Culturing: acidovorax_3H11_ML3a, 24 deep-well microplate; Multitron, Aerobic, at 30 (C), shaken=750 rpm
| Pathway | #Steps | #Present | #Specific |
|---|
| L-alanine biosynthesis I | 2 | 2 | 2 |
| fatty acid β-oxidation III (unsaturated, odd number) | 1 | 1 | 1 |
| benzoyl-CoA biosynthesis | 3 | 3 | 2 |
| superpathway of L-alanine biosynthesis | 4 | 4 | 2 |
| L-isoleucine degradation I | 6 | 5 | 3 |
| oleate β-oxidation (thioesterase-dependent, yeast) | 2 | 1 | 1 |
| ethylene glycol degradation | 2 | 1 | 1 |
| putrescine degradation I | 2 | 1 | 1 |
| arsenite to oxygen electron transfer | 2 | 1 | 1 |
| putrescine degradation V | 2 | 1 | 1 |
| oleate β-oxidation | 35 | 29 | 16 |
| fatty acid β-oxidation I (generic) | 7 | 5 | 3 |
| adipate degradation | 5 | 5 | 2 |
| adipate biosynthesis | 5 | 4 | 2 |
| fatty acid β-oxidation II (plant peroxisome) | 5 | 3 | 2 |
| glutaryl-CoA degradation | 5 | 3 | 2 |
| fatty acid β-oxidation IV (unsaturated, even number) | 5 | 3 | 2 |
| fatty acid β-oxidation V (unsaturated, odd number, di-isomerase-dependent) | 5 | 2 | 2 |
| L-valine degradation I | 8 | 6 | 3 |
| pyruvate fermentation to hexanol (engineered) | 11 | 7 | 4 |
| (8E,10E)-dodeca-8,10-dienol biosynthesis | 11 | 6 | 4 |
| 2-methyl-branched fatty acid β-oxidation | 14 | 10 | 5 |
| ethanol degradation IV | 3 | 3 | 1 |
| glycine cleavage | 3 | 3 | 1 |
| glycine biosynthesis II | 3 | 3 | 1 |
| CDP-4-dehydro-3,6-dideoxy-D-glucose biosynthesis | 3 | 3 | 1 |
| ethanol degradation II | 3 | 3 | 1 |
| pyruvate fermentation to butanol II (engineered) | 6 | 5 | 2 |
| fatty acid salvage | 6 | 5 | 2 |
| propanoate fermentation to 2-methylbutanoate | 6 | 5 | 2 |
| valproate β-oxidation | 9 | 7 | 3 |
| L-isoleucine biosynthesis V | 3 | 2 | 1 |
| L-valine degradation II | 3 | 2 | 1 |
| L-leucine degradation III | 3 | 2 | 1 |
| L-isoleucine degradation II | 3 | 2 | 1 |
| putrescine degradation IV | 3 | 2 | 1 |
| hypotaurine degradation | 3 | 2 | 1 |
| ethanol degradation III | 3 | 2 | 1 |
| methyl ketone biosynthesis (engineered) | 6 | 3 | 2 |
| 4-toluenecarboxylate degradation | 3 | 1 | 1 |
| oleate β-oxidation (reductase-dependent, yeast) | 3 | 1 | 1 |
| L-leucine degradation V (oxidative Stickland reaction) | 3 | 1 | 1 |
| L-isoleucine degradation III (oxidative Stickland reaction) | 3 | 1 | 1 |
| L-valine degradation III (oxidative Stickland reaction) | 3 | 1 | 1 |
| histamine degradation | 3 | 1 | 1 |
| resorcinol degradation | 3 | 1 | 1 |
| arsenite to oxygen electron transfer (via azurin) | 3 | 1 | 1 |
| benzoyl-CoA degradation I (aerobic) | 7 | 6 | 2 |
| pyruvate fermentation to butanoate | 7 | 3 | 2 |
| fatty acid β-oxidation VI (mammalian peroxisome) | 7 | 3 | 2 |
| octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) | 12 | 12 | 3 |
| L-valine biosynthesis | 4 | 4 | 1 |
| gondoate biosynthesis (anaerobic) | 4 | 4 | 1 |
| phytol degradation | 4 | 3 | 1 |
| aerobic respiration I (cytochrome c) | 4 | 3 | 1 |
| pyruvate fermentation to butanol I | 8 | 4 | 2 |
| aerobic respiration II (cytochrome c) (yeast) | 4 | 2 | 1 |
| fatty acid α-oxidation I (plants) | 4 | 2 | 1 |
| 4-sulfocatechol degradation | 4 | 2 | 1 |
| 4-toluenesulfonate degradation I | 4 | 1 | 1 |
| oleate β-oxidation (isomerase-dependent, yeast) | 4 | 1 | 1 |
| L-tryptophan degradation X (mammalian, via tryptamine) | 4 | 1 | 1 |
| 4-aminophenol degradation | 4 | 1 | 1 |
| putrescine degradation III | 4 | 1 | 1 |
| D-arabinose degradation II | 4 | 1 | 1 |
| γ-resorcylate degradation II | 4 | 1 | 1 |
| γ-resorcylate degradation I | 4 | 1 | 1 |
| palmitate biosynthesis III | 29 | 28 | 7 |
| tetradecanoate biosynthesis (mitochondria) | 25 | 23 | 6 |
| palmitate biosynthesis II (type II fatty acid synthase) | 31 | 29 | 7 |
| palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate) | 9 | 8 | 2 |
| phenylacetate degradation I (aerobic) | 9 | 5 | 2 |
| benzoate biosynthesis I (CoA-dependent, β-oxidative) | 9 | 4 | 2 |
| superpathway of Clostridium acetobutylicum acidogenic fermentation | 9 | 4 | 2 |
| oleate biosynthesis IV (anaerobic) | 14 | 13 | 3 |
| superpathway of glyoxylate cycle and fatty acid degradation | 14 | 11 | 3 |
| superpathway of fatty acids biosynthesis (E. coli) | 53 | 49 | 11 |
| anteiso-branched-chain fatty acid biosynthesis | 34 | 30 | 7 |
| odd iso-branched-chain fatty acid biosynthesis | 34 | 30 | 7 |
| even iso-branched-chain fatty acid biosynthesis | 34 | 30 | 7 |
| fatty acid elongation -- saturated | 5 | 5 | 1 |
| superpathway of unsaturated fatty acids biosynthesis (E. coli) | 20 | 18 | 4 |
| 4-hydroxybenzoate biosynthesis III (plants) | 5 | 4 | 1 |
| 8-amino-7-oxononanoate biosynthesis IV | 5 | 4 | 1 |
| cis-vaccenate biosynthesis | 5 | 4 | 1 |
| 3-phenylpropanoate degradation | 10 | 6 | 2 |
| L-glutamate degradation V (via hydroxyglutarate) | 10 | 6 | 2 |
| 4-chlorocatechol degradation | 5 | 3 | 1 |
| octane oxidation | 5 | 3 | 1 |
| CDP-6-deoxy-D-gulose biosynthesis | 5 | 3 | 1 |
| (R)- and (S)-3-hydroxybutanoate biosynthesis (engineered) | 5 | 3 | 1 |
| sphingosine and sphingosine-1-phosphate metabolism | 10 | 4 | 2 |
| 9-cis, 11-trans-octadecadienoyl-CoA degradation (isomerase-dependent, yeast) | 10 | 4 | 2 |
| mitochondrial NADPH production (yeast) | 5 | 2 | 1 |
| 3-chlorocatechol degradation II (ortho) | 5 | 2 | 1 |
| 3-chlorocatechol degradation I (ortho) | 5 | 2 | 1 |
| 4-nitrophenol degradation I | 5 | 1 | 1 |
| dopamine degradation | 5 | 1 | 1 |
| L-leucine degradation IV (reductive Stickland reaction) | 5 | 1 | 1 |
| benzoate biosynthesis III (CoA-dependent, non-β-oxidative) | 5 | 1 | 1 |
| 4-hydroxyacetophenone degradation | 5 | 1 | 1 |
| 4-nitrophenol degradation II | 5 | 1 | 1 |
| superpathway of fatty acid biosynthesis II (plant) | 43 | 38 | 8 |
| 8-amino-7-oxononanoate biosynthesis I | 11 | 9 | 2 |
| superpathway of phenylethylamine degradation | 11 | 6 | 2 |
| superpathway of branched chain amino acid biosynthesis | 17 | 17 | 3 |
| (5Z)-dodecenoate biosynthesis I | 6 | 6 | 1 |
| L-leucine biosynthesis | 6 | 6 | 1 |
| glyoxylate cycle | 6 | 6 | 1 |
| stearate biosynthesis II (bacteria and plants) | 6 | 5 | 1 |
| L-leucine degradation I | 6 | 5 | 1 |
| (5Z)-dodecenoate biosynthesis II | 6 | 5 | 1 |
| L-isoleucine biosynthesis IV | 6 | 4 | 1 |
| stearate biosynthesis IV | 6 | 4 | 1 |
| 3-methyl-branched fatty acid α-oxidation | 6 | 3 | 1 |
| 6-gingerol analog biosynthesis (engineered) | 6 | 3 | 1 |
| petroselinate biosynthesis | 6 | 2 | 1 |
| Fe(II) oxidation | 6 | 2 | 1 |
| L-glutamate degradation VII (to butanoate) | 12 | 3 | 2 |
| alkane oxidation | 6 | 1 | 1 |
| superpathway of Clostridium acetobutylicum solventogenic fermentation | 13 | 6 | 2 |
| noradrenaline and adrenaline degradation | 13 | 4 | 2 |
| streptorubin B biosynthesis | 34 | 20 | 5 |
| L-isoleucine biosynthesis I (from threonine) | 7 | 7 | 1 |
| superpathway of glycol metabolism and degradation | 7 | 5 | 1 |
| L-isoleucine biosynthesis III | 7 | 4 | 1 |
| 4,5-dichlorocatechol degradation | 7 | 4 | 1 |
| serotonin degradation | 7 | 3 | 1 |
| 2,4,6-trichlorophenol degradation | 7 | 3 | 1 |
| chlorosalicylate degradation | 7 | 3 | 1 |
| ceramide degradation by α-oxidation | 7 | 2 | 1 |
| limonene degradation IV (anaerobic) | 7 | 1 | 1 |
| Spodoptera littoralis pheromone biosynthesis | 22 | 4 | 3 |
| biotin biosynthesis I | 15 | 13 | 2 |
| L-tryptophan degradation III (eukaryotic) | 15 | 7 | 2 |
| superpathway of fatty acid biosynthesis I (E. coli) | 16 | 15 | 2 |
| glycerol degradation to butanol | 16 | 10 | 2 |
| L-isoleucine biosynthesis II | 8 | 5 | 1 |
| superpathway of NAD/NADP - NADH/NADPH interconversion (yeast) | 8 | 4 | 1 |
| 3,5-dichlorocatechol degradation | 8 | 4 | 1 |
| superpathway of ornithine degradation | 8 | 3 | 1 |
| superpathway of CDP-glucose-derived O-antigen building blocks biosynthesis | 8 | 3 | 1 |
| crotonate fermentation (to acetate and cyclohexane carboxylate) | 16 | 4 | 2 |
| ceramide and sphingolipid recycling and degradation (yeast) | 16 | 4 | 2 |
| 2-methylpropene degradation | 8 | 2 | 1 |
| 2-allylmalonyl-CoA biosynthesis | 8 | 2 | 1 |
| aromatic biogenic amine degradation (bacteria) | 8 | 1 | 1 |
| superpathway of Clostridium acetobutylicum acidogenic and solventogenic fermentation | 17 | 7 | 2 |
| benzoate fermentation (to acetate and cyclohexane carboxylate) | 17 | 5 | 2 |
| folate transformations III (E. coli) | 9 | 7 | 1 |
| 3-hydroxypropanoate/4-hydroxybutanate cycle | 18 | 10 | 2 |
| 3,4,6-trichlorocatechol degradation | 9 | 5 | 1 |
| Entner-Doudoroff pathway II (non-phosphorylative) | 9 | 4 | 1 |
| 1,4-dichlorobenzene degradation | 9 | 4 | 1 |
| 2,4,5-trichlorophenoxyacetate degradation | 9 | 3 | 1 |
| toluene degradation VI (anaerobic) | 18 | 4 | 2 |
| pentachlorophenol degradation | 10 | 4 | 1 |
| methyl tert-butyl ether degradation | 10 | 2 | 1 |
| pinoresinol degradation | 10 | 2 | 1 |
| folate transformations II (plants) | 11 | 8 | 1 |
| γ-hexachlorocyclohexane degradation | 11 | 6 | 1 |
| superpathway of L-arginine, putrescine, and 4-aminobutanoate degradation | 11 | 4 | 1 |
| gallate degradation III (anaerobic) | 11 | 4 | 1 |
| superpathway of glyoxylate bypass and TCA | 12 | 10 | 1 |
| 10-trans-heptadecenoyl-CoA degradation (reductase-dependent, yeast) | 12 | 2 | 1 |
| 10-cis-heptadecenoyl-CoA degradation (yeast) | 12 | 2 | 1 |
| androstenedione degradation I (aerobic) | 25 | 6 | 2 |
| superpathway of L-isoleucine biosynthesis I | 13 | 13 | 1 |
| folate transformations I | 13 | 7 | 1 |
| superpathway of L-arginine and L-ornithine degradation | 13 | 6 | 1 |
| platensimycin biosynthesis | 26 | 7 | 2 |
| (4Z,7Z,10Z,13Z,16Z)-docosapentaenoate biosynthesis (6-desaturase) | 13 | 2 | 1 |
| 1-butanol autotrophic biosynthesis (engineered) | 27 | 19 | 2 |
| androstenedione degradation II (anaerobic) | 27 | 4 | 2 |
| superpathway of testosterone and androsterone degradation | 28 | 6 | 2 |
| superpathway of cholesterol degradation I (cholesterol oxidase) | 42 | 8 | 3 |
| docosahexaenoate biosynthesis III (6-desaturase, mammals) | 14 | 2 | 1 |
| superpathway of cholesterol degradation II (cholesterol dehydrogenase) | 47 | 8 | 3 |
| cholesterol degradation to androstenedione I (cholesterol oxidase) | 17 | 2 | 1 |
| superpathway of L-threonine metabolism | 18 | 10 | 1 |
| streptomycin biosynthesis | 18 | 2 | 1 |
| cholesterol degradation to androstenedione II (cholesterol dehydrogenase) | 22 | 2 | 1 |
| superpathway of cholesterol degradation III (oxidase) | 49 | 4 | 2 |
| superpathway of glycolysis, pyruvate dehydrogenase, TCA, and glyoxylate bypass | 26 | 23 | 1 |
| photosynthetic 3-hydroxybutanoate biosynthesis (engineered) | 26 | 17 | 1 |
| mycolate biosynthesis | 205 | 21 | 5 |
| superpathway of pentose and pentitol degradation | 42 | 14 | 1 |
| superpathway of mycolate biosynthesis | 239 | 22 | 5 |