Experiment set4IT094 for Methanococcus maripaludis S2

Compare to:

Formate deepwell autotrophic conditions

200 most important genes:

  gene name fitness t score description  
MMP_RS05065 -9.9 -5.1 CooT family nickel-binding protein compare
MMP_RS05080 -9.3 -14.8 acetyl-CoA decarbonylase/synthase complex subunit delta compare
MMP_RS03015 -9.3 -9.0 GTP 3' 8-cyclase MoaA compare
MMP_RS05515 -9.0 -7.6 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS06350 -9.0 -6.5 HesA/MoeB/ThiF family protein compare
MMP_RS05055 -8.8 -17.0 DUF166 domain-containing protein compare
MMP_RS05070 -8.7 -11.0 4Fe-4S dicluster domain-containing protein compare
MMP_RS03450 -8.7 -3.5 glycine synthesis protein GlyXS (from data) compare
MMP_RS01175 -8.7 -4.9 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS05060 -8.7 -11.8 AAA family ATPase compare
MMP_RS05100 -8.6 -23.6 CO dehydrogenase/acetyl-CoA synthase complex subunit alpha compare
MMP_RS01500 -8.5 -3.4 CBS domain-containing protein compare
MMP_RS05085 -8.5 -10.8 AAA family ATPase compare
MMP_RS04615 -8.4 -4.8 PDGLE domain-containing protein compare
MMP_RS05090 -8.4 -12.5 CO dehydrogenase/CO-methylating acetyl-CoA synthase complex subunit beta compare
MMP_RS05095 -8.4 -6.9 CO dehydrogenase/acetyl-CoA synthase complex subunit epsilon compare
MMP_RS04605 -8.3 -5.3 cobalt ECF transporter T component CbiQ compare
MMP_RS06715 -8.3 -18.5 cache domain-containing protein compare
MMP_RS04620 -8.3 -14.9 cobalt transporter CbiM compare
MMP_RS06975 -8.3 -3.3 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMP_RS06895 -8.1 -3.2 selenocysteine-specific translation elongation factor compare
MMP_RS06285 -7.9 -3.7 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS06680 -7.9 -15.2 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS05500 -7.9 -10.6 2-isopropylmalate synthase compare
MMP_RS06705 -7.7 -8.3 formate/nitrite transporter family protein compare
MMP_RS07845 -7.7 -3.8 LL-diaminopimelate aminotransferase compare
MMP_RS06700 -7.6 -16.0 hypothetical protein compare
MMP_RS07345 -7.5 -7.3 glycine synthesis protein GlyXL (from data) compare
MMP_RS05075 -7.5 -16.4 acetyl-CoA decarbonylase/synthase complex subunit gamma compare
MMP_RS07445 -7.5 -11.0 helix-turn-helix domain-containing protein compare
MMP_RS03640 -7.5 -4.9 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS06270 -7.4 -8.8 TIGR00300 family protein compare
MMP_RS06400 -7.3 -3.0 4Fe-4S binding protein compare
MMP_RS06355 -7.3 -3.8 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS06685 -7.3 -17.0 formate dehydrogenase H subunit alpha selenocysteine-containing compare
MMP_RS06720 -7.2 -6.4 response regulator transcription factor compare
MMP_RS06730 -7.1 -3.3 phosphopantothenate/pantothenate synthetase compare
MMP_RS07365 -7.0 -12.4 2-phosphoglycerate kinase compare
MMP_RS06625 -7.0 -3.3 DNA primase compare
MMP_RS00295 -6.5 -2.1 gamma carbonic anhydrase family protein compare
MMP_RS01545 -6.4 -1.5 CBS domain-containing protein compare
MMP_RS03435 -6.4 -2.9 ketol-acid reductoisomerase compare
MMP_RS07380 -6.4 -3.3 transcription elongation factor Spt5 compare
MMP_RS06345 -6.2 -12.2 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMP_RS01455 -6.2 -7.9 nickel pincer cofactor biosynthesis protein LarC compare
MMP_RS05930 -6.2 -4.0 3-isopropylmalate dehydratase large subunit compare
MMP_RS01380 -6.1 -7.9 PHP domain-containing protein compare
MMP_RS06375 -6.1 -7.5 ATP-dependent sacrificial sulfur transferase LarE compare
MMP_RS01020 -6.1 -1.4 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS07730 -6.0 -3.1 pyruvate synthase subunit beta compare
MMP_RS08240 -5.9 -9.0 methanogenesis marker 16 metalloprotein compare
MMP_RS03315 -5.9 -2.3 ferrous iron transport protein A compare
MMP_RS08645 -5.8 -10.6 UPF0179 family protein compare
MMP_RS05925 -5.7 -5.6 small nuclear ribonucleoprotein compare
MMP_RS04215 -5.7 -10.1 nickel pincer cofactor biosynthesis protein LarB compare
MMP_RS03035 -5.6 -5.4 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS02145 -5.6 -9.3 winged helix-turn-helix transcriptional regulator compare
MMP_RS08745 -5.5 -10.6 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS00305 -5.5 -2.8 phosphoribosyl-ATP diphosphatase compare
MMP_RS03600 -5.4 -3.8 triose-phosphate isomerase compare
MMP_RS06340 -5.4 -7.8 phosphoadenosine phosphosulfate reductase family protein compare
MMP_RS04780 -5.3 -4.5 ribonuclease P compare
MMP_RS08210 -5.3 -3.8 phosphatidylglycerophosphatase A compare
MMP_RS01005 -5.2 -1.7 riboflavin synthase compare
MMP_RS07720 -5.0 -12.9 4Fe-4S binding protein compare
MMP_RS01755 -4.9 -1.6 DUF2097 domain-containing protein compare
MMP_RS07005 -4.9 -1.1 4Fe-4S binding protein compare
MMP_RS06930 -4.9 -18.0 MBL fold metallo-hydrolase compare
MMP_RS07605 -4.9 -4.0 diadenylate cyclase compare
MMP_RS00300 -4.8 -1.1 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS06120 -4.8 -3.3 UPF0147 family protein compare
MMP_RS08460 -4.8 -3.9 proteasome-activating nucleotidase compare
MMP_RS03445 -4.8 -1.6 methanogenesis marker 17 protein compare
MMP_RS00290 -4.8 -8.9 hypothetical protein compare
MMP_RS08095 -4.8 -9.2 dethiobiotin synthase compare
MMP_RS00455 -4.7 -16.2 orotate phosphoribosyltransferase-like protein compare
MMP_RS07635 -4.7 -10.7 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS07645 -4.7 -8.0 aldehyde dehydrogenase family protein compare
MMP_RS08105 -4.7 -9.1 6-carboxyhexanoate--CoA ligase compare
MMP_RS07185 -4.7 -13.3 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS01830 -4.7 -2.6 tRNA-Val compare
MMP_RS06295 -4.6 -9.2 methanogenesis marker 14 protein compare
MMP_RS06630 -4.6 -1.5 UPF0058 family protein compare
MMP_RS08720 -4.6 -2.9 4Fe-4S binding protein compare
MMP_RS06370 -4.5 -8.8 biotin synthase BioB compare
MMP_RS06315 -4.5 -1.5 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMP_RS04500 -4.5 -19.4 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMP_RS08100 -4.4 -8.2 8-amino-7-oxononanoate synthase compare
MMP_RS07525 -4.4 -7.0 4Fe-4S binding protein compare
MMP_RS05265 -4.4 -3.5 2-isopropylmalate synthase compare
MMP_RS01700 -4.3 -1.4 dihydroxy-acid dehydratase compare
MMP_RS08820 -4.3 -7.2 hypothetical protein compare
MMP_RS01985 -4.3 -10.8 F420-dependent methylenetetrahydromethanopterin dehydrogenase compare
MMP_RS05555 -4.3 -2.0 DUF4040 domain-containing protein compare
MMP_RS08715 -4.2 -3.1 formylmethanofuran dehydrogenase subunit B compare
MMP_RS01475 -4.2 -6.1 phosphosulfolactate synthase compare
MMP_RS04585 -4.1 -11.7 AIR synthase related protein compare
MMP_RS00515 -4.1 -1.3 DUF655 domain-containing protein compare
MMP_RS04890 -4.0 -1.3 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS01225 -4.0 -7.1 DUF5379 domain-containing protein compare
MMP_RS05850 -3.9 -7.7 Ldh family oxidoreductase compare
MMP_RS08790 -3.9 -3.4 translation initiation factor IF-2 subunit alpha compare
MMP_RS02195 -3.9 -5.2 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS09020 -3.8 -3.0 hypothetical protein compare
MMP_RS07735 -3.8 -1.2 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha compare
MMP_RS01925 -3.8 -12.4 DUF1616 domain-containing protein compare
MMP_RS05765 -3.8 -7.8 M42 family metallopeptidase compare
MMP_RS03960 -3.8 -1.5 hypothetical protein compare
MMP_RS02280 -3.8 -1.5 DUF211 domain-containing protein compare
MMP_RS06230 -3.8 -3.7 helix-turn-helix domain-containing protein compare
MMP_RS01610 -3.7 -4.7 hypothetical protein compare
MMP_RS05440 -3.7 -14.5 winged helix-turn-helix transcriptional regulator compare
MMP_RS00685 -3.7 -6.6 2-phospho-L-lactate guanylyltransferase compare
MMP_RS01800 -3.7 -6.3 TIGR00303 family protein compare
MMP_RS01325 -3.6 -3.5 dihydroneopterin aldolase family protein compare
MMP_RS07195 -3.6 -14.4 M20 family metallo-hydrolase compare
MMP_RS01980 -3.5 -18.6 trimeric intracellular cation channel family protein compare
MMP_RS04685 -3.5 -5.2 DUF126 domain-containing protein compare
MMP_RS02355 -3.5 -4.8 30S ribosomal protein S27ae compare
MMP_RS07575 -3.5 -7.6 RNA ligase partner protein compare
MMP_RS05425 -3.5 -6.1 monovalent cation/H+ antiporter complex subunit F compare
MMP_RS05550 -3.5 -1.1 cation:proton antiporter compare
MMP_RS04710 -3.4 -2.4 hypothetical protein compare
MMP_RS07630 -3.4 -2.0 ATP-binding cassette domain-containing protein compare
MMP_RS01960 -3.3 -1.1 hypothetical protein compare
MMP_RS03420 -3.2 -2.6 acetolactate synthase small subunit compare
MMP_RS08635 -3.2 -3.2 UbiA family prenyltransferase compare
MMP_RS01955 -3.2 -5.0 hypothetical protein compare
MMP_RS00895 -3.2 -5.6 hypothetical protein compare
MMP_RS07390 -3.1 -3.5 cell division protein FtsZ compare
MMP_RS03025 -3.1 -8.0 molybdenum cofactor guanylyltransferase compare
MMP_RS08300 -3.1 -1.6 metal-sulfur cluster assembly factor compare
MMP_RS02345 -3.1 -5.8 GTP-dependent dephospho-CoA kinase family protein compare
MMP_RS08330 -3.1 -6.0 NADH-quinone oxidoreductase subunit H compare
MMP_RS00115 -3.1 -17.8 radical SAM protein compare
MMP_RS01895 -3.1 -15.2 flippase compare
MMP_RS00985 -3.0 -6.8 CDC48 family AAA ATPase compare
MMP_RS05505 -3.0 -12.7 class IV adenylate cyclase compare
MMP_RS05285 -3.0 -14.6 MMPL family transporter compare
MMP_RS01265 -3.0 -4.1 hypothetical protein compare
MMP_RS07710 -3.0 -12.6 cell division protein FtsZ compare
MMP_RS03580 -3.0 -4.3 signal recognition particle-docking protein FtsY compare
MMP_RS03700 -3.0 -10.4 sodium:proton antiporter compare
MMP_RS02340 -3.0 -2.4 DNA-directed RNA polymerase subunit E'' compare
MMP_RS08165 -2.9 -3.8 phosphoglycerate dehydrogenase compare
MMP_RS06020 -2.9 -6.4 archaeoflavoprotein AfpA compare
MMP_RS02240 -2.9 -5.3 methanogenesis marker 7 protein compare
MMP_RS03110 -2.9 -8.0 glycosyltransferase family 2 protein compare
MMP_RS05280 -2.9 -13.4 COG1361 S-layer family protein compare
MMP_RS05845 -2.9 -3.5 tRNA-intron lyase compare
MMP_RS04790 -2.8 -15.5 4-hydroxy-tetrahydrodipicolinate reductase compare
MMP_RS08650 -2.8 -4.4 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMP_RS01900 -2.8 -15.5 hypothetical protein compare
MMP_RS01385 -2.8 -1.1 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS03475 -2.8 -1.1 hypothetical protein compare
MMP_RS02170 -2.8 -6.5 CBS domain-containing protein compare
MMP_RS01905 -2.8 -14.7 glycosyltransferase compare
MMP_RS07555 -2.8 -1.2 monovalent cation/H+ antiporter subunit E compare
MMP_RS01915 -2.7 -14.6 DUF354 domain-containing protein compare
MMP_RS04870 -2.7 -5.3 TIGR02253 family HAD-type hydrolase compare
MMP_RS02900 -2.7 -1.2 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS07200 -2.6 -8.6 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS03400 -2.6 -5.0 archease compare
MMP_RS06215 -2.6 -5.1 30S ribosomal protein S6e compare
MMP_RS02875 -2.6 -11.3 chorismate pyruvate-lyase family protein compare
MMP_RS05245 -2.6 -12.9 archaeosine biosynthesis radical SAM protein RaSEA compare
MMP_RS04090 -2.6 -4.0 hypothetical protein compare
MMP_RS07600 -2.6 -3.3 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS06105 -2.5 -10.0 hydrogenase maturation peptidase HycI compare
MMP_RS01220 -2.5 -7.9 hypothetical protein compare
MMP_RS01910 -2.5 -11.9 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMP_RS08435 -2.5 -2.6 Era-like GTP-binding protein compare
MMP_RS05430 -2.5 -4.8 TIGR00288 family NYN domain-containing protein compare
MMP_RS07580 -2.5 -4.2 DUF356 domain-containing protein compare
MMP_RS07545 -2.5 -1.6 HTH domain-containing protein compare
MMP_RS06175 -2.5 -9.3 winged helix-turn-helix transcriptional regulator compare
MMP_RS03155 -2.4 -10.4 precorrin-6A reductase compare
MMP_RS07685 -2.4 -8.4 TIGR01212 family radical SAM protein compare
MMP_RS06925 -2.4 -3.3 ribonuclease VapC4 compare
MMP_RS02800 -2.4 -5.0 nucleotidyltransferase domain-containing protein compare
MMP_RS08440 -2.4 -3.3 cell division protein SepF compare
MMP_RS00620 -2.4 -12.9 4Fe-4S binding protein compare
MMP_RS03145 -2.3 -7.6 fibrillarin-like rRNA/tRNA 2'-O-methyltransferase compare
MMP_RS01880 -2.3 -9.3 DegT/DnrJ/EryC1/StrS family aminotransferase compare
MMP_RS00695 -2.3 -1.4 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS03140 -2.3 -12.5 hypothetical protein compare
MMP_RS02135 -2.3 -5.1 DUF5612 domain-containing protein compare
MMP_RS01365 -2.2 -2.6 archaeal proteasome endopeptidase complex subunit alpha compare
MMP_RS07075 -2.2 -4.6 phosphomannomutase/phosphoglucomutase compare
MMP_RS00320 -2.2 -2.4 class I SAM-dependent methyltransferase compare
MMP_RS08445 -2.2 -5.5 DUF2099 family protein compare
MMP_RS06130 -2.1 -5.3 peptidylprolyl isomerase compare
MMP_RS00130 -2.1 -2.0 nickel-responsive transcriptional regulator NikR compare
MMP_RS05540 -2.1 -3.7 hypothetical protein compare
MMP_RS05345 -2.1 -7.6 hypothetical protein compare
MMP_RS07420 -2.0 -3.6 metalloregulator ArsR/SmtB family transcription factor compare
MMP_RS06980 -2.0 -7.7 tRNA 2-thiocytidine biosynthesis TtcA family protein compare
MMP_RS04775 -2.0 -4.6 adenosylhomocysteinase compare
MMP_RS07875 -2.0 -6.5 hypothetical protein compare
MMP_RS05920 -2.0 -1.0 50S ribosomal protein L37e compare


Specific Phenotypes

For 1 genes in this experiment