Experiment set4IT092 for Klebsiella michiganensis M5al

Compare to:

D-Ribose carbon source

200 most detrimental genes:

  gene name fitness t score description  
BWI76_RS00295 +1.7 9.9 transcriptional regulator RbsR conserved
BWI76_RS12420 +1.5 2.3 peptide ABC transporter substrate-binding protein SapA compare
BWI76_RS22475 +1.4 3.8 heme ABC transporter ATP-binding protein compare
BWI76_RS11810 +1.3 3.1 outer membrane protein OmpW compare
BWI76_RS02580 +1.1 1.6 23S rRNA (guanosine(2251)-2'-O)-methyltransferase compare
BWI76_RS11255 +1.1 1.9 putrescine/spermidine ABC transporter ATP-binding protein compare
BWI76_RS15845 +1.1 1.4 hypothetical protein compare
BWI76_RS21340 +1.1 2.9 SoxR reducing system protein RseC compare
BWI76_RS12465 +1.1 1.6 phage shock protein D compare
BWI76_RS27475 +1.1 8.5 regulatory protein GntR family protein compare
BWI76_RS21115 +1.1 2.5 3-mercaptopyruvate sulfurtransferase compare
BWI76_RS23665 +1.1 3.6 2-deoxyribose-5-phosphate aldolase compare
BWI76_RS11110 +1.0 3.4 cell division protein YceG compare
BWI76_RS05075 +1.0 1.5 type II secretion system protein GspG compare
BWI76_RS18605 +1.0 1.7 oxidoreductase molybdopterin-binding protein compare
BWI76_RS02745 +1.0 2.0 hypothetical protein compare
BWI76_RS07325 +0.9 3.2 aminoimidazole riboside kinase compare
BWI76_RS27455 +0.9 3.2 DUF805 domain-containing protein compare
BWI76_RS23340 +0.9 2.4 transcriptional regulator compare
BWI76_RS07970 +0.9 2.8 hypothetical protein compare
BWI76_RS16040 +0.9 2.3 biotin-independent malonate decarboxylase subunit gamma compare
BWI76_RS25000 +0.9 1.6 malonate decarboxylase acyl carrier protein compare
BWI76_RS16805 +0.9 2.0 basic amino acid ABC transporter substrate-binding protein compare
BWI76_RS21470 +0.8 3.6 gluconolaconase compare
BWI76_RS08380 +0.8 1.5 endonuclease VIII compare
BWI76_RS13560 +0.8 1.0 amino acid ABC transporter substrate-binding subunit compare
BWI76_RS08275 +0.8 1.7 LexA regulated protein compare
BWI76_RS01905 +0.8 2.5 envelope stress response protein PspG compare
BWI76_RS13130 +0.8 2.3 phenylacetic acid degradation protein PaaD compare
BWI76_RS08640 +0.8 2.0 multidrug efflux pump-associated protein, AcrZ family compare
BWI76_RS16935 +0.8 1.2 shikimate dehydrogenase compare
BWI76_RS15015 +0.8 1.5 DUF2132 domain-containing protein compare
BWI76_RS16920 +0.8 1.0 3-(2,3-dihydroxyphenyl)propionate dioxygenase compare
BWI76_RS10755 +0.8 1.4 pyrimidine utilization flavin reductase protein F compare
BWI76_RS12545 +0.8 2.1 hypothetical protein compare
BWI76_RS20795 +0.8 1.4 ethanolamine catabolic microcompartment shell protein EutN compare
BWI76_RS13755 +0.8 1.6 hypothetical protein compare
BWI76_RS13330 +0.8 1.5 tellurite resistance methyltransferase TehB compare
BWI76_RS12235 +0.8 1.9 hypothetical protein compare
BWI76_RS17975 +0.8 3.7 tail-specific protease compare
BWI76_RS05235 +0.8 1.4 hypothetical protein compare
BWI76_RS09025 +0.8 1.8 GntR family transcriptional regulator compare
BWI76_RS26980 +0.7 1.6 cold-shock protein compare
BWI76_RS04145 +0.7 1.4 purine-nucleoside phosphorylase compare
BWI76_RS03045 +0.7 1.1 hypothetical protein compare
BWI76_RS23655 +0.7 4.7 DeoR family transcriptional regulator compare
BWI76_RS10955 +0.7 1.7 hypothetical protein compare
BWI76_RS11300 +0.7 1.1 cupin compare
BWI76_RS26890 +0.7 0.9 hypothetical protein compare
BWI76_RS13785 +0.7 1.6 ABC transporter permease compare
BWI76_RS15975 +0.7 0.9 hypothetical protein compare
BWI76_RS13105 +0.7 2.0 phenylacetate-CoA oxygenase subunit PaaJ compare
BWI76_RS15045 +0.7 2.2 LysR family transcriptional regulator compare
BWI76_RS19240 +0.7 1.4 ABC transporter substrate-binding protein compare
BWI76_RS11345 +0.7 2.4 LysR family transcriptional regulator compare
BWI76_RS11700 +0.7 1.2 hypothetical protein compare
BWI76_RS11125 +0.7 1.2 metal-dependent hydrolase compare
BWI76_RS08040 +0.7 2.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
BWI76_RS20730 +0.7 1.5 hypothetical protein compare
BWI76_RS07475 +0.7 0.8 DNA-binding transcriptional regulator RamA compare
BWI76_RS08645 +0.6 1.9 molybdate ABC transporter substrate-binding protein compare
BWI76_RS15950 +0.6 1.2 dethiobiotin synthase compare
BWI76_RS09730 +0.6 1.4 pyruvate formate lyase 1-activating protein compare
BWI76_RS06205 +0.6 2.7 recombination-associated protein RdgC compare
BWI76_RS25300 +0.6 1.2 hybrid sensor histidine kinase/response regulator compare
BWI76_RS22620 +0.6 1.5 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BWI76_RS22350 +0.6 1.8 hydrogenase nickel incorporation protein HypB compare
BWI76_RS10900 +0.6 2.5 putative oxidoreductase compare
BWI76_RS12780 +0.6 0.9 hypothetical protein compare
BWI76_RS09325 +0.6 1.5 putative bacteriophage tail completion protein compare
BWI76_RS17325 +0.6 2.2 nitrate reductase molybdenum cofactor assembly chaperone compare
BWI76_RS21245 +0.6 1.3 nitrogen regulatory protein P-II compare
BWI76_RS17880 +0.6 1.5 c-di-GMP phosphodiesterase compare
BWI76_RS24745 +0.6 2.9 membrane protein compare
BWI76_RS04715 +0.6 0.8 division/cell wall cluster transcriptional repressor MraZ compare
BWI76_RS24390 +0.6 1.8 hypothetical protein compare
BWI76_RS01780 +0.6 2.3 SPFH domain / Band 7 family protein compare
BWI76_RS22650 +0.6 1.8 lipoprotein NlpD compare
BWI76_RS08985 +0.6 2.2 threonine/homoserine exporter RhtA compare
BWI76_RS03835 +0.6 2.5 4-hydroxyphenylacetate catabolism regulatory protein HpaA compare
BWI76_RS04985 +0.6 1.2 aspartate 1-decarboxylase compare
BWI76_RS05425 +0.6 2.8 EEP domain-containing protein compare
BWI76_RS08625 +0.6 1.0 UDP-glucose 4-epimerase GalE compare
BWI76_RS20960 +0.6 1.7 ROK family protein compare
BWI76_RS08650 +0.6 1.4 molybdate ABC transporter permease compare
BWI76_RS19275 +0.6 2.1 DNA-binding response regulator compare
BWI76_RS08310 +0.6 1.7 potassium-transporting ATPase subunit C compare
BWI76_RS09635 +0.6 1.4 amino acid ABC transporter ATP-binding protein compare
BWI76_RS06980 +0.6 2.2 ureidoglycolate lyase compare
BWI76_RS15920 +0.6 1.0 hypothetical protein compare
BWI76_RS13060 +0.6 2.0 glutathione S-transferase compare
BWI76_RS14620 +0.6 1.6 acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase compare
BWI76_RS07550 +0.6 3.0 Zn-dependent hydrolase compare
BWI76_RS15210 +0.6 2.5 LysR family transcriptional regulator compare
BWI76_RS17660 +0.6 1.8 AraC/XylS familytranscription regulator compare
BWI76_RS09440 +0.6 1.6 hypothetical protein compare
BWI76_RS19530 +0.6 2.4 YIP1 family protein compare
BWI76_RS15800 +0.5 2.1 transcriptional regulator compare
BWI76_RS23050 +0.5 1.8 cobalt-precorrin-3B C(17)-methyltransferase compare
BWI76_RS15415 +0.5 2.6 LacI family transcriptional regulator compare
BWI76_RS15955 +0.5 1.7 transcriptional regulator compare
BWI76_RS27875 +0.5 0.5 membrane protein compare
BWI76_RS13275 +0.5 1.3 hypothetical protein compare
BWI76_RS21920 +0.5 2.1 amino acid ABC transporter substrate-binding protein compare
BWI76_RS19805 +0.5 1.9 Bcr/CflA family multidrug efflux MFS transporter compare
BWI76_RS10365 +0.5 1.7 class IV aminotransferase compare
BWI76_RS19215 +0.5 1.3 proline-specific peptidase compare
BWI76_RS04200 +0.5 2.6 phosphoglycerate mutase GpmB compare
BWI76_RS03105 +0.5 0.9 myo-inosose-2 dehydratase compare
BWI76_RS10730 +0.5 1.9 bifunctional glucose-1-phosphatase/inositol phosphatase compare
BWI76_RS13360 +0.5 2.4 benzoate transporter compare
BWI76_RS09860 +0.5 1.5 hypothetical protein compare
BWI76_RS15220 +0.5 1.6 L-lactate dehydrogenase compare
BWI76_RS05885 +0.5 1.5 anion permease compare
BWI76_RS08720 +0.5 1.0 imidazolonepropionase compare
BWI76_RS26875 +0.5 1.3 dipeptide ABC transporter permease DppC compare
BWI76_RS03815 +0.5 1.9 hypothetical protein compare
BWI76_RS13945 +0.5 1.8 lysine exporter protein LysE/YggA compare
BWI76_RS16675 +0.5 0.8 ABC transporter compare
BWI76_RS27630 +0.5 2.0 antibiotic biosynthesis monooxygenase compare
BWI76_RS03285 +0.5 2.4 hypothetical protein compare
BWI76_RS22430 +0.5 1.9 manganese/iron transporter ATP-binding protein compare
BWI76_RS02175 +0.5 3.1 ribose 5-phosphate isomerase B compare
BWI76_RS03605 +0.5 1.1 BMC domain-containing protein compare
BWI76_RS13085 +0.5 2.0 bifunctional oxepin-CoA hydrolase/3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase compare
BWI76_RS06520 +0.5 1.7 trigger factor compare
BWI76_RS14020 +0.5 2.1 aspartate aminotransferase family protein compare
BWI76_RS11820 +0.5 0.8 short-chain dehydrogenase/reductase SDR compare
BWI76_RS07725 +0.5 0.6 iron-enterobactin transporter permease compare
BWI76_RS27195 +0.5 2.6 alpha-hydroxy-acid oxidizing enzyme compare
BWI76_RS12570 +0.5 1.4 DUF1365 domain-containing protein compare
BWI76_RS26365 +0.5 2.8 branched chain amino acid ABC transporter substrate-binding protein compare
BWI76_RS13625 +0.5 1.5 hypothetical protein compare
BWI76_RS02560 +0.5 2.4 membrane protein compare
BWI76_RS02255 +0.5 1.6 chaperone-modulator protein CbpM compare
BWI76_RS22815 +0.5 3.6 hybrid sensor histidine kinase/response regulator compare
BWI76_RS16000 +0.5 0.8 multidrug transporter subunit MdtI compare
BWI76_RS25235 +0.5 2.8 calcium/sodium antiporter compare
BWI76_RS00865 +0.5 1.6 DNA-binding transcriptional regulator OxyR compare
BWI76_RS10285 +0.5 1.7 family 3 extracellular solute-binding protein compare
BWI76_RS08335 +0.5 1.2 deoxyribodipyrimidine photo-lyase compare
BWI76_RS15775 +0.5 1.4 replication protein compare
BWI76_RS20750 +0.5 0.8 carboxysome structural protein EutK compare
BWI76_RS01015 +0.5 2.7 nicotinamide riboside transporter PnuC compare
BWI76_RS14430 +0.5 1.5 peptidase C45 compare
BWI76_RS03625 +0.5 2.4 NAD(P)H quinone oxidoreductase compare
BWI76_RS14505 +0.5 1.1 salicylate synthase Irp9 compare
BWI76_RS10745 +0.5 0.7 hypothetical protein compare
BWI76_RS21955 +0.5 1.9 transferase compare
BWI76_RS07705 +0.5 1.5 enterochelin esterase compare
BWI76_RS16470 +0.5 0.9 transcriptional repressor NemR compare
BWI76_RS18335 +0.5 2.5 DNA-binding response regulator compare
BWI76_RS04655 +0.5 1.3 shikimate dehydrogenase compare
BWI76_RS16445 +0.5 1.7 auxiliary transporter membrane fusion protein compare
BWI76_RS24525 +0.5 1.7 urease accessory protein UreG compare
BWI76_RS10320 +0.5 1.8 alpha-glucosidase/alpha-galactosidase compare
BWI76_RS10060 +0.5 0.8 acylphosphatase compare
BWI76_RS25240 +0.5 2.2 D-arabinose 5-phosphate isomerase compare
BWI76_RS16790 +0.5 1.8 MFS transporter compare
BWI76_RS06130 +0.5 1.5 extensin family protein compare
BWI76_RS07995 +0.5 1.8 twin-arginine translocase subunit TatA compare
BWI76_RS20810 +0.5 1.6 ethanolamine utilization cobalamin adenosyltransferase compare
BWI76_RS20945 +0.5 1.9 uracil phosphoribosyltransferase compare
BWI76_RS07870 +0.5 2.9 carbohydrate kinase compare
BWI76_RS07675 +0.5 1.9 DeoR family transcriptional regulator compare
BWI76_RS13110 +0.5 1.1 phenylacetic acid degradation protein compare
BWI76_RS02050 +0.5 1.3 CidA/LrgA family protein compare
BWI76_RS11525 +0.5 1.2 HNH endonuclease compare
BWI76_RS16870 +0.5 1.9 LysR family transcriptional regulator compare
BWI76_RS16370 +0.5 1.7 electron transport complex subunit D compare
BWI76_RS14970 +0.5 1.0 pyrroline-5-carboxylate reductase compare
BWI76_RS06285 +0.5 1.3 peroxiredoxin compare
BWI76_RS19975 +0.5 1.7 sn-glycerol-3-phosphate dehydrogenase subunit C compare
BWI76_RS26045 +0.5 0.9 nitrite reductase small subunit compare
BWI76_RS14065 +0.5 0.8 hypothetical protein compare
BWI76_RS20210 +0.5 2.5 5'-deoxynucleotidase compare
BWI76_RS10430 +0.5 1.8 thiol:disulfide interchange protein DsbG compare
BWI76_RS17530 +0.5 0.9 hypothetical protein compare
BWI76_RS09320 +0.5 1.6 P2 phage tail completion protein R compare
BWI76_RS16225 +0.5 2.0 arginine:ornithine antiporter compare
BWI76_RS00715 +0.5 1.0 two-component sensor histidine kinase compare
BWI76_RS15795 +0.4 1.8 bacteriophage CII family protein compare
BWI76_RS02785 +0.4 1.6 AIG2 family protein compare
BWI76_RS00085 +0.4 2.6 hypothetical protein compare
BWI76_RS15030 +0.4 1.8 ABC transporter compare
BWI76_RS11990 +0.4 2.2 exoribonuclease II compare
BWI76_RS06375 +0.4 2.0 oxidoreductase compare
BWI76_RS14040 +0.4 1.1 thiaminase compare
BWI76_RS21290 +0.4 1.3 DNA-binding transcriptional regulator compare
BWI76_RS24575 +0.4 0.4 hypothetical protein compare
BWI76_RS20940 +0.4 0.8 uracil/xanthine transporter compare
BWI76_RS22965 +0.4 1.8 cysteine sulfinate desulfinase compare
BWI76_RS04995 +0.4 1.1 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
BWI76_RS16995 +0.4 2.4 Fe-S cluster assembly protein SufB compare
BWI76_RS19435 +0.4 1.5 hypothetical protein compare
BWI76_RS07230 +0.4 1.7 transcriptional regulator compare
BWI76_RS23670 +0.4 1.3 alkaline phosphatase compare
BWI76_RS06125 +0.4 1.6 D-alanine--D-alanine ligase A compare
BWI76_RS18550 +0.4 0.9 tRNA-Asn compare
BWI76_RS27015 +0.4 1.8 hypothetical protein compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source D-Ribose in Klebsiella michiganensis M5al

For carbon source D-Ribose across organisms