Experiment set4IT093 for Methanococcus maripaludis S2

Compare to:

Formate deepwell acetate and casamino acid FREE

200 most detrimental genes:

  gene name fitness t score description  
MMP_RS01370 +2.6 20.4 acetate--CoA ligase family protein compare
MMP_RS08660 +1.2 6.6 DHH family phosphoesterase compare
MMP_RS07725 +1.2 6.6 4Fe-4S dicluster domain-containing protein compare
MMP_RS07860 +1.2 1.5 hypothetical protein compare
MMP_RS03215 +1.0 7.7 MBL fold metallo-hydrolase compare
MMP_RS07180 +0.9 7.0 DEAD/DEAH box helicase compare
MMP_RS01650 +0.9 1.8 sulfurtransferase TusA family protein compare
MMP_RS08315 +0.9 1.7 S-methyl-5-thioribose-1-phosphate isomerase compare
MMP_RS05835 +0.8 1.2 secondary thiamine-phosphate synthase enzyme YjbQ compare
MMP_RS06540 +0.8 2.8 3-methyl-2-oxobutanoate dehydrogenase subunit VorB compare
MMP_RS01525 +0.8 2.4 nucleoside-diphosphate kinase compare
MMP_RS07435 +0.8 2.7 GMP synthase subunit A compare
MMP_RS06860 +0.7 2.2 4Fe-4S binding protein compare
MMP_RS02290 +0.7 4.8 MBL fold metallo-hydrolase compare
MMP_RS07415 +0.7 2.7 molybdopterin-guanine dinucleotide biosynthesis protein MobB compare
MMP_RS03340 +0.7 1.1 ABC transporter ATP-binding protein compare
MMP_RS00975 +0.7 4.9 HD domain-containing protein compare
MMP_RS00705 +0.7 1.8 hypothetical protein compare
MMP_RS01420 +0.6 1.7 hypothetical protein compare
MMP_RS01570 +0.6 1.6 hypothetical protein compare
MMP_RS08310 +0.6 2.0 TMEM165/GDT1 family protein compare
MMP_RS06575 +0.6 2.8 fluoride efflux transporter CrcB compare
MMP_RS02295 +0.6 4.2 TatD family hydrolase compare
MMP_RS03385 +0.6 1.0 cation diffusion facilitator family transporter compare
MMP_RS08775 +0.5 2.9 methanogenesis marker 9 domain-containing protein compare
MMP_RS06545 +0.5 1.8 ferredoxin family protein compare
MMP_RS03150 +0.5 3.7 phosphoglycerate mutase compare
MMP_RS02310 +0.5 1.4 RimK-like ATPgrasp N-terminal domain-containing protein compare
MMP_RS08275 +0.5 3.5 hypothetical protein compare
MMP_RS08280 +0.5 2.1 proteasome assembly chaperone family protein compare
MMP_RS06555 +0.5 1.9 cupin domain-containing protein compare
MMP_RS07120 +0.4 3.6 coenzyme F420 hydrogenase subunit alpha compare
MMP_RS00660 +0.4 3.7 alkaline phosphatase family protein compare
MMP_RS07890 +0.4 1.5 OB-fold nucleic acid binding domain-containing protein compare
MMP_RS02230 +0.4 3.3 sodium-dependent transporter compare
MMP_RS00675 +0.4 0.8 nitroreductase family protein compare
MMP_RS04480 +0.4 3.7 lysine 2 3-aminomutase compare
MMP_RS06915 +0.4 2.0 metallophosphoesterase compare
MMP_RS01620 +0.4 2.0 hypothetical protein compare
MMP_RS06590 +0.4 1.2 GNAT family N-acetyltransferase compare
MMP_RS00185 +0.4 3.8 potassium channel protein compare
MMP_RS06675 +0.4 2.7 ADP-specific phosphofructokinase compare
MMP_RS07095 +0.4 1.2 PspC domain-containing protein compare
MMP_RS07125 +0.4 1.6 coenzyme F420-reducing hydrogenase FrhD protein compare
MMP_RS07150 +0.4 2.4 MTH895/ArsE family thioredoxin-like protein compare
MMP_RS01745 +0.4 2.5 AMP phosphorylase compare
MMP_RS02410 +0.4 1.9 ABC transporter substrate-binding protein compare
MMP_RS06325 +0.4 1.1 hypothetical protein compare
MMP_RS08860 +0.4 2.4 MinD/ParA family protein compare
MMP_RS01580 +0.4 2.7 PQQ-binding-like beta-propeller repeat protein compare
MMP_RS08075 +0.4 2.2 DUF749 domain-containing protein compare
MMP_RS09050 +0.4 1.6 CAP domain-containing protein compare
MMP_RS03320 +0.4 1.0 metal-dependent transcriptional regulator compare
MMP_RS07560 +0.4 2.5 prefoldin subunit alpha compare
MMP_RS04625 +0.4 2.7 DEAD/DEAH box helicase compare
MMP_RS00145 +0.4 2.3 ATP-dependent Clp protease proteolytic subunit compare
MMP_RS06965 +0.4 1.9 TIGR04014 family B12-binding domain/radical SAM domain-containing protein compare
MMP_RS08595 +0.4 0.7 flagellar protein C compare
MMP_RS08980 +0.4 1.4 hypothetical protein compare
MMP_RS04985 +0.4 1.9 DUF2180 family protein compare
MMP_RS04030 +0.4 2.1 hypothetical protein compare
MMP_RS01775 +0.4 0.9 TIGR00297 family protein compare
MMP_RS04520 +0.3 1.6 nucleoside deaminase compare
MMP_RS07855 +0.3 2.2 class I SAM-dependent methyltransferase compare
MMP_RS06155 +0.3 1.6 DUF4186 domain-containing protein compare
MMP_RS00760 +0.3 2.8 branched-chain-amino-acid transaminase compare
MMP_RS07910 +0.3 1.9 NAD(P)H-hydrate dehydratase compare
MMP_RS01785 +0.3 2.0 hypothetical protein compare
MMP_RS03465 +0.3 0.7 adenine phosphoribosyltransferase compare
MMP_RS02000 +0.3 2.4 radical SAM protein compare
MMP_RS07805 +0.3 1.6 ABC transporter permease compare
MMP_RS07925 +0.3 1.8 haloacid dehalogenase compare
MMP_RS06910 +0.3 2.2 RlmF-related methyltransferase compare
MMP_RS07085 +0.3 1.7 ribonuclease HII compare
MMP_RS05560 +0.3 2.0 deoxyuridine 5'-triphosphate nucleotidohydrolase compare
MMP_RS05985 +0.3 0.8 hypothetical protein compare
MMP_RS08485 +0.3 2.2 tungstate ABC transporter substrate-binding protein WtpA compare
MMP_RS00655 +0.3 1.3 hypothetical protein compare
MMP_RS08260 +0.3 2.0 DUF99 family protein compare
MMP_RS06765 +0.3 1.7 flap endonuclease-1 compare
MMP_RS01275 +0.3 1.8 class III signal peptide-containing protein compare
MMP_RS05180 +0.3 2.5 Nre family DNA repair protein compare
MMP_RS03550 +0.3 0.5 DUF2124 domain-containing protein compare
MMP_RS06920 +0.3 2.1 AAA family ATPase compare
MMP_RS06500 +0.3 2.2 ATP-binding protein compare
MMP_RS08390 +0.3 1.5 DUF5400 domain-containing protein compare
MMP_RS07155 +0.3 2.1 MFS transporter compare
MMP_RS09035 +0.3 1.1 hypothetical protein compare
MMP_RS04485 +0.3 2.5 putative beta-lysine N-acetyltransferase compare
MMP_RS08265 +0.3 1.6 rubrerythrin compare
MMP_RS01150 +0.3 1.4 aldo/keto reductase compare
MMP_RS02590 +0.3 2.0 low molecular weight phosphatase family protein compare
MMP_RS05825 +0.3 1.2 peptidyl-prolyl cis-trans isomerase compare
MMP_RS07145 +0.3 1.8 AmmeMemoRadiSam system protein B compare
MMP_RS06060 +0.3 1.5 hypothetical protein compare
MMP_RS02490 +0.3 1.0 hypothetical protein compare
MMP_RS08555 +0.3 1.1 hypothetical protein compare
MMP_RS05675 +0.3 1.2 phosphate ABC transporter ATP-binding protein PstB compare
MMP_RS06225 +0.3 1.5 DNA double-strand break repair nuclease NurA compare
MMP_RS00545 +0.3 1.2 XRE family transcriptional regulator compare
MMP_RS08615 +0.3 0.5 flagellar protein G compare
MMP_RS01260 +0.3 0.9 HDIG domain-containing protein compare
MMP_RS07615 +0.3 1.4 energy-coupling factor ABC transporter permease compare
MMP_RS07115 +0.3 1.7 MBL fold metallo-hydrolase compare
MMP_RS04730 +0.3 2.1 flavodoxin family protein compare
MMP_RS01240 +0.3 0.3 7-cyano-7-deazaguanine synthase QueC compare
MMP_RS06275 +0.3 1.9 ATP-dependent DNA helicase compare
MMP_RS07765 +0.3 1.5 sodium:alanine symporter family protein compare
MMP_RS06570 +0.3 0.7 DUF190 domain-containing protein compare
MMP_RS03890 +0.3 0.9 DUF2540 domain-containing protein compare
MMP_RS01470 +0.3 1.3 ATP-binding cassette domain-containing protein compare
MMP_RS07795 +0.3 1.9 site-2 protease family protein compare
MMP_RS06435 +0.3 1.4 CBS domain-containing protein compare
MMP_RS07620 +0.3 1.3 energy-coupling factor ABC transporter substrate-binding protein compare
MMP_RS01320 +0.3 0.9 hypothetical protein compare
MMP_RS06045 +0.3 1.9 DNA polymerase compare
MMP_RS01105 +0.3 1.4 hypothetical protein compare
MMP_RS00945 +0.2 0.5 PadR family transcriptional regulator compare
MMP_RS05700 +0.2 1.6 TfuA-related McrA-glycine thioamidation protein compare
MMP_RS08930 +0.2 0.5 hypothetical protein compare
MMP_RS01485 +0.2 1.8 right-handed parallel beta-helix repeat-containing protein compare
MMP_RS05955 +0.2 0.9 CoB--CoM heterodisulfide reductase subunit C compare
MMP_RS08370 +0.2 0.3 cation:proton antiporter subunit C compare
MMP_RS05535 +0.2 1.0 hypothetical protein compare
MMP_RS08665 +0.2 2.0 hypothetical protein compare
MMP_RS03990 +0.2 1.5 recombinase family protein compare
MMP_RS06550 +0.2 1.5 AMP-binding protein compare
MMP_RS00865 +0.2 1.2 SLC13 family permease compare
MMP_RS07775 +0.2 1.2 alanine dehydrogenase compare
MMP_RS05695 +0.2 1.4 phospholipase D-like domain-containing protein compare
MMP_RS00435 +0.2 1.6 CPBP family intramembrane metalloprotease compare
MMP_RS00240 +0.2 1.8 type II secretion system F family protein compare
MMP_RS08500 +0.2 1.3 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT compare
MMP_RS01965 +0.2 1.0 DUF1616 domain-containing protein compare
MMP_RS08535 +0.2 1.3 bis-aminopropyl spermidine synthase family protein compare
MMP_RS02770 +0.2 0.9 hypothetical protein compare
MMP_RS00060 +0.2 0.3 3-dehydroquinate synthase II compare
MMP_RS08085 +0.2 1.4 hypothetical protein compare
MMP_RS08670 +0.2 1.1 metallophosphoesterase compare
MMP_RS06335 +0.2 0.9 HAD family hydrolase compare
MMP_RS08630 +0.2 1.5 archaellar assembly protein FlaJ compare
MMP_RS00140 +0.2 1.3 DUF192 domain-containing protein compare
MMP_RS03235 +0.2 1.1 tRNA pseudouridine(13) synthase TruD compare
MMP_RS07650 +0.2 1.4 TldD/PmbA family protein compare
MMP_RS02085 +0.2 1.5 inosine/xanthosine triphosphatase compare
MMP_RS02405 +0.2 1.1 hypothetical protein compare
MMP_RS02315 +0.2 1.0 RimK family alpha-L-glutamate ligase compare
MMP_RS05715 +0.2 1.0 hypothetical protein compare
MMP_RS04315 +0.2 1.4 corrinoid protein compare
MMP_RS07130 +0.2 1.2 coenzyme F420 hydrogenase subunit gamma compare
MMP_RS05455 +0.2 1.1 DUF167 domain-containing protein compare
MMP_RS07135 +0.2 1.4 coenzyme F420 hydrogenase subunit beta compare
MMP_RS06460 +0.2 0.9 pyrimidine dimer DNA glycosylase/endonuclease V compare
MMP_RS04150 +0.2 1.2 MFS transporter compare
MMP_RS02695 +0.2 1.2 formylmethanofuran dehydrogenase subunit A compare
MMP_RS06430 +0.2 1.0 6-carboxytetrahydropterin synthase QueD compare
MMP_RS01120 +0.2 0.9 permease compare
MMP_RS05175 +0.2 1.2 hypothetical protein compare
MMP_RS02895 +0.2 0.9 DHH family phosphoesterase compare
MMP_RS06875 +0.2 0.9 FAD-dependent oxidoreductase compare
MMP_RS02705 +0.2 1.3 formylmethanofuran dehydrogenase subunit B compare
MMP_RS05435 +0.2 1.4 5'/3'-nucleotidase SurE compare
MMP_RS04145 +0.2 0.5 hypothetical protein compare
MMP_RS07840 +0.2 0.7 ribonuclease III compare
MMP_RS05490 +0.2 0.9 IMPACT family protein compare
MMP_RS00960 +0.2 1.1 iron export ABC transporter permease subunit FetB compare
MMP_RS01550 +0.2 1.0 DUF1624 domain-containing protein compare
MMP_RS08455 +0.2 0.7 multiprotein bridging factor aMBF1 compare
MMP_RS00910 +0.2 1.2 2-phosphosulfolactate phosphatase compare
MMP_RS02495 +0.2 0.5 hypothetical protein compare
MMP_RS05355 +0.2 0.2 hypothetical protein compare
MMP_RS02845 +0.2 1.4 hypothetical protein compare
MMP_RS05945 +0.2 0.5 CBS domain-containing protein compare
MMP_RS05990 +0.2 0.9 DsrE family protein compare
MMP_RS04105 +0.2 0.8 MarR family transcriptional regulator compare
MMP_RS01630 +0.2 1.2 N-glycosylase/DNA lyase compare
MMP_RS01090 +0.2 1.1 ABC transporter substrate-binding protein compare
MMP_RS08350 +0.2 0.3 hypothetical protein compare
MMP_RS00445 +0.2 1.2 7-carboxy-7-deazaguanine synthase QueE compare
MMP_RS06445 +0.2 1.1 DUF89 domain-containing protein compare
MMP_RS05720 +0.2 0.4 signal recognition particle subunit SRP19/SEC65 family protein compare
MMP_RS01430 +0.2 1.1 mechanosensitive ion channel family protein compare
MMP_RS07985 +0.2 1.1 nitroreductase family protein compare
MMP_RS08410 +0.2 1.0 DUF169 domain-containing protein compare
MMP_RS05940 +0.2 0.9 corrinoid protein compare
MMP_RS08335 +0.2 0.8 NADH-quinone oxidoreductase subunit B family protein compare
MMP_RS03750 +0.2 1.1 ACT domain-containing protein compare
MMP_RS05900 +0.2 1.1 tetratricopeptide repeat protein compare
MMP_RS05315 +0.2 0.5 hypothetical protein compare
MMP_RS04035 +0.2 0.5 hypothetical protein compare
MMP_RS01515 +0.2 1.0 PINc/VapC family ATPase compare
MMP_RS03570 +0.2 1.3 uracil-xanthine permease family protein compare
MMP_RS02840 +0.2 1.0 DUF123 domain-containing protein compare
MMP_RS08480 +0.2 1.2 molybdate ABC transporter substrate-binding protein compare
MMP_RS08750 +0.2 0.5 hypothetical protein compare
MMP_RS03860 +0.2 1.0 hypothetical protein compare
MMP_RS06665 +0.2 0.9 glycogen/starch synthase compare
MMP_RS09065 +0.1 1.1 hypothetical protein compare
MMP_RS01285 +0.1 1.0 hypothetical protein compare
MMP_RS01160 +0.1 1.0 DMT family transporter compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in nutrient t2 experiments

For nutrient t2 Mc_vitamins across organisms