Experiment set4IT093 for Desulfovibrio vulgaris Hildenborough JW710

Compare to:

MoLS4 with limited carbon source D,L-Lactate (7mM)

200 most detrimental genes:

  gene name fitness t score description  
DVU2454 +0.9 0.7 hypothetical protein (TIGR) compare
DVU0024 +0.9 1.6 conserved hypothetical protein (TIGR) compare
DVU1192 acyP +0.8 4.7 acylphosphatase (TIGR) compare
DVU1409 +0.8 4.9 hypothetical protein (TIGR) compare
DORF26446 +0.8 1.5 no description compare
DVU0376 +0.8 2.1 hypothetical protein (TIGR) compare
DVUA0089 +0.8 1.0 hypothetical protein (TIGR) compare
DVU2044 +0.7 1.1 hypothetical protein (TIGR) compare
DVU0920 atpI +0.7 2.2 ATP synthase protein I (TIGR) compare
DVU1210 +0.7 0.6 conserved hypothetical protein (TIGR) compare
DVU2873 +0.7 0.9 hypothetical protein (TIGR) compare
DVU0302 +0.6 3.6 chemotaxis protein CheX, putative (TIGR) compare
DVU1630 ptsN +0.6 1.6 PTS system, IIA component (TIGR) compare
DVU2300 +0.6 1.1 hypothetical protein (TIGR) compare
DVU2510 +0.6 0.6 penicillin-binding protein (TIGR) compare
DVU2206 +0.6 3.4 conserved hypothetical protein (TIGR) compare
DVU2740 livF +0.6 2.5 high-affinity branched-chain amino acid ABC transporter, ATP-binding protein (TIGR) compare
DVU1436 +0.6 0.9 hypothetical protein (TIGR) compare
DVU1377 ilvN-2 +0.5 0.8 acetolactate synthase, small subunit (TIGR) compare
DVU2115 +0.5 1.1 hypothetical protein (TIGR) compare
DVU0232 +0.5 0.8 hypothetical protein (TIGR) compare
DVU0530 rrf1 +0.5 2.1 Rrf1 protein (voordouw) compare
DVU0312 fliG +0.5 4.2 flagellar motor switch protein FliG (TIGR) compare
DVU1634 +0.5 0.9 membrane protein, putative (TIGR) compare
DVU2743 livH +0.5 3.5 high-affinity branched-chain amino acid ABC ransporter, permease protein (TIGR) compare
DVU0859 +0.5 3.5 hypothetical protein (TIGR) compare
DVU0657 +0.5 1.0 heat shock protein, Hsp20 family (TIGR) compare
DVU0690 +0.5 2.7 conserved hypothetical protein (TIGR) compare
DVU2742 livM +0.5 3.2 high-affinity branched chain amino acid ABC transporter, permease protein (TIGR) compare
DVU2741 livG +0.5 3.7 high-affinity branched chain amino acid ABC transporter, ATP-binding protein (TIGR) compare
DVU1682 +0.5 1.8 GAF domain protein (TIGR) compare
DVU1944 oorD +0.5 2.2 pyruvate ferredoxin oxidoreductase, iron-sulfur binding subunit, putative (TIGR) compare
DVU2852 +0.5 2.5 tail protein, putative (TIGR) compare
DVU1611 +0.5 2.2 molybdopterin oxidoreductase domain protein (TIGR) compare
DVU0311 +0.5 3.1 flagellar assembly protein FliH, putative (TIGR) compare
DVU1395 +0.4 0.7 C4-type zinc finger protein, DksA/TraR family (TIGR) compare
DVU1221 +0.4 1.3 hypothetical protein (TIGR) compare
DVU0250 +0.4 1.9 hypothetical protein (TIGR) compare
DVU2855 +0.4 0.9 tail/DNA circulation protein, putative (TIGR) compare
DVU1162 +0.4 1.2 hypothetical protein (TIGR) compare
DVU0014 infA-1 +0.4 1.5 translation initiation factor IF-1 (TIGR) compare
DVU1455 +0.4 1.1 conserved hypothetical protein (TIGR) compare
DVU1225 +0.4 1.0 hypothetical protein (TIGR) compare
DVU0043 fliQ +0.4 2.6 flagellar biosynthetic protein FliQ (TIGR) compare
DVU0764 hup-2 +0.4 1.9 DNA-binding protein HU (TIGR) compare
DVU0215 +0.4 1.8 tail protein, putative (TIGR) compare
DVU0305 fd II +0.4 1.9 ferredoxin II (Sean Caffrey) compare
DVU1458 +0.4 2.7 chemotaxis protein CheZ, putative (TIGR) compare
DVU1737 +0.4 1.7 conserved hypothetical protein (TIGR) compare
DVU0314 fliE +0.4 2.1 flagellar basal body component FliE (TIGR) compare
DVUA0118 +0.4 1.2 type III secretion protein, YopL family (TIGR) compare
DVU0034 +0.4 3.1 DSBA-like thioredoxin domain protein (TIGR) compare
DVU1158 +0.4 0.8 hypothetical protein (TIGR) compare
DVU2744 +0.4 2.5 high-affinity branched-chain amino acid ABC transporter, perisplasmic amino acid binding protein (TIGR) compare
DVU0315 flgC +0.4 2.9 flagellar basal-body rod protein FlgC (TIGR) compare
DVU1506 +0.4 1.1 hypothetical protein (TIGR) compare
DVU1267 +0.4 2.8 hypothetical protein (TIGR) compare
DVU1431 +0.4 3.0 hpt domain protein/STAS domain protein (TIGR) compare
DVU2658 +0.4 1.4 conserved hypothetical protein (TIGR) compare
DVU0046 fliN +0.4 2.2 flagellar motor switch protein FliN (TIGR) compare
DVU0001 dnaA-1 +0.4 1.8 chromosomal replication initiator protein DnaA (TIGR) compare
DVU2808 +0.4 2.0 TonB domain protein (TIGR) compare
DVU2682 +0.4 1.3 DedA family protein (TIGR) compare
DVU3133 glpF +0.4 1.1 glycerol uptake facilitator protein (TIGR) compare
DVU1087 +0.4 1.9 conserved hypothetical protein (TIGR) compare
DVU1842 +0.4 0.9 lipoprotein, putative (TIGR) compare
DVU0486 +0.4 2.5 hypothetical protein (TIGR) compare
DVU2609 +0.4 2.3 chemotaxis MotB protein, putative (TIGR) compare
DVU2116 +0.3 1.6 pilin, putative (TIGR) compare
DVU2712 +0.3 0.6 hypothetical protein (TIGR) compare
DVU2113 +0.3 1.5 xanthine/uracil permease family protein (TIGR) compare
DVU1863 +0.3 2.6 flagellar synthesis regulator FleN, putative (TIGR) compare
DVU0793 +0.3 2.1 hypothetical protein (TIGR) compare
DVU1449 +0.3 2.2 anti-anti-sigma factor, putative (TIGR) compare
DVU0313 fliF +0.3 2.6 flagellar M-ring protein FliF (TIGR) compare
DVU1521 +0.3 0.2 hypothetical protein (TIGR) compare
DVU1088 +0.3 1.0 hypothetical protein (TIGR) compare
DVU3093 rdl +0.3 1.4 rubredoxin-like protein (TIGR) compare
DVU0044 fliP +0.3 2.5 flagellar biosynthetic protein fliP (TIGR) compare
DVU0047 +0.3 2.1 flagellar protein FliL (TIGR) compare
DVU0747 cysA +0.3 1.5 ABC transporter, ATP-binding protein (TIGR) compare
DVU1816 +0.3 1.6 conserved hypothetical protein (TIGR) compare
DVU2915 +0.3 1.6 hypothetical protein (TIGR) compare
DVU3175 +0.3 1.0 membrane protein, putative (TIGR) compare
DVU2292 hypA +0.3 0.7 hydrogenase nickel insertion protein HypA (TIGR) compare
DVU3393 +0.3 0.6 hypothetical protein (TIGR) compare
DVU0649 +0.3 1.9 iron compound ABC transporter, permease protein (TIGR) compare
DORF18707 +0.3 0.3 no description compare
DVU1955 +0.3 2.1 TPR domain protein (TIGR) compare
DVU0569 flrA +0.3 2.5 sigma-54 dependent transcriptional regulator (TIGR) compare
DVU2556 +0.3 1.2 hypothetical protein (TIGR) compare
DVU1187 +0.3 1.6 hypothetical protein (TIGR) compare
DVU3177 +0.3 2.1 hypothetical protein (TIGR) compare
DVU1980 +0.3 1.9 hypothetical protein (TIGR) compare
DVU2307 +0.3 1.4 C4-type zinc finger protein, DksA/TraR family (TIGR) compare
DVU2158 +0.3 1.8 hypothetical protein (TIGR) compare
DVU1926 +0.3 1.3 conserved hypothetical protein (TIGR) compare
DVU2250 +0.3 1.4 AMP-binding protein (TIGR) compare
DVU2907 umuD +0.3 1.6 umuD protein (TIGR) compare
DVU2761 +0.3 0.3 hypothetical protein (TIGR) compare
DVU1253 +0.3 1.4 hypothetical protein (TIGR) compare
DVU2257 +0.3 1.2 hypothetical protein (TIGR) compare
DVU0359 +0.3 1.2 HesB-like domain (TIGR) compare
DVU1033 cinA +0.3 0.3 competence/damage-inducible protein CinA protein, truncation (TIGR) compare
DVU2090 +0.3 1.9 EF hand domain protein (TIGR) compare
DVU1752 +0.3 1.8 hypothetical protein (TIGR) compare
DVU1919 +0.3 1.4 hydrogenase expression/formation protein, putative (TIGR) compare
DVU2362 thiE-2 +0.3 0.9 thiamine-phosphate pyrophosphorylase (TIGR) compare
DVU0909 +0.3 1.2 hypothetical protein (TIGR) compare
DVU2333 ndk +0.3 1.1 nucleoside diphosphate kinase (TIGR) compare
DVU0514 +0.3 1.9 FlgA family protein (TIGR) compare
DVU0512 flgF +0.3 2.3 flagellar basal-body rod protein, putative (TIGR) compare
DVUA0135 +0.3 0.9 CRISPR-associated protein Cas2 (TIGR) compare
DVU1567 +0.3 1.4 hypothetical protein (TIGR) compare
DVU2877 +0.3 2.0 hypothetical protein (TIGR) compare
DVU1389 +0.3 1.4 hypothetical protein (TIGR) compare
DVU2212 +0.3 2.2 conserved hypothetical protein (TIGR) compare
DVU2720 +0.3 1.1 hypothetical protein (TIGR) compare
DVUA0092 +0.3 1.8 hypothetical protein (TIGR) compare
DVU2516 +0.3 2.4 CBS domain protein (TIGR) compare
DVU3339.1 kdpF +0.3 1.3 potassium-transporting ATPase, KdpF subunit (TIGR) compare
DVU1620 +0.3 0.5 hypothetical protein (TIGR) compare
DVU2051 +0.3 1.0 hypothetical protein (TIGR) compare
DVU0146 +0.3 1.5 hypothetical protein (TIGR) compare
DVU0274 +0.3 1.4 hypothetical protein (TIGR) compare
DVU1251 +0.3 1.0 hypothetical protein (TIGR) compare
DVU0910 fliM +0.3 1.9 flagellar motor switch protein FliM (TIGR) compare
DVU3234 +0.3 1.3 flagellar biosynthetic protein FliR (TIGR) compare
DVU2888 +0.3 1.7 cobalt ABC transporter, ATP-binding protein, putative (TIGR) compare
DVU0880 +0.3 1.6 hypothetical protein (TIGR) compare
DVU2600 +0.3 0.8 hypothetical protein (TIGR) compare
DVU1444 flgD +0.3 1.8 basal-body rod modification protein FlgD (TIGR) compare
DVUA0144 +0.3 1.0 hypothetical protein (TIGR) compare
DORF46408 +0.3 0.9 no description compare
DVU1058 nikM +0.3 0.6 component of nickel ABC transport system (Dmitry Rodionov) compare
DVU0159 +0.3 1.5 thioesterase family protein (TIGR) compare
DVU3035 +0.3 1.7 methyl-accepting chemotaxis protein, putative (TIGR) compare
DVU0979 b1200 +0.3 1.8 DAK1 domain protein (TIGR) compare
DVU0045 +0.3 1.1 flagellar biosynthesis protein, FliO, putative (TIGR) compare
DVU1393 +0.3 0.6 hypothetical protein (TIGR) compare
DVU1280 +0.3 1.1 conserved hypothetical protein TIGR00159 (TIGR) compare
DVU0595 +0.3 1.4 conserved hypothetical protein (TIGR) compare
DVU1736 +0.3 1.7 hypothetical protein (TIGR) compare
DVU3260 +0.3 0.7 hypothetical protein (TIGR) compare
DVU0980 b1199 +0.3 1.7 DAK2 domain protein (TIGR) compare
DVU2021 +0.3 0.7 hypothetical protein (TIGR) compare
DVU3117 +0.3 0.9 hypothetical protein (TIGR) compare
DVU0883 nrdH +0.2 1.5 glutaredoxin, putative (TIGR) compare
DVU3352 +0.2 1.8 lipoprotein, putative (TIGR) compare
DVU0568 +0.2 1.9 rhodanese-like domain protein (TIGR) compare
DVU1531 +0.2 1.3 methyltransferase, putative (TIGR) compare
DVU3378 +0.2 1.4 YbaK/EbsC protein (TIGR) compare
DVU1174 +0.2 0.6 hypothetical protein (TIGR) compare
DVU3306 +0.2 1.4 hypothetical protein (TIGR) compare
DVU1722 +0.2 1.3 hypothetical protein (TIGR) compare
DVU2831 +0.2 1.0 hypothetical protein (TIGR) compare
DVU0516 flgI +0.2 1.9 flagellar P-ring protein FlgI (TIGR) compare
DVU1536 mltC +0.2 1.6 transglycosylase, SLT family (TIGR) compare
DVU1392 +0.2 1.7 NLP/P60 family protein (TIGR) compare
DVU0513 flgG +0.2 1.7 flagellar basal-body rod protein FlgG (TIGR) compare
DVU2809 +0.2 1.0 cytochrome c3 (TIGR) compare
DVU1518 +0.2 0.6 transcriptional regulator cI, truncation (TIGR) compare
DVU3227 +0.2 1.1 flagellar basal body-associated protein, putative (TIGR) compare
DVU1413 +0.2 1.8 conserved hypothetical protein (TIGR) compare
DVU0912 +0.2 0.9 conserved domain protein (TIGR) compare
DVU2117 +0.2 1.8 membrane protein, putative (TIGR) compare
DORF27863 +0.2 1.7 no description compare
DVU1960 cheA-2 +0.2 1.8 chemotaxis protein CheA (TIGR) compare
DVU1099 +0.2 1.3 tail fiber assembly protein, putative (TIGR) compare
DVU2623 +0.2 1.1 hypothetical protein (TIGR) compare
DVU0032 +0.2 0.9 conserved hypothetical protein (TIGR) compare
DVU1970 +0.2 1.6 response regulator (TIGR) compare
DVU2381 +0.2 1.9 conserved hypothetical protein (TIGR) compare
DVU2396 adh +0.2 1.4 alcohol dehydrogenase (Chris Hemme) compare
DVU1570 porB +0.2 0.8 pyruvate ferredoxin oxidoreductase, beta subunit (TIGR) compare
DVU1705 +0.2 1.0 type I restriction-modification enzyme, S subunit (TIGR) compare
DVU2096 +0.2 0.9 hypothetical protein (TIGR) compare
DVU1577 hslV +0.2 0.7 ATP-dependent protease hslV (TIGR) compare
DVU2893 flgG +0.2 0.6 flagellar basal-body rod protein, putative (TIGR) compare
DVU1230 +0.2 0.8 hypothetical protein (TIGR) compare
DVU2806 +0.2 1.3 MotA/TolQ/ExbB proton channel family protein (TIGR) compare
DVU0008 +0.2 0.2 hypothetical protein (TIGR) compare
DVU2962 +0.2 1.6 sensor histidine kinase (TIGR) compare
DVU2232 +0.2 1.2 hypothetical protein (TIGR) compare
DVU2961 +0.2 1.7 hypothetical protein (TIGR) compare
DVU1218 +0.2 1.5 conserved hypothetical protein (TIGR) compare
DORF12455 +0.2 0.8 SEED: helix-turn-helix protein, CopG family compare
DVU2169 +0.2 1.3 conserved hypothetical protein (TIGR) compare
DVU0899 +0.2 0.4 conserved hypothetical protein (TIGR) compare
DVU2166 +0.2 0.6 holin (TIGR) compare
DVU0544 +0.2 1.8 hypothetical protein (TIGR) compare
DVU1916 +0.2 0.7 hypothetical protein (TIGR) compare
DVU2122 cpaF +0.2 1.7 type II/IV secretion system protein (TIGR) compare
DVU2291 +0.2 0.6 carbon monoxide-induced hydrogenase CooH, putative (TIGR) compare
DVU2172 +0.2 0.8 hypothetical protein (TIGR) compare
DVU1948 +0.2 1.5 conserved hypothetical protein (TIGR) compare
DVU1875 +0.2 1.2 dafA protein (TIGR) compare
DVU2894 flrA +0.2 1.4 sigma-54 dependent transcriptional regulator (TIGR) compare
DVU0842 +0.2 1.2 hypothetical protein (TIGR) compare
DVU0097 potB +0.2 0.9 polyamine ABC transporter, permease protein (TIGR) compare


Specific Phenotypes

None in this experiment

For Desulfovibrio vulgaris Hildenborough JW710 in respiratory growth experiments

For respiratory growth Sodium D,L-Lactate across organisms