Experiment set4IT095 for Methanococcus maripaludis S2

Compare to:

Formate deepwell autotrophic conditions

200 most detrimental genes:

  gene name fitness t score description  
MMP_RS01370 +4.4 36.2 acetate--CoA ligase family protein compare
MMP_RS07725 +2.2 10.7 4Fe-4S dicluster domain-containing protein compare
MMP_RS03215 +2.2 17.8 MBL fold metallo-hydrolase compare
MMP_RS03385 +2.0 3.7 cation diffusion facilitator family transporter compare
MMP_RS07115 +1.5 10.9 MBL fold metallo-hydrolase compare
MMP_RS01650 +1.1 1.9 sulfurtransferase TusA family protein compare
MMP_RS03320 +1.1 3.0 metal-dependent transcriptional regulator compare
MMP_RS06555 +1.0 3.8 cupin domain-containing protein compare
MMP_RS05435 +1.0 7.2 5'/3'-nucleotidase SurE compare
MMP_RS02230 +0.9 6.3 sodium-dependent transporter compare
MMP_RS08340 +0.9 3.1 4Fe-4S binding protein compare
MMP_RS08350 +0.9 1.4 hypothetical protein compare
MMP_RS06860 +0.9 1.5 4Fe-4S binding protein compare
MMP_RS08660 +0.9 5.0 DHH family phosphoesterase compare
MMP_RS06575 +0.9 3.8 fluoride efflux transporter CrcB compare
MMP_RS05835 +0.8 1.1 secondary thiamine-phosphate synthase enzyme YjbQ compare
MMP_RS01420 +0.8 2.5 hypothetical protein compare
MMP_RS08310 +0.8 2.4 TMEM165/GDT1 family protein compare
MMP_RS08365 +0.8 2.6 energy conserving hydrogenase EhbF compare
MMP_RS07415 +0.8 3.1 molybdopterin-guanine dinucleotide biosynthesis protein MobB compare
MMP_RS05535 +0.8 3.0 hypothetical protein compare
MMP_RS00945 +0.7 1.3 PadR family transcriptional regulator compare
MMP_RS07925 +0.7 2.8 haloacid dehalogenase compare
MMP_RS02790 +0.7 1.2 class III signal peptide-containing protein compare
MMP_RS08315 +0.7 1.3 S-methyl-5-thioribose-1-phosphate isomerase compare
MMP_RS01525 +0.7 1.7 nucleoside-diphosphate kinase compare
MMP_RS08355 +0.7 3.6 Na(+)/H(+) antiporter subunit B compare
MMP_RS00675 +0.7 1.0 nitroreductase family protein compare
MMP_RS03465 +0.6 1.2 adenine phosphoribosyltransferase compare
MMP_RS07860 +0.6 0.6 hypothetical protein compare
MMP_RS03340 +0.6 0.8 ABC transporter ATP-binding protein compare
MMP_RS08615 +0.6 1.6 flagellar protein G compare
MMP_RS05950 +0.6 3.8 nickel-dependent hydrogenase large subunit compare
MMP_RS06540 +0.6 2.2 3-methyl-2-oxobutanoate dehydrogenase subunit VorB compare
MMP_RS02310 +0.6 1.4 RimK-like ATPgrasp N-terminal domain-containing protein compare
MMP_RS08360 +0.6 2.6 hypothetical protein compare
MMP_RS08345 +0.6 4.0 4Fe-4S binding protein compare
MMP_RS01275 +0.6 2.5 class III signal peptide-containing protein compare
MMP_RS03390 +0.6 3.3 malate dehydrogenase compare
MMP_RS08860 +0.6 3.1 MinD/ParA family protein compare
MMP_RS00660 +0.6 4.1 alkaline phosphatase family protein compare
MMP_RS03150 +0.6 3.8 phosphoglycerate mutase compare
MMP_RS08335 +0.6 2.1 NADH-quinone oxidoreductase subunit B family protein compare
MMP_RS07900 +0.5 1.6 YeeE/YedE family protein compare
MMP_RS08535 +0.5 3.2 bis-aminopropyl spermidine synthase family protein compare
MMP_RS06155 +0.5 2.1 DUF4186 domain-containing protein compare
MMP_RS00240 +0.5 4.4 type II secretion system F family protein compare
MMP_RS06765 +0.5 2.2 flap endonuclease-1 compare
MMP_RS01075 +0.5 0.7 hypothetical protein compare
MMP_RS06570 +0.5 1.3 DUF190 domain-containing protein compare
MMP_RS02295 +0.5 3.4 TatD family hydrolase compare
MMP_RS01570 +0.5 1.1 hypothetical protein compare
MMP_RS08500 +0.5 2.9 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT compare
MMP_RS06460 +0.5 1.9 pyrimidine dimer DNA glycosylase/endonuclease V compare
MMP_RS00760 +0.5 3.1 branched-chain-amino-acid transaminase compare
MMP_RS08280 +0.5 1.9 proteasome assembly chaperone family protein compare
MMP_RS03300 +0.5 0.6 TOBE domain-containing protein compare
MMP_RS02770 +0.5 2.1 hypothetical protein compare
MMP_RS00145 +0.5 2.7 ATP-dependent Clp protease proteolytic subunit compare
MMP_RS06335 +0.4 1.8 HAD family hydrolase compare
MMP_RS08555 +0.4 1.2 hypothetical protein compare
MMP_RS06550 +0.4 2.5 AMP-binding protein compare
MMP_RS06490 +0.4 2.4 hypothetical protein compare
MMP_RS05700 +0.4 2.9 TfuA-related McrA-glycine thioamidation protein compare
MMP_RS07620 +0.4 2.3 energy-coupling factor ABC transporter substrate-binding protein compare
MMP_RS06545 +0.4 1.5 ferredoxin family protein compare
MMP_RS07560 +0.4 2.1 prefoldin subunit alpha compare
MMP_RS07755 +0.4 0.7 DUF555 domain-containing protein compare
MMP_RS06840 +0.4 0.6 DNA-directed RNA polymerase subunit N compare
MMP_RS06675 +0.4 2.7 ADP-specific phosphofructokinase compare
MMP_RS06445 +0.4 2.4 DUF89 domain-containing protein compare
MMP_RS08075 +0.4 2.2 DUF749 domain-containing protein compare
MMP_RS05180 +0.4 3.2 Nre family DNA repair protein compare
MMP_RS06000 +0.4 1.6 divalent-cation tolerance protein CutA compare
MMP_RS08775 +0.4 2.0 methanogenesis marker 9 domain-containing protein compare
MMP_RS00825 +0.4 2.0 fumarylacetoacetate hydrolase family protein compare
MMP_RS03245 +0.4 2.3 DNA repair and recombination protein RadB compare
MMP_RS06485 +0.4 0.6 zinc ribbon domain-containing protein compare
MMP_RS01580 +0.4 2.3 PQQ-binding-like beta-propeller repeat protein compare
MMP_RS00955 +0.4 2.3 coenzyme gamma-F420-2:alpha-L-glutamate ligase compare
MMP_RS07805 +0.4 1.9 ABC transporter permease compare
MMP_RS07435 +0.4 1.0 GMP synthase subunit A compare
MMP_RS07890 +0.4 1.2 OB-fold nucleic acid binding domain-containing protein compare
MMP_RS05830 +0.4 1.2 peptidyl-prolyl cis-trans isomerase compare
MMP_RS00905 +0.4 1.2 phenylacetate--CoA ligase compare
MMP_RS01150 +0.4 1.4 aldo/keto reductase compare
MMP_RS00535 +0.4 0.9 TIGR00375 family protein compare
MMP_RS06275 +0.4 2.6 ATP-dependent DNA helicase compare
MMP_RS08275 +0.4 2.2 hypothetical protein compare
MMP_RS07180 +0.4 2.4 DEAD/DEAH box helicase compare
MMP_RS07895 +0.3 1.7 cytochrome c compare
MMP_RS01160 +0.3 2.1 DMT family transporter compare
MMP_RS01090 +0.3 2.5 ABC transporter substrate-binding protein compare
MMP_RS00705 +0.3 0.9 hypothetical protein compare
MMP_RS05455 +0.3 2.0 DUF167 domain-containing protein compare
MMP_RS01155 +0.3 2.2 XRE family transcriptional regulator compare
MMP_RS08620 +0.3 1.9 flagellar accessory protein FlaH compare
MMP_RS05560 +0.3 1.5 deoxyuridine 5'-triphosphate nucleotidohydrolase compare
MMP_RS04730 +0.3 2.2 flavodoxin family protein compare
MMP_RS06515 +0.3 0.9 UPF0489 family protein compare
MMP_RS01260 +0.3 0.9 HDIG domain-containing protein compare
MMP_RS01965 +0.3 1.2 DUF1616 domain-containing protein compare
MMP_RS07155 +0.3 1.8 MFS transporter compare
MMP_RS07765 +0.3 1.9 sodium:alanine symporter family protein compare
MMP_RS06435 +0.3 1.7 CBS domain-containing protein compare
MMP_RS03910 +0.3 1.0 hypothetical protein compare
MMP_RS01620 +0.3 1.3 hypothetical protein compare
MMP_RS04530 +0.3 1.8 ABC transporter permease compare
MMP_RS05975 +0.3 0.7 hypothetical protein compare
MMP_RS08085 +0.3 2.5 hypothetical protein compare
MMP_RS08980 +0.3 1.1 hypothetical protein compare
MMP_RS07815 +0.3 0.6 DUF2120 domain-containing protein compare
MMP_RS05940 +0.3 1.7 corrinoid protein compare
MMP_RS08670 +0.3 2.1 metallophosphoesterase compare
MMP_RS06875 +0.3 1.7 FAD-dependent oxidoreductase compare
MMP_RS05450 +0.3 1.3 CoB--CoM heterodisulfide reductase subunit C compare
MMP_RS00710 +0.3 1.2 hypothetical protein compare
MMP_RS04480 +0.3 2.5 lysine 2 3-aminomutase compare
MMP_RS06325 +0.3 0.7 hypothetical protein compare
MMP_RS02590 +0.3 2.2 low molecular weight phosphatase family protein compare
MMP_RS06650 +0.3 2.0 glycoside hydrolase family 57 protein compare
MMP_RS09050 +0.3 0.9 CAP domain-containing protein compare
MMP_RS01115 +0.3 1.7 molybdopterin molybdotransferase MoeA compare
MMP_RS03395 +0.3 1.6 hypothetical protein compare
MMP_RS06060 +0.3 1.4 hypothetical protein compare
MMP_RS04625 +0.3 1.9 DEAD/DEAH box helicase compare
MMP_RS04520 +0.3 1.5 nucleoside deaminase compare
MMP_RS08260 +0.3 1.6 DUF99 family protein compare
MMP_RS03440 +0.3 0.5 MoaD/ThiS family protein compare
MMP_RS00540 +0.3 2.0 PLP-dependent aminotransferase family protein compare
MMP_RS01745 +0.3 1.6 AMP phosphorylase compare
MMP_RS02370 +0.3 1.2 NifB/NifX family molybdenum-iron cluster-binding protein compare
MMP_RS05945 +0.3 0.9 CBS domain-containing protein compare
MMP_RS05995 +0.3 2.1 FprA family A-type flavoprotein compare
MMP_RS01290 +0.3 2.3 class III signal peptide-containing protein compare
MMP_RS00185 +0.3 2.3 potassium channel protein compare
MMP_RS07680 +0.3 1.0 DUF366 family protein compare
MMP_RS07855 +0.3 1.9 class I SAM-dependent methyltransferase compare
MMP_RS07910 +0.3 1.5 NAD(P)H-hydrate dehydratase compare
MMP_RS05900 +0.3 2.2 tetratricopeptide repeat protein compare
MMP_RS02845 +0.3 2.4 hypothetical protein compare
MMP_RS05660 +0.3 1.5 phosphate ABC transporter substrate-binding protein compare
MMP_RS01435 +0.3 1.1 DMT family transporter compare
MMP_RS07750 +0.3 1.1 DUF357 domain-containing protein compare
MMP_RS08485 +0.3 1.6 tungstate ABC transporter substrate-binding protein WtpA compare
MMP_RS02495 +0.3 1.0 hypothetical protein compare
MMP_RS01485 +0.3 1.9 right-handed parallel beta-helix repeat-containing protein compare
MMP_RS09030 +0.3 1.4 hypothetical protein compare
MMP_RS07885 +0.3 0.8 tripartite tricarboxylate transporter permease compare
MMP_RS01145 +0.3 1.9 ABC transporter ATP-binding protein compare
MMP_RS07835 +0.3 1.1 TldD/PmbA family protein compare
MMP_RS08230 +0.3 1.7 50S ribosomal protein L11 methyltransferase compare
MMP_RS00140 +0.3 1.7 DUF192 domain-containing protein compare
MMP_RS06610 +0.3 0.8 DUF2334 domain-containing protein compare
MMP_RS04030 +0.3 1.2 hypothetical protein compare
MMP_RS06225 +0.3 1.3 DNA double-strand break repair nuclease NurA compare
MMP_RS05910 +0.2 0.8 cell division ATPase MinD compare
MMP_RS08405 +0.2 1.7 MFS transporter compare
MMP_RS01110 +0.2 0.7 FmdE family protein compare
MMP_RS08665 +0.2 1.9 hypothetical protein compare
MMP_RS00530 +0.2 1.5 tRNA pseudouridine(54/55) synthase Pus10 compare
MMP_RS00245 +0.2 2.2 type II secretion system F family protein compare
MMP_RS08265 +0.2 1.0 rubrerythrin compare
MMP_RS07615 +0.2 1.2 energy-coupling factor ABC transporter permease compare
MMP_RS01785 +0.2 1.3 hypothetical protein compare
MMP_RS08835 +0.2 1.2 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein compare
MMP_RS05175 +0.2 1.3 hypothetical protein compare
MMP_RS05665 +0.2 0.9 phosphate ABC transporter permease subunit PstC compare
MMP_RS02690 +0.2 1.3 FmdE family protein compare
MMP_RS01775 +0.2 0.6 TIGR00297 family protein compare
MMP_RS02410 +0.2 0.7 ABC transporter substrate-binding protein compare
MMP_RS04020 +0.2 1.6 hypothetical protein compare
MMP_RS06495 +0.2 1.0 YkgJ family cysteine cluster protein compare
MMP_RS00085 +0.2 1.5 DNA cytosine methyltransferase compare
MMP_RS04150 +0.2 1.4 MFS transporter compare
MMP_RS01140 +0.2 1.0 molybdate ABC transporter permease subunit compare
MMP_RS06655 +0.2 1.3 glycoside hydrolase family 15 protein compare
MMP_RS06140 +0.2 0.7 radical SAM protein compare
MMP_RS01285 +0.2 1.5 hypothetical protein compare
MMP_RS08070 +0.2 0.9 DUF2096 domain-containing protein compare
MMP_RS00975 +0.2 1.6 HD domain-containing protein compare
MMP_RS04485 +0.2 1.5 putative beta-lysine N-acetyltransferase compare
MMP_RS08580 +0.2 0.9 flagellin compare
MMP_RS01655 +0.2 0.8 DsrE family protein compare
MMP_RS01130 +0.2 1.1 flavoprotein compare
MMP_RS08945 +0.2 1.5 hypothetical protein compare
MMP_RS05820 +0.2 1.2 RNA-binding transcriptional accessory protein compare
MMP_RS05150 +0.2 1.3 hypothetical protein compare
MMP_RS01240 +0.2 0.2 7-cyano-7-deazaguanine synthase QueC compare
MMP_RS07795 +0.2 1.5 site-2 protease family protein compare
MMP_RS02315 +0.2 0.7 RimK family alpha-L-glutamate ligase compare
MMP_RS03335 +0.2 1.0 ABC transporter permease compare
MMP_RS08675 +0.2 0.7 class III signal peptide-containing protein compare
MMP_RS07905 +0.2 1.2 DUF3343 domain-containing protein compare
MMP_RS00665 +0.2 0.7 hypothetical protein compare
MMP_RS01605 +0.2 1.4 hypothetical protein compare
MMP_RS06430 +0.2 0.8 6-carboxytetrahydropterin synthase QueD compare
MMP_RS02520 +0.2 1.6 hypothetical protein compare
MMP_RS01280 +0.2 1.7 DUF515 domain-containing protein compare
MMP_RS02560 +0.2 1.2 DUF2283 domain-containing protein compare


Specific Phenotypes

For 2 genes in this experiment