domain-containing protein compare
EX31_RS10815 -0.6 -2.1 oxidoreductase compare
EX31_RS24555 -0.6 -3.5 two-component system sensor histidine kinase PhoQ compare
EX31_RS22270 -0.6 -1.0 competence protein ComEA compare
EX31_RS16665 -0.6 -2.2 EamA family transporter compare
EX31_RS06985 -0.6 -1.6 iron export ABC transporter permease subunit FetB compare
EX31_RS02530 -0.6 -0.9 ABC transporter ATP-binding protein compare
EX31_RS06595 -0.6 -1.2 electron transport complex subunit E compare
EX31_RS08535 -0.6 -1.5 30S ribosome-binding factor RbfA compare
EX31_RS09995 -0.6 -1.8 YkgJ family cysteine cluster protein compare
EX31_RS19610 -0.6 -2.8 4-phosphoerythronate dehydrogenase PdxB compare
EX31_RS05000 -0.6 -1.9 glycerol-3-phosphate dehydrogenase compare
EX31_RS24730 -0.6 -2.2 YoaH family protein compare
EX31_RS07955 -0.6 -5.0 GTP diphosphokinase compare
EX31_RS19600 -0.6 -3.1 tRNA pseudouridine(38-40) synthase TruA compare
EX31_RS25410 -0.6 -1.1 transposase compare
EX31_RS13740 -0.6 -1.5 glutathione transferase GstA compare
EX31_RS02105 -0.6 -2.5 SDR family oxidoreductase compare
EX31_RS00985 -0.6 -2.2 type VI secretion protein compare
EX31_RS09940 -0.6 -2.6 23S rRNA pseudouridine(2605) synthase RluB compare
EX31_RS06690 -0.6 -1.3 hypothetical protein compare
EX31_RS07105 -0.6 -1.7 DUF3811 domain-containing protein compare
EX31_RS09920 -0.6 -2.4 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
EX31_RS10535 -0.6 -0.9 GtrA family protein compare
EX31_RS10795 -0.6 -2.7 HlyD family secretion protein compare
EX31_RS23070 -0.6 -1.8 ABC transporter substrate-binding protein compare
EX31_RS24250 -0.6 -3.7 glucan biosynthesis protein G compare
EX31_RS06065 -0.6 -3.0 phosphate ABC transporter permease PstC compare
EX31_RS20925 -0.6 -1.4 hypothetical protein compare
EX31_RS12510 -0.6 -4.0 FAD-dependent oxidoreductase compare
EX31_RS15160 -0.6 -2.3 DUF484 domain-containing protein compare
EX31_RS12175 -0.6 -1.9 DNA-binding transcriptional regulator Fis compare
EX31_RS24595 -0.6 -2.1 membrane protein compare


Specific Phenotypes

None in this experiment

For Rahnella sp. WP5 in mgl experiments