Experiment set4IT095 for Shewanella sp. ANA-3
outer cut, LB soft agar motility assay
Group: motilityMedia: LB + Agar (3 g/L)
Culturing: ANA3_ML1, Agar plate, Aerobic, at 30 (C), shaken=0 rpm, (Solid)
By: Mark on 1/14/2015
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride
Specific Phenotypes
For 9 genes in this experiment
For motility Agar in Shewanella sp. ANA-3
For motility Agar across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Bacterial hemoglobins | 2 |
| Bacterial Chemotaxis | 1 |
| N-linked Glycosylation in Bacteria | 1 |
| Type III secretion system orphans | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Porphyrin and chlorophyll metabolism
- Fatty acid biosynthesis
- Tyrosine metabolism
- Benzoate degradation via hydroxylation
- Phenylalanine, tyrosine and tryptophan biosynthesis
- Nucleotide sugars metabolism
- 1- and 2-Methylnaphthalene degradation
- Benzoate degradation via CoA ligation
- Butanoate metabolism
- Limonene and pinene degradation
- Biosynthesis of unsaturated fatty acids
- Biosynthesis of type II polyketide backbone
MetaCyc Pathways
Pathways that contain genes with specific phenotypes: