Experiment set4IT091 for Pseudomonas fluorescens FW300-N1B4

Compare to:

D-Alanine nitrogen source

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_6 -4.3 -4.2 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf1N1B4_5666 -3.9 -3.7 Oxidoreductase probably involved in sulfite reduction compare
Pf1N1B4_2880 -3.8 -12.4 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf1N1B4_2143 -3.8 -13.1 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system conserved
Pf1N1B4_15 -3.4 -3.9 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf1N1B4_1534 -3.4 -17.4 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf1N1B4_2549 -3.3 -8.7 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf1N1B4_1307 -3.3 -3.1 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_2338 -3.3 -5.4 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_1831 -3.2 -10.5 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf1N1B4_2384 -3.2 -11.7 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf1N1B4_1067 -3.2 -6.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf1N1B4_1624 -3.2 -8.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf1N1B4_1533 -3.2 -6.6 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf1N1B4_2303 -3.1 -14.8 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf1N1B4_1408 -3.1 -4.9 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf1N1B4_2545 -3.1 -12.7 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Pf1N1B4_2548 -3.1 -6.9 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf1N1B4_5665 -3.1 -5.5 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf1N1B4_2547 -3.0 -3.5 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf1N1B4_1830 -3.0 -9.8 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf1N1B4_742 -3.0 -6.8 Argininosuccinate synthase (EC 6.3.4.5) compare
Pf1N1B4_2112 -3.0 -14.7 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
Pf1N1B4_2282 -2.9 -9.1 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_12 -2.9 -6.7 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf1N1B4_2284 -2.9 -5.0 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf1N1B4_1627 -2.9 -4.3 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf1N1B4_2144 -2.9 -8.4 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) compare
Pf1N1B4_1626 -2.8 -7.9 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf1N1B4_2489 -2.8 -7.2 Biotin synthesis protein BioH compare
Pf1N1B4_2009 -2.8 -4.8 LysR family transcriptional regulator PA5437 compare
Pf1N1B4_1153 -2.8 -4.7 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
Pf1N1B4_1 -2.7 -3.3 Colicin V production protein compare
Pf1N1B4_350 -2.7 -8.9 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Pf1N1B4_2010 -2.7 -7.2 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf1N1B4_1565 -2.6 -4.8 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf1N1B4_1315 -2.6 -9.1 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Pf1N1B4_58 -2.6 -7.4 Transaldolase (EC 2.2.1.2) compare
Pf1N1B4_3506 -2.6 -7.8 Cysteine synthase B (EC 2.5.1.47) compare
Pf1N1B4_4065 -2.6 -8.5 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf1N1B4_2488 -2.5 -7.6 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf1N1B4_762 -2.5 -7.2 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf1N1B4_2878 -2.5 -9.1 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf1N1B4_2879 -2.5 -6.5 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf1N1B4_2858 -2.4 -10.4 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf1N1B4_1434 -2.4 -7.0 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_3812 -2.4 -9.8 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) compare
Pf1N1B4_847 -2.4 -8.7 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf1N1B4_2272 -2.4 -4.0 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf1N1B4_1625 -2.3 -4.2 FIG00956267: hypothetical protein compare
Pf1N1B4_2337 -2.3 -5.4 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_626 -2.3 -9.2 Quinolinate synthetase (EC 2.5.1.72) compare
Pf1N1B4_2487 -2.3 -8.5 Biotin synthase (EC 2.8.1.6) compare
Pf1N1B4_1611 -2.2 -5.0 Nitrogen regulation protein NR(I) compare
Pf1N1B4_3697 -2.2 -9.3 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf1N1B4_2491 -2.2 -4.5 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf1N1B4_4678 -2.1 -5.2 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) compare
Pf1N1B4_3081 -2.0 -16.9 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf1N1B4_2377 -2.0 -6.2 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Pf1N1B4_2167 -1.9 -7.1 Ammonium transporter compare
Pf1N1B4_1837 -1.9 -2.9 Osmotically inducible protein C compare
Pf1N1B4_2011 -1.9 -7.9 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf1N1B4_2208 -1.9 -7.2 Polyphosphate kinase (EC 2.7.4.1) compare
Pf1N1B4_5224 -1.8 -3.7 tRNA-Arg-CCT compare
Pf1N1B4_2490 -1.8 -6.1 Biotin synthesis protein BioC compare
Pf1N1B4_3833 -1.8 -7.9 Major porin and structural outer membrane porin OprF compare
Pf1N1B4_27 -1.8 -4.5 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf1N1B4_1610 -1.8 -4.1 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf1N1B4_1617 -1.7 -7.5 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) compare
Pf1N1B4_1566 -1.7 -5.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf1N1B4_974 -1.7 -3.7 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf1N1B4_1668 -1.7 -5.5 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Pf1N1B4_2225 -1.7 -10.0 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) compare
Pf1N1B4_2850 -1.7 -6.8 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf1N1B4_2874 -1.6 -3.1 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf1N1B4_1317 -1.6 -3.6 Sensor histidine kinase/response regulator compare
Pf1N1B4_430 -1.6 -3.1 hypothetical protein compare
Pf1N1B4_3907 -1.5 -3.1 FIG00953287: hypothetical protein compare
Pf1N1B4_1906 -1.5 -4.0 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Pf1N1B4_801 -1.5 -6.9 D-serine/D-alanine/glycine transporter conserved
Pf1N1B4_2280 -1.5 -7.4 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf1N1B4_3582 -1.4 -2.7 C-methyltransferase compare
Pf1N1B4_4299 -1.4 -3.1 sensor histidine kinase compare
Pf1N1B4_2859 -1.4 -9.9 Two-component sensor CbrA: intrcellular carbon:nitrogen balance compare
Pf1N1B4_4156 -1.3 -2.8 putative secreted protein compare
Pf1N1B4_2486 -1.3 -1.7 hypothetical protein compare
Pf1N1B4_4481 -1.3 -2.8 Transcriptional regulator BkdR of isoleucine and valine catabolism operon compare
Pf1N1B4_2893 -1.3 -6.1 Carbonic anhydrase (EC 4.2.1.1) compare
Pf1N1B4_2360 -1.3 -1.7 hypothetical protein compare
Pf1N1B4_578 -1.3 -3.1 enoyl-CoA hydratase, R-specific compare
Pf1N1B4_349 -1.2 -3.7 Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) compare
Pf1N1B4_219 -1.1 -3.1 Acyclic terpenes utilization regulator AtuR, TetR family compare
Pf1N1B4_3217 -1.1 -3.2 High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1) compare
Pf1N1B4_1059 -1.1 -2.6 FIG137478: Hypothetical protein YbgI compare
Pf1N1B4_5737 -1.1 -2.9 Nitrate/nitrite transporter compare
Pf1N1B4_1126 -1.1 -2.7 Dipeptide transport ATP-binding protein DppD (TC 3.A.1.5.2) compare
Pf1N1B4_257 -1.1 -4.8 sensor histidine kinase/response regulator compare
Pf1N1B4_255 -1.1 -3.8 Free methionine-(R)-sulfoxide reductase, contains GAF domain compare
Pf1N1B4_4195 -1.1 -3.4 Transcriptional regulator, TetR family compare
Pf1N1B4_980 -1.1 -1.8 hypothetical protein compare
Pf1N1B4_4531 -1.1 -1.7 FIG01221261: hypothetical protein compare
Pf1N1B4_3818 -1.0 -1.3 Propionate catabolism operon transcriptional regulator of GntR family [predicted] compare
Pf1N1B4_740 -1.0 -2.4 Leucyl-tRNA synthetase compare
Pf1N1B4_2005 -1.0 -1.2 ATP-dependent DNA helicase UvrD/PcrA compare
Pf1N1B4_76 -1.0 -2.3 ATP binding protein compare
Pf1N1B4_2493 -1.0 -2.2 Acyl-CoA dehydrogenase (EC 1.3.8.7) compare
Pf1N1B4_2008 -1.0 -5.9 Phosphogluconate repressor HexR, RpiR family compare
Pf1N1B4_5464 -1.0 -2.3 Cointegrate resolution protein T compare
Pf1N1B4_3703 -1.0 -2.3 NLP/P60 family protein compare
Pf1N1B4_617 -1.0 -1.3 Carbamate kinase (EC 2.7.2.2) compare
Pf1N1B4_2684 -1.0 -2.0 Uncharacterized protein, similar to the N-terminal domain of Lon protease compare
Pf1N1B4_4833 -1.0 -2.7 DNA-binding response regulator, LuxR family compare
Pf1N1B4_916 -1.0 -5.7 Glutamate Aspartate transport system permease protein GltJ (TC 3.A.1.3.4) compare
Pf1N1B4_3906 -1.0 -3.2 DNA topoisomerase I (EC 5.99.1.2) compare
Pf1N1B4_5997 -1.0 -2.0 Taurine dioxygenase (EC 1.14.11.17) compare
Pf1N1B4_175 -1.0 -1.8 sigma-54 dependent transcriptional regulator compare
Pf1N1B4_4393 -0.9 -1.5 Ferredoxin reductase compare
Pf1N1B4_1065 -0.9 -4.3 Histidinol-phosphate aminotransferase (EC 2.6.1.9) compare
Pf1N1B4_3518 -0.9 -1.7 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Pf1N1B4_678 -0.9 -4.9 Pyruvate kinase (EC 2.7.1.40) compare
Pf1N1B4_1653 -0.9 -4.4 Branched-chain amino acid transport protein AzlC compare
Pf1N1B4_5838 -0.9 -2.0 FIG00956589: hypothetical protein compare
Pf1N1B4_3692 -0.9 -2.2 Chaperone protein HtpG compare
Pf1N1B4_5682 -0.9 -2.1 SOS-response repressor and protease LexA (EC 3.4.21.88) compare
Pf1N1B4_866 -0.9 -1.7 Iron-sulfur cluster regulator IscR compare
Pf1N1B4_4107 -0.9 -1.8 Probable glutathione S-transferase (EC 2.5.1.18), YfcF homolog compare
Pf1N1B4_1057 -0.9 -1.6 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf1N1B4_4594 -0.9 -1.6 Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1) compare
Pf1N1B4_2400 -0.9 -2.1 FIG00955006: hypothetical protein compare
Pf1N1B4_2209 -0.9 -5.2 Exopolyphosphatase (EC 3.6.1.11) compare
Pf1N1B4_4038 -0.9 -1.7 NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3) compare
Pf1N1B4_629 -0.9 -2.2 Queuosine Biosynthesis QueE Radical SAM compare
Pf1N1B4_3768 -0.9 -2.0 Homoserine/homoserine lactone efflux protein compare
Pf1N1B4_4585 -0.9 -1.9 Putative Isoquinoline 1-oxidoreductase subunit, Mll3835 protein compare
Pf1N1B4_1060 -0.9 -1.8 FIG137478: Hypothetical protein YbgI compare
Pf1N1B4_5721 -0.9 -1.7 Periplasmic protein p19 involved in high-affinity Fe2+ transport compare
Pf1N1B4_855 -0.9 -2.2 FIG021952: putative membrane protein compare
Pf1N1B4_1554 -0.9 -4.0 predicted FeS cluster maintenance protein (from data) compare
Pf1N1B4_4432 -0.9 -3.3 Dienelactone hydrolase family compare
Pf1N1B4_2891 -0.9 -2.8 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) compare
Pf1N1B4_5133 -0.9 -2.5 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) compare
Pf1N1B4_4437 -0.9 -2.3 hypothetical protein compare
Pf1N1B4_4368 -0.9 -2.6 Guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf1N1B4_5745 -0.9 -1.5 FIG139928: Putative protease compare
Pf1N1B4_1475 -0.8 -3.7 FIG00962376: hypothetical protein compare
Pf1N1B4_2568 -0.8 -1.9 Translation elongation factor Tu compare
Pf1N1B4_5722 -0.8 -1.7 Periplasmic protein p19 involved in high-affinity Fe2+ transport compare
Pf1N1B4_2036 -0.8 -2.6 Phosphate transport system permease protein PstA (TC 3.A.1.7.1) compare
Pf1N1B4_3322 -0.8 -5.1 L-aspartate oxidase (EC 1.4.3.16) compare
Pf1N1B4_1544 -0.8 -4.2 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf1N1B4_5812 -0.8 -2.2 FIG00955248: hypothetical protein compare
Pf1N1B4_5957 -0.8 -1.8 Arsenical resistance operon repressor compare
Pf1N1B4_507 -0.8 -0.9 FIG00956448: hypothetical protein compare
Pf1N1B4_3152 -0.8 -3.4 LysR family transcriptional regulator PA3398 compare
Pf1N1B4_4205 -0.8 -2.3 Probable signal peptide protein compare
Pf1N1B4_3751 -0.8 -0.8 FIG00953060: hypothetical protein compare
Pf1N1B4_4199 -0.8 -2.7 Protocatechuate 4,5-dioxygenase beta chain (EC 1.13.11.8) compare
Pf1N1B4_1750 -0.8 -1.8 Death on curing protein, Doc toxin compare
Pf1N1B4_4192 -0.8 -1.9 Hydrolase, alpha/beta fold family functionally coupled to Phosphoribulokinase compare
Pf1N1B4_3078 -0.8 -1.6 FIG138056: a glutathione-dependent thiol reductase compare
Pf1N1B4_328 -0.8 -2.6 Glucosyltransferase (side chain biosynthesis) (EC 2.4.1.-) compare
Pf1N1B4_1946 -0.8 -3.1 Transcriptional regulator of glmS gene, DeoR family compare
Pf1N1B4_1191 -0.8 -1.4 hypothetical protein compare
Pf1N1B4_3290 -0.8 -1.9 Alternative cytochrome c oxidase polypeptide CoxP (EC 1.9.3.1) compare
Pf1N1B4_1391 -0.8 -3.2 Protein containing transglutaminase-like domain, putative cysteine protease compare
Pf1N1B4_3443 -0.8 -2.0 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf1N1B4_915 -0.8 -3.8 Glutamate Aspartate transport system permease protein GltK (TC 3.A.1.3.4) compare
Pf1N1B4_4132 -0.8 -1.4 Mobile element protein compare
Pf1N1B4_1234 -0.8 -2.5 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Pf1N1B4_2851 -0.8 -1.4 hypothetical protein compare
Pf1N1B4_5124 -0.8 -2.6 two component transcriptional regulator, LuxR family compare
Pf1N1B4_3980 -0.8 -1.5 Transcriptional regulator, HxlR family compare
Pf1N1B4_1590 -0.7 -3.0 Histidine utilization repressor compare
Pf1N1B4_348 -0.7 -2.4 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf1N1B4_3685 -0.7 -2.5 Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) compare
Pf1N1B4_3636 -0.7 -1.7 FIG00953562: hypothetical protein compare
Pf1N1B4_2335 -0.7 -2.5 Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) compare
Pf1N1B4_4102 -0.7 -2.1 Mannose-6-phosphate isomerase (EC 5.3.1.8) compare
Pf1N1B4_2029 -0.7 -1.7 FIG00953722: hypothetical protein compare
Pf1N1B4_3143 -0.7 -1.7 RecA protein compare
Pf1N1B4_3445 -0.7 -2.0 Succinylarginine dihydrolase (EC 3.5.3.23) compare
Pf1N1B4_5371 -0.7 -1.3 hypothetical protein compare
Pf1N1B4_3503 -0.7 -2.3 Two-component response regulator PfeR, enterobactin compare
Pf1N1B4_5753 -0.7 -1.7 putative membrane protein compare
Pf1N1B4_4320 -0.7 -2.0 Phosphonate ABC transporter permease protein phnE2 (TC 3.A.1.9.1) compare
Pf1N1B4_5783 -0.7 -2.7 Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22) compare
Pf1N1B4_379 -0.7 -2.1 Protein of unknown function UPF0060 compare
Pf1N1B4_4040 -0.7 -1.6 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) compare
Pf1N1B4_204 -0.7 -2.2 FIG006220: Hypothetical MbtH-like protein compare
Pf1N1B4_4870 -0.7 -1.2 Isoquinoline 1-oxidoreductase alpha subunit (EC 1.3.99.16) compare
Pf1N1B4_3494 -0.7 -1.4 Flavoprotein WrbA compare
Pf1N1B4_1675 -0.7 -1.6 Transcriptional regulator compare
Pf1N1B4_1328 -0.7 -1.7 Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) compare
Pf1N1B4_365 -0.7 -3.0 Cell division protein BolA compare
Pf1N1B4_1180 -0.7 -1.3 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf1N1B4_917 -0.7 -3.9 Glutamate Aspartate periplasmic binding protein precursor GltI (TC 3.A.1.3.4) compare
Pf1N1B4_231 -0.7 -2.6 Sensor histidine kinase compare
Pf1N1B4_5266 -0.7 -1.4 hypothetical protein compare
Pf1N1B4_952 -0.7 -2.5 Cell division protein MraZ compare
Pf1N1B4_3809 -0.7 -2.2 Oxidoreductase, short chain dehydrogenase/reductase family compare


Specific Phenotypes

For 3 genes in this experiment

For nitrogen source D-Alanine in Pseudomonas fluorescens FW300-N1B4

For nitrogen source D-Alanine across organisms