Experiment set4IT092 for Paraburkholderia bryophila 376MFSha3.1

Compare to:

LB in EcoFAB_3.5mL

200 most detrimental genes:

  gene name fitness t score description  
H281DRAFT_04835 +6.5 8.2 hypothetical protein compare
H281DRAFT_04831 +6.1 10.2 hypothetical protein compare
H281DRAFT_02429 +4.7 13.5 3-oxoacyl-[acyl-carrier protein] reductase compare
H281DRAFT_02425 +4.6 28.4 NAD-dependent aldehyde dehydrogenases compare
H281DRAFT_02423 +4.5 34.1 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II compare
H281DRAFT_02424 +4.5 28.6 Phenylacetate-coenzyme A ligase PaaK, adenylate-forming domain family compare
H281DRAFT_00317 +4.2 11.8 O-antigen ligase compare
H281DRAFT_02428 +4.1 16.8 hypothetical protein compare
H281DRAFT_02422 +4.0 10.0 hypothetical protein compare
H281DRAFT_02431 +3.8 25.9 transketolase subunit B compare
H281DRAFT_02427 +3.7 23.7 Choline dehydrogenase compare
H281DRAFT_02430 +3.7 22.3 transketolase subunit A compare
H281DRAFT_00886 +3.1 10.9 two component transcriptional regulator, winged helix family compare
H281DRAFT_04850 +2.5 6.9 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase compare
H281DRAFT_02421 +2.4 3.6 sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family compare
H281DRAFT_02749 +2.1 3.5 undecaprenyl-diphosphatase compare
H281DRAFT_02426 +2.0 3.8 3-hydroxyacyl-[acyl-carrier-protein] dehydratase compare
H281DRAFT_02926 +2.0 13.6 diguanylate cyclase/phosphodiesterase compare
H281DRAFT_00316 +1.8 7.3 ADP-heptose:LPS heptosyltransferase compare
H281DRAFT_00933 +1.7 10.4 hypothetical protein compare
H281DRAFT_04851 +1.7 5.3 NDP-sugar epimerase, includes UDP-GlcNAc-inverting 4,6-dehydratase FlaA1 and capsular polysaccharide biosynthesis protein EpsC compare
H281DRAFT_04849 +1.5 3.1 UDP-glucose 4-epimerase compare
H281DRAFT_02683 +1.4 1.8 xanthine dehydrogenase accessory factor compare
H281DRAFT_01654 +1.4 1.5 3-phenylpropionate/cinnamic acid dioxygenase, small subunit compare
H281DRAFT_00315 +1.4 7.5 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_04848 +1.4 2.6 hypothetical protein compare
H281DRAFT_01184 +1.4 1.6 3-oxoacyl-[acyl-carrier protein] reductase compare
H281DRAFT_03095 +1.3 1.7 membrane fusion protein, multidrug efflux system compare
H281DRAFT_00896 +1.3 3.2 ATP-dependent Clp protease proteolytic subunit ClpP compare
H281DRAFT_06056 +1.2 8.4 histidine kinase (EC 2.7.13.3) compare
H281DRAFT_00255 +1.2 2.8 hypothetical protein compare
H281DRAFT_06120 +1.2 1.3 hypothetical protein compare
H281DRAFT_00658 +1.2 1.9 transcriptional regulator, IclR family compare
H281DRAFT_05748 +1.2 7.4 response regulator receiver protein compare
H281DRAFT_03790 +1.1 1.8 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
H281DRAFT_01390 +1.1 1.7 hypothetical protein compare
H281DRAFT_02503 +1.1 2.3 Peroxiredoxin compare
H281DRAFT_05214 +1.1 2.5 transcriptional regulator, LacI family compare
H281DRAFT_04771 +1.1 2.6 transcriptional regulator, AraC family compare
H281DRAFT_02702 +1.1 2.3 dihydroxyacetone kinase DhaK subunit compare
H281DRAFT_01403 +1.1 3.6 hypothetical protein compare
H281DRAFT_04857 +1.0 1.7 hypothetical protein compare
H281DRAFT_04990 +1.0 3.1 type III secretion translocon protein HrpF compare
H281DRAFT_00348 +1.0 2.3 membrane fusion protein, multidrug efflux system compare
H281DRAFT_03159 +1.0 1.4 hypothetical protein compare
H281DRAFT_04869 +1.0 2.2 imidazolonepropionase compare
H281DRAFT_00379 +1.0 1.3 dihydroorotate oxidase B, catalytic subunit /dihydrouracil dehydrogenase (NAD+) /dihydropyrimidine dehydrogenase (NADP+) compare
H281DRAFT_03820 +1.0 1.5 methylated-DNA-[protein]-cysteine S-methyltransferase compare
H281DRAFT_03069 +1.0 1.5 Uncharacterized conserved protein compare
H281DRAFT_00946 +1.0 2.2 protein-tyrosine phosphatase compare
H281DRAFT_01088 +1.0 1.6 Lactate dehydrogenase compare
H281DRAFT_04858 +1.0 1.3 hypothetical protein compare
H281DRAFT_04792 +1.0 1.3 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_01436 +0.9 1.7 NTE family protein compare
H281DRAFT_06511 +0.9 1.3 reactive intermediate/imine deaminase compare
H281DRAFT_06477 +0.9 1.4 transcriptional regulator, AraC family compare
H281DRAFT_04996 +0.9 2.0 type III secretion protein C compare
H281DRAFT_05745 +0.9 4.4 MCP methyltransferase, CheR-type compare
H281DRAFT_03822 +0.9 2.4 monosaccharide ABC transporter substrate-binding protein, CUT2 family compare
H281DRAFT_05983 +0.9 1.7 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_03426 +0.9 1.4 cytochrome bo3 quinol oxidase subunit 2 (EC 1.10.3.-) compare
H281DRAFT_03881 +0.9 4.1 isoquinoline 1-oxidoreductase, alpha subunit compare
H281DRAFT_03999 +0.9 6.8 porin, GBP family compare
H281DRAFT_02791 +0.9 1.3 apolipoprotein D and lipocalin family protein compare
H281DRAFT_03713 +0.9 2.0 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_06285 +0.9 1.8 3-dehydroquinate dehydratase compare
H281DRAFT_05438 +0.9 2.0 transcriptional regulator, IclR family compare
H281DRAFT_00298 +0.9 1.6 hypothetical protein compare
H281DRAFT_01927 +0.9 7.2 RNA polymerase, sigma 54 subunit, RpoN/SigL compare
H281DRAFT_01830 +0.9 1.2 transcriptional regulator, LacI family compare
H281DRAFT_03047 +0.9 1.8 protein of unknown function (DUF4148) compare
H281DRAFT_02818 +0.9 2.0 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
H281DRAFT_02696 +0.9 2.2 glutathione S-transferase compare
H281DRAFT_01633 +0.8 2.9 hypothetical protein compare
H281DRAFT_00240 +0.8 6.1 two component, sigma54 specific, transcriptional regulator, NtrC subfamily, Fis family compare
H281DRAFT_05791 +0.8 2.8 flagellar biosynthesis protein compare
H281DRAFT_02581 +0.8 1.3 3-oxoacyl-[acyl-carrier protein] reductase compare
H281DRAFT_02700 +0.8 1.5 feruloyl esterase compare
H281DRAFT_00654 +0.8 2.1 putative spermidine/putrescine transport system substrate-binding protein compare
H281DRAFT_03460 +0.8 1.0 Protein of unknown function (DUF2950) compare
H281DRAFT_02626 +0.8 2.4 hypothetical protein compare
H281DRAFT_02753 +0.8 1.6 Predicted dehydrogenase compare
H281DRAFT_05908 +0.8 1.8 hypothetical protein compare
H281DRAFT_04997 +0.8 1.2 AraC-type DNA-binding protein compare
H281DRAFT_00722 +0.8 1.2 transcriptional regulator, Crp/Fnr family compare
H281DRAFT_05273 +0.8 1.4 Predicted arabinose efflux permease, MFS family compare
H281DRAFT_02942 +0.8 1.2 glycerate dehydrogenase compare
H281DRAFT_06310 +0.8 3.7 Barstar (barnase inhibitor) compare
H281DRAFT_00236 +0.8 4.0 sigma54 specific transcriptional regulator, Fis family compare
H281DRAFT_03549 +0.8 2.6 reactive intermediate/imine deaminase compare
H281DRAFT_00487 +0.8 0.9 bacterial peptide chain release factor 2 (bRF-2) compare
H281DRAFT_01766 +0.8 1.4 cytochrome c oxidase subunit 2 compare
H281DRAFT_03733 +0.8 1.2 carbohydrate ABC transporter ATP-binding protein, CUT1 family compare
H281DRAFT_01632 +0.8 4.8 LuxR family transcriptional regulator, quorum-sensing transcription factor LasR compare
H281DRAFT_01823 +0.8 4.1 transcriptional regulator, LysR family compare
H281DRAFT_05465 +0.8 2.2 hypothetical protein compare
H281DRAFT_05807 +0.7 5.6 hypothetical protein compare
H281DRAFT_02952 +0.7 1.9 fructuronate reductase compare
H281DRAFT_06135 +0.7 1.2 hypothetical protein compare
H281DRAFT_05079 +0.7 3.0 small conductance mechanosensitive channel compare
H281DRAFT_01095 +0.7 1.2 Glyoxylase, beta-lactamase superfamily II compare
H281DRAFT_00377 +0.7 1.3 N-carbamoyl-L-amino-acid hydrolase compare
H281DRAFT_03765 +0.7 1.6 Uncharacterized conserved protein YgbK, DUF1537 family compare
H281DRAFT_01033 +0.7 1.0 DNA-binding transcriptional regulator, LysR family compare
H281DRAFT_04968 +0.7 1.9 Hemin uptake protein hemP compare
H281DRAFT_04656 +0.7 2.8 Predicted transcriptional regulator compare
H281DRAFT_01597 +0.7 0.9 3-oxoadipate CoA-transferase alpha subunit compare
H281DRAFT_05742 +0.7 3.8 CheA signal transduction histidine kinase compare
H281DRAFT_00359 +0.7 1.4 Acyl-CoA dehydrogenase compare
H281DRAFT_04786 +0.7 3.8 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_04368 +0.7 4.7 two component, sigma54 specific, transcriptional regulator, NtrC subfamily, Fis family compare
H281DRAFT_01514 +0.7 1.7 ribose 1,5-bisphosphokinase compare
H281DRAFT_02736 +0.7 1.9 uncharacterized peroxidase-related enzyme compare
H281DRAFT_05005 +0.7 1.2 type III secretion protein HrpB1 compare
H281DRAFT_00728 +0.7 1.6 Predicted N-acyltransferase, GNAT family compare
H281DRAFT_02566 +0.7 1.3 Glycine/D-amino acid oxidase (deaminating) compare
H281DRAFT_06355 +0.7 2.3 4-oxalomesaconate hydratase compare
H281DRAFT_05545 +0.7 1.1 NitT/TauT family transport system ATP-binding protein compare
H281DRAFT_05482 +0.7 2.0 hypothetical protein compare
H281DRAFT_00998 +0.7 0.8 outer membrane protein, multidrug efflux system compare
H281DRAFT_02720 +0.7 1.2 GAF domain-containing protein compare
H281DRAFT_01145 +0.7 1.7 hopanoid biosynthesis associated protein HpnK compare
H281DRAFT_01305 +0.7 1.9 hypothetical protein compare
H281DRAFT_00397 +0.7 1.4 GreA/GreB family elongation factor compare
H281DRAFT_04175 +0.7 2.3 Carbon monoxide dehydrogenase subunit G compare
H281DRAFT_00285 +0.7 2.6 PhnB protein compare
H281DRAFT_00695 +0.7 1.5 choline-sulfatase compare
H281DRAFT_05219 +0.7 1.6 transcriptional regulator, LysR family compare
H281DRAFT_06011 +0.7 1.1 SSU ribosomal protein S21P compare
H281DRAFT_01457 +0.7 1.6 hypothetical protein compare
H281DRAFT_06500 +0.7 1.6 Lactate dehydrogenase compare
H281DRAFT_02433 +0.7 5.1 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
H281DRAFT_01183 +0.7 0.8 Sugar lactone lactonase YvrE compare
H281DRAFT_03462 +0.6 1.4 membrane protein DedA, SNARE-associated domain compare
H281DRAFT_00130 +0.6 1.7 Predicted secreted protein compare
H281DRAFT_06536 +0.6 3.0 rare lipoprotein A compare
H281DRAFT_01534 +0.6 2.4 tartrate dehydrogenase/decarboxylase / D-malate dehydrogenase compare
H281DRAFT_04958 +0.6 1.5 glutamate racemase compare
H281DRAFT_02532 +0.6 0.9 Sugar phosphate isomerase/epimerase compare
H281DRAFT_01270 +0.6 2.4 Uncharacterized conserved protein YbjT, contains NAD(P)-binding and DUF2867 domains compare
H281DRAFT_04628 +0.6 1.3 FdhD protein compare
H281DRAFT_06003 +0.6 1.6 Pimeloyl-ACP methyl ester carboxylesterase compare
H281DRAFT_06164 +0.6 1.6 protein of unknown function (DUF4400) compare
H281DRAFT_03906 +0.6 2.6 D-methionine transport system ATP-binding protein compare
H281DRAFT_00102 +0.6 1.2 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
H281DRAFT_01319 +0.6 1.0 Uncharacterized protein, UPF0264 family compare
H281DRAFT_04759 +0.6 1.2 hypothetical protein compare
H281DRAFT_01400 +0.6 2.5 cytochrome b561 compare
H281DRAFT_02559 +0.6 1.6 hypothetical protein compare
H281DRAFT_04993 +0.6 1.3 hypothetical protein compare
H281DRAFT_06502 +0.6 1.4 transcriptional regulator, LysR family compare
H281DRAFT_04779 +0.6 1.9 colanic acid biosynthesis glycosyl transferase WcaI compare
H281DRAFT_01965 +0.6 1.3 hypothetical protein compare
H281DRAFT_03326 +0.6 2.4 PAS domain S-box-containing protein compare
H281DRAFT_03631 +0.6 2.7 hypothetical protein compare
H281DRAFT_02319 +0.6 2.4 hypothetical protein compare
H281DRAFT_04905 +0.6 1.6 outer membrane transport energization protein ExbB compare
H281DRAFT_06555 +0.6 1.6 hypothetical protein compare
H281DRAFT_02946 +0.6 2.2 D-galactonate transporter compare
H281DRAFT_01838 +0.6 2.0 regulator RcnB of Ni and Co efflux compare
H281DRAFT_06567 +0.6 0.8 hypothetical protein compare
H281DRAFT_03303 +0.6 0.9 NAD+ synthase (glutamine-hydrolysing) compare
H281DRAFT_03010 +0.6 1.9 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) compare
H281DRAFT_02444 +0.6 1.2 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED compare
H281DRAFT_00378 +0.6 0.6 glutamate synthase (NADPH/NADH) small chain compare
H281DRAFT_01919 +0.6 1.5 Threonine/homoserine/homoserine lactone efflux protein compare
H281DRAFT_02193 +0.6 0.9 hypothetical protein compare
H281DRAFT_05698 +0.6 2.0 protein of unknown function (DUF748) compare
H281DRAFT_05364 +0.6 4.5 type VI secretion system protein ImpC compare
H281DRAFT_00817 +0.6 3.3 ATP-dependent Clp protease ATP-binding subunit ClpB compare
H281DRAFT_05744 +0.6 1.1 methyl-accepting chemotaxis sensory transducer with TarH sensor compare
H281DRAFT_06039 +0.6 1.3 molybdate transport system ATP-binding protein compare
H281DRAFT_00508 +0.6 3.2 Methyltransferase domain-containing protein compare
H281DRAFT_04331 +0.6 2.8 L-lactate dehydrogenase complex protein LldG compare
H281DRAFT_05870 +0.6 2.7 amino acid ABC transporter substrate-binding protein, PAAT family compare
H281DRAFT_00201 +0.6 1.2 hypothetical protein compare
H281DRAFT_05901 +0.6 0.7 Cupin domain-containing protein compare
H281DRAFT_04051 +0.6 0.8 transcriptional regulator, RpiR family compare
H281DRAFT_04448 +0.6 2.0 L-threonine aldolase compare
H281DRAFT_03144 +0.6 1.5 putative phosphoesterase compare
H281DRAFT_02936 +0.6 2.4 nitrilase compare
H281DRAFT_03695 +0.6 1.6 glutathione S-transferase compare
H281DRAFT_04025 +0.6 3.4 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) compare
H281DRAFT_03061 +0.6 1.7 hypothetical protein compare
H281DRAFT_04629 +0.6 1.7 conserved hypothetical protein compare
H281DRAFT_02878 +0.6 1.7 response regulator receiver sensor signal transduction histidine kinase compare
H281DRAFT_06442 +0.6 1.9 cytochrome d ubiquinol oxidase subunit II compare
H281DRAFT_01896 +0.6 1.9 EcsC protein family protein compare
H281DRAFT_04728 +0.6 2.3 type IV fimbrial biogenesis protein FimT compare
H281DRAFT_00759 +0.6 2.3 sulfonate transport system permease protein compare
H281DRAFT_03488 +0.6 2.0 Predicted amidohydrolase compare
H281DRAFT_05743 +0.6 1.1 CheW protein compare
H281DRAFT_03409 +0.6 0.8 Protein of unknown function (DUF3072) compare
H281DRAFT_02295 +0.6 1.7 hypothetical protein compare
H281DRAFT_02880 +0.6 2.3 chemotaxis protein methyltransferase CheR compare
H281DRAFT_02611 +0.6 1.9 transcriptional regulator, RpiR family compare
H281DRAFT_00888 +0.6 1.4 phytoene synthase compare
H281DRAFT_03896 +0.6 1.8 hypothetical protein compare
H281DRAFT_02922 +0.6 0.8 transcriptional regulator, AraC family compare
H281DRAFT_06531 +0.5 1.2 cob(II)yrinic acid a,c-diamide reductase /5,6-dimethylbenzimidazole synthase compare


Specific Phenotypes

For 3 genes in this experiment