Experiment set4IT092 for Paraburkholderia bryophila 376MFSha3.1
LB in EcoFAB_3.5mL
Group: ecofabMedia: LB
Culturing: Burk376_ML3, EcoFAB_3.5mL, Aerobic, at 30 (C), shaken=0 rpm
By: Adam on 5/2/18
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride
Specific Phenotypes
For 3 genes in this experiment
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Calvin-Benson cycle | 1 |
| Pentose phosphate pathway | 1 |
| Respiratory dehydrogenases 1 | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Pentose phosphate pathway
- Carbon fixation in photosynthetic organisms
- Biosynthesis of ansamycins
- Biosynthesis of phenylpropanoids
- Biosynthesis of alkaloids derived from shikimate pathway
- Biosynthesis of plant hormones
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| pentose phosphate pathway (partial) | 3 | 3 | 2 |
| pentose phosphate pathway (non-oxidative branch) I | 5 | 5 | 2 |
| pentose phosphate pathway (non-oxidative branch) II | 6 | 5 | 2 |
| sulfoquinovose degradation V | 7 | 2 | 2 |
| pentose phosphate pathway | 8 | 8 | 2 |
| formaldehyde assimilation II (assimilatory RuMP Cycle) | 9 | 6 | 2 |
| Rubisco shunt | 10 | 10 | 2 |
| formaldehyde assimilation III (dihydroxyacetone cycle) | 12 | 11 | 2 |
| Calvin-Benson-Bassham cycle | 13 | 11 | 2 |
| superpathway of glucose and xylose degradation | 17 | 16 | 2 |
| oxygenic photosynthesis | 17 | 12 | 2 |
| ethene biosynthesis V (engineered) | 25 | 19 | 2 |
| photosynthetic 3-hydroxybutanoate biosynthesis (engineered) | 26 | 19 | 2 |
| 1-butanol autotrophic biosynthesis (engineered) | 27 | 20 | 2 |
| Bifidobacterium shunt | 15 | 14 | 1 |