Experiment set4IT095 for Pseudomonas fluorescens FW300-N1B4

Compare to:

Carnitine Hydrochloride nitrogen source

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_2880 -3.8 -10.3 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf1N1B4_6 -3.8 -5.0 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf1N1B4_15 -3.6 -3.5 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf1N1B4_2548 -3.6 -5.9 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf1N1B4_1307 -3.6 -2.4 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_2428 -3.4 -8.1 FIG143042: Thioesterase-like protein conserved
Pf1N1B4_1624 -3.4 -6.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf1N1B4_1534 -3.4 -17.2 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf1N1B4_1408 -3.3 -4.4 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf1N1B4_2303 -3.3 -13.4 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf1N1B4_2458 -3.2 -2.2 Sarcosine oxidase gamma subunit (EC 1.5.3.1) compare
Pf1N1B4_2547 -3.2 -2.2 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf1N1B4_1067 -3.2 -6.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf1N1B4_1831 -3.2 -9.4 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf1N1B4_1533 -3.1 -6.9 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf1N1B4_2338 -3.1 -5.5 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_2384 -3.1 -10.5 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf1N1B4_350 -3.0 -7.0 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Pf1N1B4_5666 -3.0 -3.9 Oxidoreductase probably involved in sulfite reduction compare
Pf1N1B4_2284 -3.0 -4.0 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf1N1B4_2549 -3.0 -8.5 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf1N1B4_1830 -3.0 -8.8 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf1N1B4_2545 -2.9 -11.5 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Pf1N1B4_742 -2.9 -6.3 Argininosuccinate synthase (EC 6.3.4.5) compare
Pf1N1B4_2112 -2.8 -13.6 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
Pf1N1B4_2440 -2.8 -5.3 Predicted L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit YkgF conserved
Pf1N1B4_2455 -2.8 -6.1 Sarcosine oxidase beta subunit (EC 1.5.3.1) conserved
Pf1N1B4_2282 -2.8 -8.2 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_1626 -2.8 -7.0 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf1N1B4_1565 -2.7 -4.1 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf1N1B4_2208 -2.7 -7.1 Polyphosphate kinase (EC 2.7.4.1) compare
Pf1N1B4_5665 -2.7 -4.7 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf1N1B4_58 -2.7 -5.3 Transaldolase (EC 2.2.1.2) compare
Pf1N1B4_1625 -2.7 -5.3 FIG00956267: hypothetical protein compare
Pf1N1B4_1434 -2.6 -7.2 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_2526 -2.6 -14.4 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf1N1B4_1610 -2.6 -3.9 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf1N1B4_1315 -2.6 -8.2 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Pf1N1B4_847 -2.6 -7.7 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf1N1B4_2878 -2.6 -8.4 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf1N1B4_12 -2.6 -6.2 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf1N1B4_3812 -2.6 -8.7 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) compare
Pf1N1B4_4299 -2.6 -3.7 sensor histidine kinase compare
Pf1N1B4_1627 -2.6 -4.1 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf1N1B4_2879 -2.6 -5.7 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf1N1B4_2010 -2.5 -6.1 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf1N1B4_3506 -2.5 -7.3 Cysteine synthase B (EC 2.5.1.47) compare
Pf1N1B4_3833 -2.5 -7.6 Major porin and structural outer membrane porin OprF compare
Pf1N1B4_3081 -2.5 -18.7 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf1N1B4_2272 -2.4 -3.2 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf1N1B4_2430 -2.4 -4.7 FIG004891: hypothetical protein in carnitine cluster compare
Pf1N1B4_2439 -2.4 -7.7 DgcA Dimethylglycine demethylase subunit A conserved
Pf1N1B4_2456 -2.4 -2.2 Sarcosine oxidase delta subunit (EC 1.5.3.1) compare
Pf1N1B4_762 -2.4 -5.8 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf1N1B4_2280 -2.3 -8.4 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf1N1B4_1317 -2.3 -3.6 Sensor histidine kinase/response regulator compare
Pf1N1B4_2431 -2.3 -3.9 L-proline glycine betaine binding ABC transporter protein ProX (TC 3.A.1.12.1) compare
Pf1N1B4_2438 -2.3 -6.1 FIG00953113: hypothetical protein conserved
Pf1N1B4_2337 -2.2 -5.0 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_2454 -2.2 -5.9 Serine hydroxymethyltransferase (EC 2.1.2.1) (from data) conserved
Pf1N1B4_2225 -2.2 -10.5 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) compare
Pf1N1B4_2850 -2.2 -7.3 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf1N1B4_4678 -2.2 -4.4 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) compare
Pf1N1B4_2437 -2.2 -4.7 Microsomal dipeptidase (EC 3.4.13.19) compare
Pf1N1B4_2421 -2.1 -3.6 L-proline glycine betaine ABC transport system permease protein ProW (TC 3.A.1.12.1) compare
Pf1N1B4_2425 -2.1 -4.9 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Pf1N1B4_4065 -2.1 -7.2 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf1N1B4_2429 -2.1 -5.1 Carnitine 3-dehydrogenase (EC 1.1.1.108) (from data) conserved
Pf1N1B4_2487 -2.1 -7.6 Biotin synthase (EC 2.8.1.6) compare
Pf1N1B4_2457 -2.1 -8.4 Sarcosine oxidase alpha subunit (EC 1.5.3.1) conserved
Pf1N1B4_2432 -2.1 -2.3 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Pf1N1B4_2377 -2.1 -5.8 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Pf1N1B4_3768 -2.0 -3.6 Homoserine/homoserine lactone efflux protein compare
Pf1N1B4_2009 -2.0 -4.8 LysR family transcriptional regulator PA5437 compare
Pf1N1B4_2420 -2.0 -6.6 L-proline glycine betaine ABC transport system permease protein ProV (TC 3.A.1.12.1) conserved
Pf1N1B4_1611 -2.0 -4.9 Nitrogen regulation protein NR(I) compare
Pf1N1B4_1906 -2.0 -3.8 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Pf1N1B4_4487 -2.0 -2.4 FIG00955631: hypothetical protein compare
Pf1N1B4_2488 -1.9 -7.1 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf1N1B4_2448 -1.9 -5.7 GbcB Glycine betaine demethylase subunit B conserved
Pf1N1B4_1554 -1.9 -6.1 predicted FeS cluster maintenance protein (from data) compare
Pf1N1B4_4212 -1.8 -2.7 Gfa-like protein compare
Pf1N1B4_27 -1.8 -4.2 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf1N1B4_175 -1.8 -2.8 sigma-54 dependent transcriptional regulator compare
Pf1N1B4_3906 -1.8 -3.6 DNA topoisomerase I (EC 5.99.1.2) compare
Pf1N1B4_2447 -1.8 -4.2 GbcA Glycine betaine demethylase subunit A compare
Pf1N1B4_5864 -1.8 -2.3 Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF compare
Pf1N1B4_1462 -1.7 -11.2 Oligosaccharide repeat unit polymerase Wzy; O-antigen ligase compare
Pf1N1B4_2491 -1.7 -3.5 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf1N1B4_3907 -1.7 -2.9 FIG00953287: hypothetical protein compare
Pf1N1B4_619 -1.7 -2.7 Sigma-54 dependent transcriptional regulator/sensory box protein compare
Pf1N1B4_3153 -1.7 -2.0 hypothetical protein compare
Pf1N1B4_974 -1.7 -3.2 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf1N1B4_2105 -1.6 -2.4 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf1N1B4_5834 -1.6 -2.5 Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5) compare
Pf1N1B4_2011 -1.6 -6.4 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf1N1B4_2489 -1.6 -5.2 Biotin synthesis protein BioH compare
Pf1N1B4_1566 -1.6 -6.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf1N1B4_5659 -1.6 -9.4 NfuA Fe-S protein maturation compare
Pf1N1B4_2493 -1.6 -2.7 Acyl-CoA dehydrogenase (EC 1.3.8.7) compare
Pf1N1B4_2490 -1.6 -5.2 Biotin synthesis protein BioC compare
Pf1N1B4_2441 -1.6 -3.6 Electron transfer flavoprotein, alpha subunit compare
Pf1N1B4_5224 -1.5 -3.1 tRNA-Arg-CCT compare
Pf1N1B4_2442 -1.5 -2.0 Electron transfer flavoprotein, beta subunit compare
Pf1N1B4_3508 -1.5 -3.8 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf1N1B4_4481 -1.5 -2.7 Transcriptional regulator BkdR of isoleucine and valine catabolism operon compare
Pf1N1B4_7 -1.5 -4.2 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf1N1B4_3973 -1.5 -3.3 ABC-type spermidine/putrescine transport system, permease component I compare
Pf1N1B4_2352 -1.4 -4.9 Glutathione synthetase (EC 6.3.2.3) compare
Pf1N1B4_1812 -1.4 -3.0 Iron siderophore sensor protein compare
Pf1N1B4_2853 -1.4 -1.9 Pantoate--beta-alanine ligase (EC 6.3.2.1) compare
Pf1N1B4_327 -1.4 -1.7 hypothetical protein compare
Pf1N1B4_959 -1.4 -10.2 Stringent starvation protein A compare
Pf1N1B4_3520 -1.4 -3.1 Phosphohistidine phosphatase SixA compare
Pf1N1B4_883 -1.4 -2.0 Hypothetical nudix hydrolase YeaB compare
Pf1N1B4_2163 -1.4 -1.7 hypothetical protein compare
Pf1N1B4_2401 -1.4 -2.6 Lipoprotein, putative compare
Pf1N1B4_683 -1.3 -3.9 Fumarate hydratase class I, aerobic (EC 4.2.1.2) compare
Pf1N1B4_1675 -1.3 -2.4 Transcriptional regulator compare
Pf1N1B4_4671 -1.3 -2.6 Short-chain dehydrogenase/reductase SDR compare
Pf1N1B4_3504 -1.3 -3.2 Two-component sensor histidine kinase PfeS, enterobactin compare
Pf1N1B4_1057 -1.3 -2.6 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf1N1B4_2486 -1.3 -1.4 hypothetical protein compare
Pf1N1B4_3692 -1.3 -2.5 Chaperone protein HtpG compare
Pf1N1B4_1329 -1.3 -5.0 Cobalamin biosynthesis protein CobG compare
Pf1N1B4_1837 -1.3 -2.1 Osmotically inducible protein C compare
Pf1N1B4_2874 -1.3 -2.4 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf1N1B4_3108 -1.3 -4.6 S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284) compare
Pf1N1B4_2527 -1.3 -7.0 ApaG protein compare
Pf1N1B4_2381 -1.2 -8.7 Protein yceI precursor compare
Pf1N1B4_1234 -1.2 -3.4 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Pf1N1B4_2227 -1.2 -2.2 FIG019278: hypothetical protein compare
Pf1N1B4_219 -1.2 -3.5 Acyclic terpenes utilization regulator AtuR, TetR family compare
Pf1N1B4_1540 -1.2 -3.1 Type IV pilus biogenesis protein PilP compare
Pf1N1B4_2380 -1.2 -9.2 Cytochrome B561 compare
Pf1N1B4_72 -1.2 -1.9 Transcriptional regulator, LysR family compare
Pf1N1B4_5926 -1.2 -7.6 hypothetical protein compare
Pf1N1B4_866 -1.2 -1.8 Iron-sulfur cluster regulator IscR compare
Pf1N1B4_4195 -1.2 -3.3 Transcriptional regulator, TetR family compare
Pf1N1B4_2005 -1.2 -1.6 ATP-dependent DNA helicase UvrD/PcrA compare
Pf1N1B4_5446 -1.1 -2.1 hypothetical protein compare
Pf1N1B4_5924 -1.1 -5.9 hypothetical protein compare
Pf1N1B4_49 -1.1 -2.3 hypothetical protein compare
Pf1N1B4_3241 -1.1 -1.5 hypothetical protein compare
Pf1N1B4_5833 -1.1 -1.8 Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5) compare
Pf1N1B4_578 -1.1 -2.6 enoyl-CoA hydratase, R-specific compare
Pf1N1B4_5649 -1.1 -2.1 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34) compare
Pf1N1B4_3368 -1.1 -1.8 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) compare
Pf1N1B4_1052 -1.1 -2.2 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) compare
Pf1N1B4_4992 -1.1 -3.4 Dienelactone hydrolase and related enzymes compare
Pf1N1B4_1236 -1.1 -4.3 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf1N1B4_2706 -1.1 -2.3 FIG00954871: hypothetical protein compare
Pf1N1B4_3451 -1.1 -2.5 Aspartokinase (EC 2.7.2.4) compare
Pf1N1B4_5923 -1.1 -2.3 PhnB protein; putative DNA binding 3-demethylubiquinone-9 3-methyltransferase domain protein compare
Pf1N1B4_2209 -1.1 -5.8 Exopolyphosphatase (EC 3.6.1.11) compare
Pf1N1B4_5925 -1.1 -6.1 hypothetical protein compare
Pf1N1B4_2417 -1.0 -2.3 Betaine aldehyde dehydrogenase (EC 1.2.1.8) compare
Pf1N1B4_403 -1.0 -1.5 FIG00965925: hypothetical protein compare
Pf1N1B4_3279 -1.0 -1.8 putative membrane protein compare
Pf1N1B4_1402 -1.0 -2.4 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB (EC 2.1.1.-) compare
Pf1N1B4_3590 -1.0 -4.6 hypothetical protein compare
Pf1N1B4_5898 -1.0 -2.1 hypothetical protein compare
Pf1N1B4_3109 -1.0 -3.5 S-formylglutathione hydrolase (EC 3.1.2.12) compare
Pf1N1B4_1617 -1.0 -4.9 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) compare
Pf1N1B4_203 -1.0 -2.6 ABC transporter in pyoverdin gene cluster, periplasmic component compare
Pf1N1B4_1668 -1.0 -3.6 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Pf1N1B4_1683 -1.0 -2.0 Alpha-ketoglutarate-dependent taurine dioxygenase (EC 1.14.11.17) compare
Pf1N1B4_1544 -1.0 -4.6 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf1N1B4_2176 -1.0 -2.3 Frataxin homolog CyaY, facilitates iron supply for heme A synthesis or Fe-S cluster assembly compare
Pf1N1B4_3900 -1.0 -2.4 Universal stress protein family COG0589 compare
Pf1N1B4_1451 -1.0 -2.9 Ethidium bromide-methyl viologen resistance protein EmrE compare
Pf1N1B4_2912 -1.0 -1.5 GTP-binding and nucleic acid-binding protein YchF compare
Pf1N1B4_1153 -1.0 -2.7 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
Pf1N1B4_2173 -1.0 -1.7 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf1N1B4_3711 -1.0 -3.7 Cobyric acid synthase (EC 6.3.5.10) compare
Pf1N1B4_1333 -1.0 -3.2 Cobalt-precorrin-6x reductase (EC 1.3.1.54) compare
Pf1N1B4_3168 -1.0 -2.3 AmpG permease compare
Pf1N1B4_4166 -1.0 -2.0 Transcriptional regulator, LysR family compare
Pf1N1B4_3591 -1.0 -4.1 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41) compare
Pf1N1B4_2734 -1.0 -1.5 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf1N1B4_5927 -1.0 -8.0 Capsular polysaccharide biosynthesis protein compare
Pf1N1B4_5255 -1.0 -2.2 hypothetical protein compare
Pf1N1B4_3849 -1.0 -2.7 Transcriptional regulator, GntR family compare
Pf1N1B4_1653 -1.0 -4.2 Branched-chain amino acid transport protein AzlC compare
Pf1N1B4_1827 -0.9 -2.8 FIG00953482: hypothetical protein compare
Pf1N1B4_1191 -0.9 -1.5 hypothetical protein compare
Pf1N1B4_3011 -0.9 -1.7 Tyrosine recombinase XerD compare
Pf1N1B4_1328 -0.9 -2.1 Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) compare
Pf1N1B4_2469 -0.9 -2.3 Glutathione S-transferase family protein compare
Pf1N1B4_4119 -0.9 -1.8 dioxygenase compare
Pf1N1B4_4602 -0.9 -1.6 Transcriptional regulators, LysR family compare
Pf1N1B4_544 -0.9 -2.0 Small-conductance mechanosensitive channel compare
Pf1N1B4_3445 -0.9 -2.3 Succinylarginine dihydrolase (EC 3.5.3.23) compare
Pf1N1B4_5591 -0.9 -1.6 Vanillin dehydrogenase (Hydroxybenzaldehyde dehydrogenase) (EC 1.2.1.28) compare
Pf1N1B4_614 -0.9 -2.2 Arginine/ornithine antiporter ArcD compare
Pf1N1B4_5786 -0.9 -2.4 putative membrane protein compare
Pf1N1B4_5684 -0.9 -2.6 Glyceraldehyde-3-phosphate dehydrogenase, putative compare
Pf1N1B4_4897 -0.9 -1.8 Transcriptional regulator, LysR family compare
Pf1N1B4_1115 -0.9 -5.3 Dna binding response regulator PrrA (RegA) compare
Pf1N1B4_5346 -0.9 -2.3 hypothetical protein compare


Specific Phenotypes

For 10 genes in this experiment

For nitrogen source Carnitine Hydrochloride in Pseudomonas fluorescens FW300-N1B4

For nitrogen source Carnitine Hydrochloride across organisms