Experiment set4IT093 for Methanococcus maripaludis S2

Compare to:

Formate deepwell acetate and casamino acid FREE

200 most important genes:

  gene name fitness t score description  
MMP_RS06355 -9.1 -4.1 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS05100 -9.1 -22.0 CO dehydrogenase/acetyl-CoA synthase complex subunit alpha compare
MMP_RS05080 -8.9 -15.2 acetyl-CoA decarbonylase/synthase complex subunit delta compare
MMP_RS04620 -8.8 -13.5 cobalt transporter CbiM compare
MMP_RS03450 -8.8 -4.0 glycine synthesis protein GlyXS (from data) compare
MMP_RS01500 -8.5 -3.8 CBS domain-containing protein compare
MMP_RS05500 -8.5 -11.0 2-isopropylmalate synthase compare
MMP_RS05085 -8.5 -11.4 AAA family ATPase compare
MMP_RS05055 -8.5 -18.8 DUF166 domain-containing protein compare
MMP_RS06680 -8.4 -15.2 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS06720 -8.3 -9.7 response regulator transcription factor compare
MMP_RS05065 -8.1 -6.5 CooT family nickel-binding protein compare
MMP_RS06700 -8.0 -16.3 hypothetical protein compare
MMP_RS01175 -8.0 -6.8 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS05060 -8.0 -10.6 AAA family ATPase compare
MMP_RS06705 -7.9 -10.9 formate/nitrite transporter family protein compare
MMP_RS07845 -7.7 -4.2 LL-diaminopimelate aminotransferase compare
MMP_RS05095 -7.7 -7.7 CO dehydrogenase/acetyl-CoA synthase complex subunit epsilon compare
MMP_RS05090 -7.7 -12.4 CO dehydrogenase/CO-methylating acetyl-CoA synthase complex subunit beta compare
MMP_RS05075 -7.6 -17.6 acetyl-CoA decarbonylase/synthase complex subunit gamma compare
MMP_RS04605 -7.4 -6.0 cobalt ECF transporter T component CbiQ compare
MMP_RS05070 -7.4 -10.0 4Fe-4S dicluster domain-containing protein compare
MMP_RS04615 -7.4 -5.4 PDGLE domain-containing protein compare
MMP_RS06270 -7.3 -8.7 TIGR00300 family protein compare
MMP_RS06685 -7.2 -16.6 formate dehydrogenase H subunit alpha selenocysteine-containing compare
MMP_RS07345 -7.2 -8.6 glycine synthesis protein GlyXL (from data) compare
MMP_RS06715 -7.2 -18.1 cache domain-containing protein compare
MMP_RS07365 -7.0 -12.2 2-phosphoglycerate kinase compare
MMP_RS01455 -6.5 -9.4 nickel pincer cofactor biosynthesis protein LarC compare
MMP_RS01545 -6.5 -1.7 CBS domain-containing protein compare
MMP_RS03435 -6.4 -3.3 ketol-acid reductoisomerase compare
MMP_RS06350 -6.4 -8.5 HesA/MoeB/ThiF family protein compare
MMP_RS06345 -6.3 -12.7 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMP_RS05515 -6.3 -8.0 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS03035 -6.3 -6.0 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS03640 -6.3 -7.1 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS03015 -6.2 -10.8 GTP 3' 8-cyclase MoaA compare
MMP_RS07630 -6.2 -2.7 ATP-binding cassette domain-containing protein compare
MMP_RS06895 -6.2 -3.6 selenocysteine-specific translation elongation factor compare
MMP_RS07445 -6.1 -6.9 helix-turn-helix domain-containing protein compare
MMP_RS07730 -6.1 -3.5 pyruvate synthase subunit beta compare
MMP_RS01020 -6.1 -1.6 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS06730 -6.0 -3.8 phosphopantothenate/pantothenate synthetase compare
MMP_RS03315 -5.9 -2.7 ferrous iron transport protein A compare
MMP_RS06400 -5.9 -3.2 4Fe-4S binding protein compare
MMP_RS01380 -5.8 -8.3 PHP domain-containing protein compare
MMP_RS04215 -5.8 -11.3 nickel pincer cofactor biosynthesis protein LarB compare
MMP_RS03960 -5.8 -1.5 hypothetical protein compare
MMP_RS08745 -5.8 -10.4 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS06120 -5.7 -3.8 UPF0147 family protein compare
MMP_RS06375 -5.5 -8.9 ATP-dependent sacrificial sulfur transferase LarE compare
MMP_RS07635 -5.3 -10.5 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS02195 -5.3 -6.7 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS04780 -5.2 -6.2 ribonuclease P compare
MMP_RS05925 -5.2 -5.5 small nuclear ribonucleoprotein compare
MMP_RS07555 -5.2 -1.3 monovalent cation/H+ antiporter subunit E compare
MMP_RS05265 -5.1 -3.8 2-isopropylmalate synthase compare
MMP_RS08790 -5.0 -3.4 translation initiation factor IF-2 subunit alpha compare
MMP_RS05930 -5.0 -4.4 3-isopropylmalate dehydratase large subunit compare
MMP_RS00300 -4.9 -1.3 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS06230 -4.8 -5.2 helix-turn-helix domain-containing protein compare
MMP_RS05550 -4.8 -1.3 cation:proton antiporter compare
MMP_RS03475 -4.8 -1.2 hypothetical protein compare
MMP_RS07185 -4.7 -15.2 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS08300 -4.7 -2.1 metal-sulfur cluster assembly factor compare
MMP_RS01325 -4.6 -3.5 dihydroneopterin aldolase family protein compare
MMP_RS06315 -4.6 -1.7 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMP_RS02145 -4.5 -13.0 winged helix-turn-helix transcriptional regulator compare
MMP_RS08435 -4.5 -3.2 Era-like GTP-binding protein compare
MMP_RS08635 -4.5 -3.9 UbiA family prenyltransferase compare
MMP_RS06975 -4.5 -3.3 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMP_RS01800 -4.4 -6.8 TIGR00303 family protein compare
MMP_RS08165 -4.4 -4.9 phosphoglycerate dehydrogenase compare
MMP_RS01700 -4.4 -1.6 dihydroxy-acid dehydratase compare
MMP_RS07380 -4.4 -3.8 transcription elongation factor Spt5 compare
MMP_RS04585 -4.4 -10.2 AIR synthase related protein compare
MMP_RS07720 -4.4 -16.8 4Fe-4S binding protein compare
MMP_RS06340 -4.3 -12.8 phosphoadenosine phosphosulfate reductase family protein compare
MMP_RS00295 -4.3 -4.2 gamma carbonic anhydrase family protein compare
MMP_RS08715 -4.3 -3.6 formylmethanofuran dehydrogenase subunit B compare
MMP_RS07575 -4.3 -8.3 RNA ligase partner protein compare
MMP_RS06925 -4.2 -4.1 ribonuclease VapC4 compare
MMP_RS07525 -4.2 -7.5 4Fe-4S binding protein compare
MMP_RS06285 -4.1 -3.3 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS01005 -4.1 -2.6 riboflavin synthase compare
MMP_RS07605 -4.1 -3.7 diadenylate cyclase compare
MMP_RS08240 -4.0 -13.2 methanogenesis marker 16 metalloprotein compare
MMP_RS00455 -4.0 -14.4 orotate phosphoribosyltransferase-like protein compare
MMP_RS08645 -4.0 -10.7 UPF0179 family protein compare
MMP_RS00685 -3.9 -5.4 2-phospho-L-lactate guanylyltransferase compare
MMP_RS01225 -3.9 -9.5 DUF5379 domain-containing protein compare
MMP_RS01985 -3.9 -7.5 F420-dependent methylenetetrahydromethanopterin dehydrogenase compare
MMP_RS07390 -3.9 -4.4 cell division protein FtsZ compare
MMP_RS07735 -3.9 -1.4 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha compare
MMP_RS02355 -3.9 -5.0 30S ribosomal protein S27ae compare
MMP_RS06630 -3.9 -2.0 UPF0058 family protein compare
MMP_RS02280 -3.8 -1.7 DUF211 domain-containing protein compare
MMP_RS08460 -3.8 -3.7 proteasome-activating nucleotidase compare
MMP_RS02900 -3.8 -1.4 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS08820 -3.8 -10.4 hypothetical protein compare
MMP_RS00305 -3.7 -3.0 phosphoribosyl-ATP diphosphatase compare
MMP_RS08440 -3.7 -5.6 cell division protein SepF compare
MMP_RS06295 -3.7 -8.3 methanogenesis marker 14 protein compare
MMP_RS02340 -3.7 -2.7 DNA-directed RNA polymerase subunit E'' compare
MMP_RS07005 -3.7 -1.3 4Fe-4S binding protein compare
MMP_RS07580 -3.7 -6.3 DUF356 domain-containing protein compare
MMP_RS05850 -3.6 -8.7 Ldh family oxidoreductase compare
MMP_RS01265 -3.6 -4.3 hypothetical protein compare
MMP_RS04500 -3.6 -20.8 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMP_RS01475 -3.6 -6.9 phosphosulfolactate synthase compare
MMP_RS06020 -3.6 -7.7 archaeoflavoprotein AfpA compare
MMP_RS01865 -3.6 -3.2 GPR1/FUN34/YaaH family transporter compare
MMP_RS09020 -3.5 -2.7 hypothetical protein compare
MMP_RS01610 -3.4 -3.1 hypothetical protein compare
MMP_RS06625 -3.4 -3.3 DNA primase compare
MMP_RS05875 -3.4 -5.4 hydroxyethylthiazole kinase compare
MMP_RS03600 -3.4 -4.3 triose-phosphate isomerase compare
MMP_RS00515 -3.4 -1.7 DUF655 domain-containing protein compare
MMP_RS01955 -3.3 -4.7 hypothetical protein compare
MMP_RS08095 -3.3 -10.0 dethiobiotin synthase compare
MMP_RS04890 -3.3 -1.7 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS08100 -3.3 -9.8 8-amino-7-oxononanoate synthase compare
MMP_RS06370 -3.3 -6.8 biotin synthase BioB compare
MMP_RS00290 -3.2 -10.7 hypothetical protein compare
MMP_RS00985 -3.2 -8.4 CDC48 family AAA ATPase compare
MMP_RS03420 -3.2 -3.3 acetolactate synthase small subunit compare
MMP_RS07645 -3.2 -8.3 aldehyde dehydrogenase family protein compare
MMP_RS05425 -3.2 -7.5 monovalent cation/H+ antiporter complex subunit F compare
MMP_RS05845 -3.1 -3.7 tRNA-intron lyase compare
MMP_RS01830 -3.1 -1.9 tRNA-Val compare
MMP_RS03025 -3.0 -8.4 molybdenum cofactor guanylyltransferase compare
MMP_RS03580 -3.0 -5.3 signal recognition particle-docking protein FtsY compare
MMP_RS08105 -3.0 -10.1 6-carboxyhexanoate--CoA ligase compare
MMP_RS08650 -3.0 -4.7 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMP_RS04790 -3.0 -17.1 4-hydroxy-tetrahydrodipicolinate reductase compare
MMP_RS07545 -3.0 -2.1 HTH domain-containing protein compare
MMP_RS07200 -2.9 -10.2 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS02875 -2.9 -14.1 chorismate pyruvate-lyase family protein compare
MMP_RS06105 -2.9 -10.4 hydrogenase maturation peptidase HycI compare
MMP_RS08720 -2.9 -2.8 4Fe-4S binding protein compare
MMP_RS05920 -2.9 -1.3 50S ribosomal protein L37e compare
MMP_RS00115 -2.8 -18.3 radical SAM protein compare
MMP_RS05440 -2.8 -15.9 winged helix-turn-helix transcriptional regulator compare
MMP_RS02240 -2.8 -4.4 methanogenesis marker 7 protein compare
MMP_RS04685 -2.7 -4.3 DUF126 domain-containing protein compare
MMP_RS05250 -2.6 -2.8 NFYB/HAP3 family transcription factor subunit compare
MMP_RS07195 -2.6 -13.2 M20 family metallo-hydrolase compare
MMP_RS01755 -2.6 -1.9 DUF2097 domain-containing protein compare
MMP_RS08330 -2.6 -5.4 NADH-quinone oxidoreductase subunit H compare
MMP_RS03140 -2.5 -16.6 hypothetical protein compare
MMP_RS03700 -2.5 -10.3 sodium:proton antiporter compare
MMP_RS00320 -2.5 -3.0 class I SAM-dependent methyltransferase compare
MMP_RS03145 -2.5 -7.6 fibrillarin-like rRNA/tRNA 2'-O-methyltransferase compare
MMP_RS03400 -2.4 -5.5 archease compare
MMP_RS01220 -2.4 -10.3 hypothetical protein compare
MMP_RS04710 -2.4 -2.9 hypothetical protein compare
MMP_RS05280 -2.4 -13.5 COG1361 S-layer family protein compare
MMP_RS01895 -2.4 -13.4 flippase compare
MMP_RS00895 -2.4 -6.4 hypothetical protein compare
MMP_RS02010 -2.4 -10.7 PHP domain-containing protein compare
MMP_RS05555 -2.4 -2.4 DUF4040 domain-containing protein compare
MMP_RS03155 -2.4 -9.9 precorrin-6A reductase compare
MMP_RS01915 -2.4 -15.5 DUF354 domain-containing protein compare
MMP_RS03445 -2.4 -1.9 methanogenesis marker 17 protein compare
MMP_RS01900 -2.3 -13.5 hypothetical protein compare
MMP_RS05505 -2.3 -10.8 class IV adenylate cyclase compare
MMP_RS05765 -2.3 -9.3 M42 family metallopeptidase compare
MMP_RS05285 -2.3 -10.5 MMPL family transporter compare
MMP_RS05430 -2.3 -6.5 TIGR00288 family NYN domain-containing protein compare
MMP_RS08760 -2.3 -3.0 hypothetical protein compare
MMP_RS07600 -2.3 -4.4 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS00620 -2.3 -11.9 4Fe-4S binding protein compare
MMP_RS04775 -2.3 -4.0 adenosylhomocysteinase compare
MMP_RS01925 -2.3 -7.6 DUF1616 domain-containing protein compare
MMP_RS03110 -2.3 -9.6 glycosyltransferase family 2 protein compare
MMP_RS07710 -2.3 -9.0 cell division protein FtsZ compare
MMP_RS07075 -2.2 -5.5 phosphomannomutase/phosphoglucomutase compare
MMP_RS01365 -2.2 -2.1 archaeal proteasome endopeptidase complex subunit alpha compare
MMP_RS06175 -2.2 -8.1 winged helix-turn-helix transcriptional regulator compare
MMP_RS06885 -2.2 -3.1 50S ribosome-binding GTPase compare
MMP_RS06475 -2.2 -7.1 FAD-dependent oxidoreductase compare
MMP_RS00695 -2.2 -1.3 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS05345 -2.2 -8.4 hypothetical protein compare
MMP_RS01910 -2.2 -12.5 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMP_RS02170 -2.2 -9.4 CBS domain-containing protein compare
MMP_RS01725 -2.1 -6.2 class I SAM-dependent methyltransferase family protein compare
MMP_RS08445 -2.1 -4.9 DUF2099 family protein compare
MMP_RS08320 -2.1 -4.9 molybdopterin molybdotransferase MoeA compare
MMP_RS02135 -2.0 -4.9 DUF5612 domain-containing protein compare
MMP_RS01905 -2.0 -13.5 glycosyltransferase compare
MMP_RS01960 -2.0 -1.2 hypothetical protein compare
MMP_RS05540 -2.0 -2.9 hypothetical protein compare
MMP_RS00750 -2.0 -3.4 fumarate hydratase compare
MMP_RS07685 -2.0 -7.4 TIGR01212 family radical SAM protein compare
MMP_RS06130 -2.0 -6.6 peptidylprolyl isomerase compare
MMP_RS04870 -2.0 -5.8 TIGR02253 family HAD-type hydrolase compare
MMP_RS04720 -2.0 -4.5 DedA family protein compare
MMP_RS08210 -1.9 -3.3 phosphatidylglycerophosphatase A compare
MMP_RS02235 -1.9 -12.5 CBS domain-containing protein compare
MMP_RS03095 -1.9 -7.9 diphthine synthase compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in nutrient t2 experiments

For nutrient t2 Mc_vitamins across organisms