Experiment set4IT092 for Bifidobacterium breve UCC2003

Compare to:

Recovery broth

200 most important genes:

  gene name fitness t score description  
BBR_RS10255 -7.2 -5.0 chromosomal replication initiator protein DnaA compare
BBR_RS12370 -4.2 -2.1 cell division protein compare
BBR_RS12545 -3.5 -6.7 DUF4012 domain-containing protein compare
BBR_RS10625 -3.0 -3.5 FHA domain-containing protein compare
BBR_RS19450 -3.0 -2.0 GTPase ObgE compare
BBR_RS15070 -2.8 -5.6 endolytic transglycosylase MltG compare
BBR_RS14140 -2.7 -3.1 Ppx/GppA family phosphatase compare
BBR_RS12235 -2.6 -1.9 hypothetical protein compare
BBR_RS21015 -2.6 -3.5 hypothetical protein compare
BBR_RS16425 -2.6 -3.4 DUF3071 domain-containing protein compare
BBR_RS16675 -2.4 -5.2 prephenate dehydrogenase/arogenate dehydrogenase family protein compare
BBR_RS16750 -2.3 -3.5 ParA family protein compare
BBR_RS13030 -2.3 -1.6 cell division ATP-binding protein FtsE compare
BBR_RS11720 -2.3 -6.6 DUF2469 domain-containing protein compare
BBR_RS15915 -2.3 -1.5 type II toxin-antitoxin system antitoxin, RelB/DinJ family compare
BBR_RS19760 -2.3 -1.9 polysaccharide ABC transporter ATPase compare
BBR_RS10620 -2.3 -5.6 phosphoprotein phosphatase compare
BBR_RS13070 -2.3 -1.9 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
BBR_RS13805 -2.2 -3.9 hypothetical protein compare
BBR_RS19160 -2.2 -1.4 phosphate ABC transporter permease subunit PstC compare
BBR_RS15055 -2.1 -3.8 hypothetical protein compare
BBR_RS15080 -2.1 -2.8 chorismate synthase compare
BBR_RS19125 -2.1 -8.3 hypothetical protein compare
BBR_RS20465 -2.1 -8.4 chromosome partitioning protein compare
BBR_RS20480 -2.1 -1.4 membrane protein compare
BBR_RS19190 -2.0 -8.1 3-deoxy-7-phosphoheptulonate synthase compare
BBR_RS13035 -2.0 -1.3 ABC transporter permease compare
BBR_RS19815 -1.9 -14.8 ABC transporter permease compare
BBR_RS13040 -1.9 -1.3 CHAP domain-containing protein compare
BBR_RS16490 -1.8 -4.0 polyprenyl synthase compare
BBR_RS10940 -1.8 -10.7 DedA family protein compare
BBR_RS19820 -1.7 -13.2 ATP-binding protein of ABC transporter system compare
BBR_RS14215 -1.7 -2.2 peptidase compare
BBR_RS18050 -1.7 -3.0 threonylcarbamoyl-AMP synthase compare
BBR_RS13635 -1.7 -7.4 carbamoyl-phosphate synthase large subunit compare
BBR_RS14190 -1.7 -7.1 transcriptional regulator compare
BBR_RS20955 -1.7 -2.5 hypothetical protein compare
BBR_RS16625 -1.7 -5.0 DUF3710 domain-containing protein compare
BBR_RS18690 -1.7 -6.6 diacylglycerol kinase compare
BBR_RS14205 -1.7 -2.7 hypothetical protein compare
BBR_RS19120 -1.6 -8.5 helicase compare
BBR_RS18565 -1.6 -1.5 CHAP domain-containing protein compare
BBR_RS12500 -1.6 -1.4 sugar ABC transporter permease compare
BBR_RS11540 -1.6 -1.5 DUF1727 domain-containing protein compare
BBR_RS15085 -1.6 -1.7 3-dehydroquinate synthase compare
BBR_RS13630 -1.5 -5.7 carbamoyl-phosphate synthase small subunit compare
BBR_RS20910 -1.5 -2.7 DUF1829 domain-containing protein compare
BBR_RS20460 -1.5 -3.9 chromosome partitioning protein ParB compare
BBR_RS19905 -1.5 -1.3 methionine--tRNA ligase compare
BBR_RS13490 -1.5 -1.8 30S ribosomal protein S7 compare
BBR_RS12905 -1.4 -2.1 galactose-1-phosphate uridylyltransferase compare
BBR_RS17440 -1.4 -2.1 DUF3027 domain-containing protein compare
BBR_RS12590 -1.4 -1.9 beta-1,6-N-acetylglucosaminyltransferase compare
BBR_RS17500 -1.4 -7.2 hypothetical protein compare
BBR_RS19465 -1.4 -4.2 ribonuclease E/G compare
BBR_RS14265 -1.4 -4.3 Solute-binding protein of ABC transporter system for metals compare
BBR_RS18180 -1.4 -8.3 ATP-dependent zinc metalloprotease FtsH compare
BBR_RS17510 -1.4 -5.3 VWA domain-containing protein compare
BBR_RS14370 -1.3 -4.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
BBR_RS18215 -1.3 -6.7 AI-2E family transporter compare
BBR_RS16640 -1.3 -3.5 ABC transporter permease compare
BBR_RS14540 -1.2 -2.8 Na+/H+ antiporter NhaA compare
BBR_RS17505 -1.2 -7.0 VWA domain-containing protein compare
BBR_RS15435 -1.2 -3.4 dihydroorotase compare
BBR_RS15455 -1.2 -1.6 orotate phosphoribosyltransferase compare
BBR_RS10755 -1.2 -4.7 adenylosuccinate synthase compare
BBR_RS12310 -1.2 -0.8 signal recognition particle protein compare
BBR_RS17490 -1.2 -8.0 MoxR family ATPase compare
BBR_RS12355 -1.2 -3.6 ribonuclease III compare
BBR_RS13770 -1.2 -2.6 DNA repair protein RecO compare
BBR_RS16960 -1.1 -2.4 transcriptional regulator MraZ compare
BBR_RS19270 -1.1 -1.3 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase compare
BBR_RS16965 -1.1 -0.8 ATP-dependent DNA helicase compare
BBR_RS15050 -1.1 -2.5 DUF948 domain-containing protein compare
BBR_RS19155 -1.1 -5.7 phosphate ABC transporter, permease protein PstA compare
BBR_RS15520 -1.1 -3.0 shikimate 5-dehydrogenase compare
BBR_RS17515 -1.1 -5.8 hypothetical protein compare
BBR_RS18725 -1.1 -2.2 ribonuclease HI compare
BBR_RS12605 -1.1 -1.9 glycosyltransferase family 2 protein compare
BBR_RS10580 -1.1 -1.7 septation inhibitor protein compare
BBR_RS14130 -1.1 -1.6 septum formation initiator family protein compare
BBR_RS17495 -1.0 -6.6 DUF58 domain-containing protein compare
BBR_RS11590 -1.0 -0.9 30S ribosomal protein S18 compare
BBR_RS19540 -1.0 -1.8 homoserine dehydrogenase compare
BBR_RS11970 -1.0 -2.7 Phage transcriptional regulator compare
BBR_RS16845 -1.0 -1.3 bifunctional folylpolyglutamate synthase/dihydrofolate synthase compare
BBR_RS14200 -1.0 -2.9 WhiB family transcriptional regulator compare
BBR_RS12045 -1.0 -2.6 hypothetical protein compare
BBR_RS16060 -0.9 -1.9 hypothetical protein compare
BBR_RS19165 -0.9 -1.9 phosphate ABC transporter substrate-binding protein PstS compare
BBR_RS18990 -0.9 -1.4 AbrB family transcriptional regulator compare
BBR_RS16635 -0.9 -1.9 ABC transporter ATP-binding protein compare
BBR_RS19755 -0.9 -5.9 glycosyl transferase compare
BBR_RS11175 -0.9 -6.3 penicillin-binding protein compare
BBR_RS15090 -0.9 -1.0 type II 3-dehydroquinate dehydratase compare
BBR_RS14070 -0.9 -3.5 threonine synthase (EC 4.2.3.1) (from data) compare
BBR_RS19325 -0.9 -2.0 hypothetical protein compare
BBR_RS15440 -0.9 -2.8 orotidine-5'-phosphate decarboxylase compare
BBR_RS12305 -0.9 -3.1 endonuclease/exonuclease/phosphatase family protein compare
BBR_RS16985 -0.8 -2.8 transcriptional repressor LexA compare
BBR_RS18220 -0.8 -5.4 glycosyltransferase family 2 protein compare
BBR_RS14280 -0.8 -1.7 dephospho-CoA kinase compare
BBR_RS12940 -0.8 -5.0 hypothetical protein compare
BBR_RS13450 -0.8 -2.0 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BBR_RS14615 -0.8 -3.6 histidine kinase compare
BBR_RS15650 -0.8 -1.0 Holliday junction resolvase compare
BBR_RS17640 -0.8 -1.1 DNA-directed RNA polymerase subunit omega compare
BBR_RS19535 -0.8 -6.1 homoserine kinase (EC 2.7.1.39) (from data) compare
BBR_RS19740 -0.8 -6.8 DUF2142 domain-containing protein compare
BBR_RS21170 -0.8 -4.3 membrane protein insertion efficiency factor YidD compare
BBR_RS19355 -0.8 -1.0 tRNA-Gly compare
BBR_RS13455 -0.7 -2.3 formate-dependent phosphoribosylglycinamide formyltransferase compare
BBR_RS16655 -0.7 -2.4 tyrosine recombinase XerC compare
BBR_RS14230 -0.7 -2.8 HAMP domain-containing histidine kinase compare
BBR_RS12785 -0.7 -1.3 transcriptional regulator compare
BBR_RS15425 -0.7 -1.3 aspartate carbamoyltransferase compare
BBR_RS13640 -0.7 -2.9 orotidine-5'-phosphate decarboxylase compare
BBR_RS14625 -0.7 -3.4 pyrroline-5-carboxylate reductase compare
BBR_RS11185 -0.7 -1.8 type I DNA topoisomerase compare
BBR_RS14075 -0.7 -3.9 glutamate-5-semialdehyde dehydrogenase compare
BBR_RS18745 -0.7 -1.2 bifunctional riboflavin kinase/FMN adenylyltransferase compare
BBR_RS20935 -0.7 -2.5 hypothetical protein compare
BBR_RS20960 -0.7 -2.1 hypothetical protein compare
BBR_RS16035 -0.7 -2.0 hypothetical protein compare
BBR_RS15230 -0.7 -2.4 elongation factor 4 compare
BBR_RS16955 -0.7 -1.4 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
BBR_RS20440 -0.7 -2.8 NUDIX hydrolase compare
BBR_RS11180 -0.7 -5.6 phosphatase PAP2 family protein compare
BBR_RS13980 -0.7 -3.3 HD domain-containing protein compare
BBR_RS20415 -0.6 -5.6 G5 domain-containing protein compare
BBR_RS15450 -0.6 -2.1 dihydroorotate dehydrogenase compare
BBR_RS19435 -0.6 -1.0 pyridoxal phosphate-dependent aminotransferase compare
BBR_RS18735 -0.6 -3.4 hypothetical protein compare
BBR_RS17290 -0.6 -3.0 Fused ATP-binding protein and permease of ABC transporter compare
BBR_RS12980 -0.6 -4.6 ATP-dependent DNA helicase UvrD/REP family compare
BBR_RS14240 -0.6 -2.6 1,4-alpha-glucan branching protein GlgB compare
BBR_RS11510 -0.6 -0.6 signal recognition particle-docking protein FtsY compare
BBR_RS15675 -0.6 -2.8 ADP-forming succinate--CoA ligase subunit beta compare
BBR_RS16275 -0.6 -1.0 leucine--tRNA ligase compare
BBR_RS15015 -0.6 -2.3 cytidine deaminase compare
BBR_RS12770 -0.6 -1.8 hypothetical protein compare
BBR_RS10660 -0.5 -4.7 esterase compare
BBR_RS19795 -0.5 -4.7 hypothetical protein compare
BBR_RS12975 -0.5 -3.8 ATP-dependent DNA helicase UvrD/REP family compare
BBR_RS15685 -0.5 -3.6 hypothetical protein compare
BBR_RS10570 -0.5 -2.1 hypothetical protein compare
BBR_RS13735 -0.5 -0.8 Lon protease compare
BBR_RS20455 -0.5 -3.0 thioredoxin-disulfide reductase compare
BBR_RS20865 -0.5 -1.4 glycogen phosphorylase compare
BBR_RS10265 -0.5 -3.4 DNA replication and repair protein RecF compare
BBR_RS14210 -0.5 -0.3 hypothetical protein compare
BBR_RS12835 -0.5 -2.3 thioredoxin compare
BBR_RS16975 -0.5 -1.5 transcriptional repressor NrdR compare
BBR_RS16745 -0.5 -3.1 segregation/condensation protein A compare
BBR_RS13820 -0.5 -0.9 ATP-binding protein compare
BBR_RS19170 -0.5 -3.9 DNA-binding response regulator compare
BBR_RS20475 -0.5 -4.2 KH domain-containing protein compare
BBR_RS15680 -0.5 -2.1 succinate--CoA ligase subunit alpha compare
BBR_RS16540 -0.5 -2.4 XRE family transcriptional regulator compare
BBR_RS16555 -0.5 -0.4 DNA translocase FtsK compare
BBR_RS14475 -0.5 -2.9 formate C-acetyltransferase compare
BBR_RS16430 -0.5 -1.0 nucleotide pyrophosphatase compare
BBR_RS13830 -0.5 -0.6 DUF4191 domain-containing protein compare
BBR_RS15655 -0.5 -1.6 Holliday junction branch migration protein RuvA compare
BBR_RS19350 -0.5 -1.2 tRNA-Val compare
BBR_RS15670 -0.5 -1.3 adenine phosphoribosyltransferase compare
BBR_RS21050 -0.4 -1.7 hypothetical protein compare
BBR_RS19260 -0.4 -3.7 hypothetical protein compare
BBR_RS14880 -0.4 -2.4 ATP-dependent helicase compare
BBR_RS19095 -0.4 -3.5 magnesium transporter compare
BBR_RS16610 -0.4 -1.7 hypothetical protein compare
BBR_RS21040 -0.4 -1.1 transcription factor WhiB compare
BBR_RS17040 -0.4 -1.7 hypothetical protein compare
BBR_RS20470 -0.4 -3.4 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
BBR_RS12720 -0.4 -0.9 hypothetical protein compare
BBR_RS11470 -0.4 -0.5 6-phosphogluconolactonase compare
BBR_RS13375 -0.4 -1.9 phosphoribosylformylglycinamidine cyclo-ligase compare
BBR_RS14000 -0.4 -2.6 hypothetical protein compare
BBR_RS20400 -0.4 -3.8 serine/threonine protein kinase compare
BBR_RS19750 -0.4 -3.6 LTA synthase family protein compare
BBR_RS15010 -0.4 -2.0 glutamine amidotransferase compare
BBR_RS18175 -0.4 -0.7 GTP cyclohydrolase I FolE compare
BBR_RS19105 -0.4 -2.1 FmdB family transcriptional regulator compare
BBR_RS19445 -0.4 -3.4 glutamate 5-kinase compare
BBR_RS10615 -0.4 -2.2 FtsW/RodA/SpoVE family cell cycle protein compare
BBR_RS12860 -0.4 -3.0 DUF2183 domain-containing protein compare
BBR_RS15660 -0.4 -1.7 Holliday junction branch migration DNA helicase RuvB compare
BBR_RS12555 -0.4 -2.3 protein-tyrosine-phosphatase compare
BBR_RS15935 -0.4 -1.9 hypothetical protein compare
BBR_RS20885 -0.4 -0.5 hypothetical protein compare
BBR_RS14700 -0.4 -1.2 type II toxin-antitoxin system PemK/MazF family toxin compare
BBR_RS20435 -0.4 -0.4 CCA tRNA nucleotidyltransferase compare
BBR_RS20695 -0.4 -1.4 hypothetical protein compare
BBR_RS11645 -0.4 -1.7 integrase compare
BBR_RS14985 -0.4 -0.7 ATP-dependent DNA helicase PcrA compare
BBR_RS15880 -0.4 -1.1 hypothetical protein compare
BBR_RS17480 -0.4 -1.7 hypothetical protein compare
BBR_RS15755 -0.3 -0.8 hypothetical protein compare
BBR_RS12810 -0.3 -2.5 hypothetical protein compare
BBR_RS13960 -0.3 -1.0 thiamine biosynthesis protein ThiS compare


Specific Phenotypes

None in this experiment

For Bifidobacterium breve UCC2003 in stress control experiments