Experiment set4IT096 for Pseudomonas fluorescens FW300-N1B4

Compare to:

Putrescine Dihydrochloride nitrogen source

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_6 -4.2 -2.9 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf1N1B4_5666 -3.8 -2.6 Oxidoreductase probably involved in sulfite reduction compare
Pf1N1B4_2880 -3.7 -10.7 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf1N1B4_2548 -3.5 -5.7 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf1N1B4_2384 -3.4 -9.5 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf1N1B4_2112 -3.3 -11.7 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
Pf1N1B4_2303 -3.3 -12.3 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf1N1B4_3697 -3.2 -8.3 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf1N1B4_1067 -3.2 -5.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf1N1B4_2547 -3.1 -2.2 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf1N1B4_15 -3.1 -3.6 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf1N1B4_1626 -3.1 -5.1 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf1N1B4_3812 -3.1 -8.8 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) compare
Pf1N1B4_1624 -3.1 -7.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf1N1B4_1307 -3.0 -2.9 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_2545 -3.0 -11.2 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Pf1N1B4_2549 -3.0 -7.6 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf1N1B4_1831 -3.0 -9.6 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf1N1B4_1837 -3.0 -2.6 Osmotically inducible protein C compare
Pf1N1B4_1408 -3.0 -4.4 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf1N1B4_742 -2.9 -4.8 Argininosuccinate synthase (EC 6.3.4.5) compare
Pf1N1B4_12 -2.8 -5.6 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf1N1B4_2377 -2.8 -4.3 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Pf1N1B4_1153 -2.8 -4.5 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
Pf1N1B4_350 -2.8 -7.3 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Pf1N1B4_5665 -2.8 -4.4 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf1N1B4_1627 -2.8 -3.7 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf1N1B4_2338 -2.7 -6.0 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_2282 -2.7 -7.7 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_2489 -2.6 -5.2 Biotin synthesis protein BioH compare
Pf1N1B4_1565 -2.6 -3.9 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf1N1B4_2879 -2.6 -5.6 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf1N1B4_2337 -2.6 -4.5 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_1315 -2.6 -7.3 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Pf1N1B4_58 -2.6 -6.1 Transaldolase (EC 2.2.1.2) compare
Pf1N1B4_1830 -2.5 -8.8 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf1N1B4_3506 -2.5 -6.5 Cysteine synthase B (EC 2.5.1.47) compare
Pf1N1B4_847 -2.5 -7.7 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf1N1B4_2254 -2.5 -7.0 Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) (from data) conserved
Pf1N1B4_2878 -2.5 -7.5 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf1N1B4_4065 -2.5 -7.3 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf1N1B4_626 -2.4 -7.7 Quinolinate synthetase (EC 2.5.1.72) compare
Pf1N1B4_1534 -2.4 -15.8 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf1N1B4_5498 -2.4 -2.7 hypothetical protein compare
Pf1N1B4_1 -2.4 -3.0 Colicin V production protein compare
Pf1N1B4_2491 -2.4 -3.8 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf1N1B4_2858 -2.3 -8.7 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf1N1B4_762 -2.3 -5.6 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf1N1B4_578 -2.3 -4.1 enoyl-CoA hydratase, R-specific compare
Pf1N1B4_2280 -2.3 -7.8 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf1N1B4_2487 -2.2 -7.2 Biotin synthase (EC 2.8.1.6) compare
Pf1N1B4_3833 -2.2 -7.9 Major porin and structural outer membrane porin OprF compare
Pf1N1B4_2209 -2.2 -8.9 Exopolyphosphatase (EC 3.6.1.11) compare
Pf1N1B4_1434 -2.1 -6.2 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_2488 -2.1 -6.4 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf1N1B4_2272 -2.1 -3.1 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf1N1B4_3011 -2.1 -2.6 Tyrosine recombinase XerD compare
Pf1N1B4_1533 -2.0 -7.5 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf1N1B4_4038 -2.0 -2.9 NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3) compare
Pf1N1B4_2490 -1.9 -5.2 Biotin synthesis protein BioC compare
Pf1N1B4_3153 -1.9 -2.1 hypothetical protein compare
Pf1N1B4_1625 -1.9 -3.7 FIG00956267: hypothetical protein compare
Pf1N1B4_1317 -1.9 -3.2 Sensor histidine kinase/response regulator compare
Pf1N1B4_4181 -1.9 -3.5 FIG00957123: hypothetical protein compare
Pf1N1B4_1566 -1.9 -7.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf1N1B4_3152 -1.8 -5.6 LysR family transcriptional regulator PA3398 compare
Pf1N1B4_1734 -1.8 -4.7 Succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) compare
Pf1N1B4_1683 -1.8 -2.6 Alpha-ketoglutarate-dependent taurine dioxygenase (EC 1.14.11.17) compare
Pf1N1B4_2682 -1.8 -2.2 Antiholin-like protein LrgA compare
Pf1N1B4_3081 -1.7 -14.2 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf1N1B4_4040 -1.7 -2.9 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) compare
Pf1N1B4_5357 -1.7 -2.5 hypothetical protein compare
Pf1N1B4_2853 -1.6 -2.0 Pantoate--beta-alanine ligase (EC 6.3.2.1) compare
Pf1N1B4_2339 -1.5 -2.5 COG1872 compare
Pf1N1B4_1617 -1.5 -6.3 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) compare
Pf1N1B4_1906 -1.5 -3.5 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Pf1N1B4_652 -1.5 -7.7 Sensory box histidine kinase compare
Pf1N1B4_479 -1.5 -2.9 Butyryl-CoA dehydrogenase (EC 1.3.99.2) compare
Pf1N1B4_2401 -1.5 -2.7 Lipoprotein, putative compare
Pf1N1B4_2486 -1.5 -1.8 hypothetical protein compare
Pf1N1B4_74 -1.4 -2.5 hypothetical protein compare
Pf1N1B4_4437 -1.4 -3.0 hypothetical protein compare
Pf1N1B4_2859 -1.4 -9.5 Two-component sensor CbrA: intrcellular carbon:nitrogen balance compare
Pf1N1B4_3709 -1.4 -3.2 Adenosylcobinamide-phosphate synthase (EC 6.3.1.10) compare
Pf1N1B4_27 -1.4 -3.4 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf1N1B4_1327 -1.4 -6.8 Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) compare
Pf1N1B4_3906 -1.3 -3.8 DNA topoisomerase I (EC 5.99.1.2) compare
Pf1N1B4_4436 -1.3 -3.1 Glutaminase (EC 3.5.1.2) compare
Pf1N1B4_3973 -1.3 -3.4 ABC-type spermidine/putrescine transport system, permease component I compare
Pf1N1B4_3518 -1.3 -2.1 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Pf1N1B4_1329 -1.3 -4.7 Cobalamin biosynthesis protein CobG compare
Pf1N1B4_5224 -1.3 -2.7 tRNA-Arg-CCT compare
Pf1N1B4_1733 -1.3 -6.0 5-aminovalerate aminotransferase (EC 2.6.1.48) / Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) conserved
Pf1N1B4_2400 -1.3 -1.9 FIG00955006: hypothetical protein compare
Pf1N1B4_188 -1.3 -2.0 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_866 -1.3 -1.7 Iron-sulfur cluster regulator IscR compare
Pf1N1B4_35 -1.3 -2.2 hypothetical protein compare
Pf1N1B4_2010 -1.3 -4.2 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf1N1B4_2893 -1.3 -5.3 Carbonic anhydrase (EC 4.2.1.1) compare
Pf1N1B4_5219 -1.3 -2.3 tRNA-Gly-CCC compare
Pf1N1B4_1475 -1.3 -5.3 FIG00962376: hypothetical protein compare
Pf1N1B4_3715 -1.3 -3.6 Cobalamin synthase compare
Pf1N1B4_3707 -1.3 -5.5 Cobyrinic acid A,C-diamide synthase compare
Pf1N1B4_1115 -1.3 -6.9 Dna binding response regulator PrrA (RegA) compare
Pf1N1B4_4516 -1.2 -2.4 Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism compare
Pf1N1B4_231 -1.2 -3.9 Sensor histidine kinase compare
Pf1N1B4_3350 -1.2 -1.9 FIG00954807: hypothetical protein compare
Pf1N1B4_4039 -1.2 -4.7 NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) / NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) compare
Pf1N1B4_4028 -1.2 -2.9 NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) compare
Pf1N1B4_2352 -1.2 -4.1 Glutathione synthetase (EC 6.3.2.3) compare
Pf1N1B4_3322 -1.2 -6.2 L-aspartate oxidase (EC 1.4.3.16) compare
Pf1N1B4_5860 -1.2 -1.9 Two-component response regulator compare
Pf1N1B4_2005 -1.2 -1.6 ATP-dependent DNA helicase UvrD/PcrA compare
Pf1N1B4_1116 -1.2 -7.7 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf1N1B4_4857 -1.2 -4.2 Chemotaxis protein methyltransferase CheR (EC 2.1.1.80) compare
Pf1N1B4_3547 -1.2 -1.6 DNA-binding response regulator compare
Pf1N1B4_3519 -1.2 -2.8 Lipase (EC 3.1.1.3) compare
Pf1N1B4_4140 -1.2 -2.3 hypothetical protein compare
Pf1N1B4_3980 -1.1 -2.6 Transcriptional regulator, HxlR family compare
Pf1N1B4_1870 -1.1 -2.2 Zinc ABC transporter, ATP-binding protein ZnuC compare
Pf1N1B4_2493 -1.1 -2.2 Acyl-CoA dehydrogenase (EC 1.3.8.7) compare
Pf1N1B4_3713 -1.1 -1.3 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) compare
Pf1N1B4_5777 -1.1 -1.9 Nitrous oxide reductase maturation protein, outer-membrane lipoprotein NosL compare
Pf1N1B4_2208 -1.1 -4.8 Polyphosphate kinase (EC 2.7.4.1) compare
Pf1N1B4_3038 -1.1 -4.1 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) compare
Pf1N1B4_384 -1.1 -1.6 proteinase inhibitor compare
Pf1N1B4_2173 -1.1 -1.7 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf1N1B4_3002 -1.1 -2.5 hypothetical protein compare
Pf1N1B4_3825 -1.1 -2.4 FIG00959101: hypothetical protein compare
Pf1N1B4_4134 -1.1 -2.1 Na+ driven multidrug efflux pump compare
Pf1N1B4_2485 -1.1 -1.5 Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy compare
Pf1N1B4_2854 -1.1 -2.9 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11) compare
Pf1N1B4_3356 -1.1 -1.8 Cyclic nucleotide-binding protein compare
Pf1N1B4_76 -1.1 -2.3 ATP binding protein compare
Pf1N1B4_5239 -1.1 -2.5 hypothetical protein compare
Pf1N1B4_4972 -1.1 -1.9 CELL PROCESSES; Adaptation; adaptations, atypical conditions compare
Pf1N1B4_1611 -1.1 -3.4 Nitrogen regulation protein NR(I) compare
Pf1N1B4_843 -1.1 -3.2 Transcriptional regulator, LysR family compare
Pf1N1B4_2225 -1.1 -6.2 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) compare
Pf1N1B4_617 -1.0 -1.8 Carbamate kinase (EC 2.7.2.2) compare
Pf1N1B4_3451 -1.0 -2.3 Aspartokinase (EC 2.7.2.4) compare
Pf1N1B4_4320 -1.0 -2.5 Phosphonate ABC transporter permease protein phnE2 (TC 3.A.1.9.1) compare
Pf1N1B4_1675 -1.0 -1.9 Transcriptional regulator compare
Pf1N1B4_3006 -1.0 -3.9 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf1N1B4_1971 -1.0 -2.6 SAM-dependent methyltransferases compare
Pf1N1B4_1750 -1.0 -2.0 Death on curing protein, Doc toxin compare
Pf1N1B4_2114 -1.0 -4.0 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf1N1B4_4931 -1.0 -1.6 Glutarate-semialdehyde dehydrogenase (EC 1.2.1.20); Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.79) compare
Pf1N1B4_1326 -1.0 -3.6 Cobalamin biosynthesis protein CbiG / Cobalt-precorrin-3b C17-methyltransferase compare
Pf1N1B4_5658 -1.0 -2.9 Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133) compare
Pf1N1B4_5745 -1.0 -1.5 FIG139928: Putative protease compare
Pf1N1B4_1403 -1.0 -4.4 3'-to-5' exoribonuclease RNase R compare
Pf1N1B4_4699 -1.0 -1.9 Multidrug translocase MdfA compare
Pf1N1B4_3632 -1.0 -2.9 Flagellar motor rotation protein MotB compare
Pf1N1B4_4123 -1.0 -1.5 Isochorismate pyruvate-lyase (EC 4.-.-.-) compare
Pf1N1B4_683 -1.0 -2.9 Fumarate hydratase class I, aerobic (EC 4.2.1.2) compare
Pf1N1B4_3711 -1.0 -4.3 Cobyric acid synthase (EC 6.3.5.10) compare
Pf1N1B4_3466 -1.0 -2.0 FIG00955605: hypothetical protein compare
Pf1N1B4_2009 -0.9 -3.1 LysR family transcriptional regulator PA5437 compare
Pf1N1B4_1872 -0.9 -4.5 Zinc ABC transporter, periplasmic-binding protein ZnuA compare
Pf1N1B4_615 -0.9 -1.9 Arginine deiminase (EC 3.5.3.6) compare
Pf1N1B4_753 -0.9 -2.1 hypothetical protein compare
Pf1N1B4_678 -0.9 -4.5 Pyruvate kinase (EC 2.7.1.40) compare
Pf1N1B4_1579 -0.9 -2.6 Imidazolonepropionase (EC 3.5.2.7) (from data) compare
Pf1N1B4_4851 -0.9 -1.8 Transcriptional regulator of various polyols utilization, AraC family compare
Pf1N1B4_2850 -0.9 -4.2 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf1N1B4_4192 -0.9 -2.0 Hydrolase, alpha/beta fold family functionally coupled to Phosphoribulokinase compare
Pf1N1B4_1016 -0.9 -5.5 FIG00954263: hypothetical protein compare
Pf1N1B4_2008 -0.9 -4.9 Phosphogluconate repressor HexR, RpiR family compare
Pf1N1B4_5446 -0.9 -2.3 hypothetical protein compare
Pf1N1B4_3855 -0.9 -2.3 Chromosome partition protein smc compare
Pf1N1B4_4833 -0.9 -2.3 DNA-binding response regulator, LuxR family compare
Pf1N1B4_267 -0.9 -1.4 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf1N1B4_3168 -0.9 -2.0 AmpG permease compare
Pf1N1B4_1311 -0.9 -2.9 Probable transmembrane protein compare
Pf1N1B4_5747 -0.9 -1.7 Molybdopterin biosynthesis protein MoeA compare
Pf1N1B4_1336 -0.9 -1.3 Putative multicopper oxidases compare
Pf1N1B4_348 -0.9 -2.5 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf1N1B4_5979 -0.9 -1.9 Ureidoglycolate/malate/sulfolactate dehydrogenase family (EC 1.1.1.-) compare
Pf1N1B4_3098 -0.9 -2.1 Ribonuclease HII (EC 3.1.26.4) compare
Pf1N1B4_2874 -0.9 -1.4 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf1N1B4_2851 -0.9 -1.4 hypothetical protein compare
Pf1N1B4_1653 -0.9 -3.7 Branched-chain amino acid transport protein AzlC compare
Pf1N1B4_257 -0.9 -3.4 sensor histidine kinase/response regulator compare
Pf1N1B4_102 -0.9 -1.3 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Pf1N1B4_1065 -0.8 -3.5 Histidinol-phosphate aminotransferase (EC 2.6.1.9) compare
Pf1N1B4_327 -0.8 -1.2 hypothetical protein compare
Pf1N1B4_3246 -0.8 -2.4 RND efflux system, inner membrane transporter CmeB compare
Pf1N1B4_3454 -0.8 -3.1 Mg/Co/Ni transporter MgtE / CBS domain compare
Pf1N1B4_1236 -0.8 -3.4 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf1N1B4_3985 -0.8 -1.6 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) compare
Pf1N1B4_1234 -0.8 -2.5 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Pf1N1B4_430 -0.8 -1.6 hypothetical protein compare
Pf1N1B4_4667 -0.8 -2.0 Acriflavin resistance plasma membrane protein compare
Pf1N1B4_1261 -0.8 -2.0 FIG00953575: hypothetical protein compare
Pf1N1B4_4299 -0.8 -2.0 sensor histidine kinase compare
Pf1N1B4_4015 -0.8 -3.1 FIG00958844: hypothetical protein compare
Pf1N1B4_1869 -0.8 -3.5 Zinc ABC transporter, inner membrane permease protein ZnuB compare
Pf1N1B4_2807 -0.8 -1.5 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
Pf1N1B4_627 -0.8 -1.8 hypothetical protein compare


Specific Phenotypes

For 2 genes in this experiment

For nitrogen source Putrescine Dihydrochloride in Pseudomonas fluorescens FW300-N1B4

For nitrogen source Putrescine Dihydrochloride across organisms