Experiment set4IT096 for Shewanella sp. ANA-3

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outer cut, LB soft agar motility assay

Group: motility
Media: LB + Agar (3 g/L)
Culturing: ANA3_ML1, Agar plate, Aerobic, at 30 (C), shaken=0 rpm, (Solid)
By: Mark on 1/14/2015
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride

Specific Phenotypes

For 8 genes in this experiment

For motility Agar in Shewanella sp. ANA-3

For motility Agar across organisms

SEED Subsystems

Subsystem #Specific
Bacterial Chemotaxis 2
Bacterial hemoglobins 2

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
5-methylbenzimidazolyl adenosylcobamide biosynthesis from adenosylcobinamide-GDP 3 3 1
benzimidazolyl adenosylcobamide biosynthesis from adenosylcobinamide-GDP 3 3 1
2-methyladeninyl adenosylcobamide biosynthesis from adenosylcobinamide-GDP 3 3 1
adeninyl adenosylcobamide biosynthesis from adenosylcobinamide-GDP 3 3 1
5-methoxybenzimidazolyl adenosylcobamide biosynthesis from adenosylcobinamide-GDP 3 3 1
5-hydroxybenzimidazolyl adenosylcobamide biosynthesis from adenosylcobinamide-GDP 3 3 1
5-methoxy-6-methylbenzimidazolyl adenosylcobamide biosynthesis from adenosylcobinamide-GDP 3 3 1
adenosylcobalamin biosynthesis from adenosylcobinamide-GDP I 3 3 1
phenyl adenosylcobamide biosynthesis from adenosylcobinamide-GDP 3 2 1
4-methylphenyl adenosylcobamide biosynthesis from adenosylcobinamide-GDP 3 2 1
adenosylcobalamin biosynthesis from adenosylcobinamide-GDP II 4 2 1
superpathway of adenosylcobalamin salvage from cobinamide I 8 8 1
superpathway of adenosylcobalamin salvage from cobinamide II 9 8 1
adenosylcobalamin biosynthesis II (aerobic) 33 18 1
adenosylcobalamin biosynthesis I (anaerobic) 36 18 1