Experiment set4IT090 for Pseudomonas fluorescens FW300-N2E3

Compare to:

LB

200 most important genes:

  gene name fitness t score description  
AO353_22685 -3.5 -4.2 peroxidase compare
AO353_13100 -3.3 -2.2 GTPase RsgA compare
AO353_17885 -2.5 -2.9 hypothetical protein compare
AO353_07315 -2.5 -3.6 rRNA methyltransferase compare
AO353_21625 -2.4 -2.8 Fe/S biogenesis protein NfuA compare
AO353_18505 -2.3 -2.6 translation initiation factor 2 compare
AO353_12500 -2.3 -2.6 shikimate kinase compare
AO353_09040 -2.2 -2.3 diaminopimelate epimerase compare
AO353_09000 -2.2 -5.1 argininosuccinate lyase compare
AO353_00825 -2.1 -4.2 porin compare
AO353_07355 -2.1 -5.3 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_10670 -2.0 -7.2 shikimate dehydrogenase compare
AO353_11750 -2.0 -2.6 ATPase compare
AO353_09240 -1.9 -2.9 acetylglutamate kinase compare
AO353_07155 -1.9 -5.9 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_00430 -1.9 -4.1 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_08880 -1.8 -2.7 exopolyphosphatase compare
AO353_12115 -1.8 -3.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_14495 -1.8 -9.4 acetolactate synthase 3 catalytic subunit compare
AO353_04520 -1.8 -5.7 elongation factor 4 compare
AO353_11770 -1.7 -2.2 molecular chaperone Hsp33 compare
AO353_06040 -1.7 -3.8 exodeoxyribonuclease V subunit alpha compare
AO353_00495 -1.7 -2.4 DNA topoisomerase I compare
AO353_05690 -1.6 -3.4 SsrA-binding protein compare
AO353_08685 -1.6 -6.9 N-acetylglutamate synthase compare
AO353_10930 -1.6 -7.1 DNA polymerase I compare
AO353_20185 -1.6 -5.6 DNA-binding protein compare
AO353_02070 -1.5 -6.4 prephenate dehydratase compare
AO353_15250 -1.5 -3.6 cytochrome B compare
AO353_16805 -1.5 -5.0 recombinase RecA compare
AO353_18540 -1.5 -2.9 pseudouridine synthase compare
AO353_09250 -1.5 -2.8 exodeoxyribonuclease III compare
AO353_16530 -1.5 -1.9 ribonuclease HII compare
AO353_04190 -1.4 -2.2 glycerol-3-phosphate dehydrogenase compare
AO353_11340 -1.4 -2.0 MarR family transcriptional regulator compare
AO353_03710 -1.4 -1.8 formyltetrahydrofolate deformylase compare
AO353_16940 -1.4 -5.2 deoxycytidine triphosphate deaminase compare
AO353_02250 -1.4 -2.4 chorismate synthase compare
AO353_04565 -1.4 -5.0 nucleoid-associated protein compare
AO353_20565 -1.4 -2.2 tRNA-Ala compare
AO353_13225 -1.4 -3.0 50S ribosomal protein L9 compare
AO353_05880 -1.3 -2.3 plasmid stabilization protein compare
AO353_06045 -1.3 -5.4 exodeoxyribonuclease V subunit beta compare
AO353_04365 -1.3 -4.7 recombinase XerD compare
AO353_27650 -1.3 -3.8 cell division protein FtsK compare
AO353_12090 -1.3 -2.7 imidazole glycerol phosphate synthase subunit HisF compare
AO353_09890 -1.3 -3.9 phosphate ABC transporter ATP-binding protein compare
AO353_03100 -1.3 -2.1 XRE family transcriptional regulator compare
AO353_03590 -1.3 -3.5 crossover junction endodeoxyribonuclease RuvC compare
AO353_27720 -1.2 -4.0 cupin compare
AO353_03585 -1.2 -2.6 ATP-dependent DNA helicase RuvA compare
AO353_08115 -1.2 -4.8 energy transducer TonB compare
AO353_02060 -1.2 -2.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
AO353_03670 -1.2 -4.0 ornithine acetyltransferase compare
AO353_04355 -1.2 -1.9 homoserine dehydrogenase compare
AO353_08165 -1.2 -2.5 pyrroline-5-carboxylate reductase compare
AO353_11730 -1.2 -6.4 glutamate--cysteine ligase compare
AO353_03580 -1.2 -2.7 ATP-dependent DNA helicase RuvB compare
AO353_04500 -1.2 -2.2 DNA repair protein RecO compare
AO353_06050 -1.1 -4.9 exodeoxyribonuclease V subunit gamma compare
AO353_04810 -1.1 -1.5 hypothetical protein compare
AO353_06320 -1.1 -3.4 AsnC family transcriptional regulator compare
AO353_00265 -1.1 -2.8 hypothetical protein compare
AO353_18425 -1.1 -3.6 hypothetical protein compare
AO353_03795 -1.1 -3.1 fumarate hydratase compare
AO353_22810 -1.1 -1.4 hypothetical protein compare
AO353_27380 -1.1 -2.1 pyocin R2, holin compare
AO353_24425 -1.1 -1.8 amino acid ABC transporter permease compare
AO353_02570 -1.1 -2.7 hypothetical protein compare
AO353_09315 -1.1 -6.4 LysR family transcriptional regulator compare
AO353_09050 -1.1 -3.1 recombinase XerC compare
AO353_11165 -1.1 -6.3 hypothetical protein compare
AO353_04175 -1.1 -3.5 glycerol uptake facilitator GlpF compare
AO353_26055 -1.1 -2.2 hypothetical protein compare
AO353_28425 -1.1 -2.8 TetR family transcriptional regulator compare
AO353_23945 -1.0 -1.2 hypothetical protein compare
AO353_27725 -1.0 -2.7 GNAT family acetyltransferase compare
AO353_22415 -1.0 -3.1 alcohol dehydrogenase compare
AO353_03420 -1.0 -3.1 phosphogluconate dehydratase compare
AO353_18560 -1.0 -1.6 class I peptide chain release factor compare
AO353_12105 -1.0 -4.5 peptidase S41 compare
AO353_19360 -1.0 -1.9 peroxiredoxin compare
AO353_00355 -1.0 -2.3 transcriptional regulator compare
AO353_02005 -1.0 -1.4 hypothetical protein compare
AO353_01550 -1.0 -4.1 hypothetical protein compare
AO353_16810 -1.0 -2.7 recombinase RecX compare
AO353_09320 -1.0 -5.6 ATP-dependent DNA helicase RecG compare
AO353_13140 -1.0 -3.6 tRNA dimethylallyltransferase compare
AO353_12930 -1.0 -2.4 GlcNAc-PI de-N-acetylase compare
AO353_03615 -1.0 -2.2 cold-shock protein compare
AO353_19605 -1.0 -1.8 hypothetical protein compare
AO353_24130 -1.0 -2.3 hypothetical protein compare
AO353_20175 -1.0 -2.4 ATP-dependent Clp protease proteolytic subunit compare
AO353_01975 -0.9 -4.7 glycosyl transferase compare
AO353_21655 -0.9 -2.6 cobalamin biosynthesis protein CobW compare
AO353_05420 -0.9 -1.3 peptide chain release factor 3 compare
AO353_01410 -0.9 -2.4 ribonuclease E compare
AO353_14500 -0.9 -4.0 acetolactate synthase 3 regulatory subunit compare
AO353_24990 -0.9 -2.0 translation elongation factor compare
AO353_04105 -0.9 -4.9 argininosuccinate synthase compare
AO353_22270 -0.9 -3.0 antibiotic biosynthesis monooxygenase compare
AO353_09905 -0.9 -4.9 phosphate-binding protein compare
AO353_06850 -0.9 -2.9 MFS transporter compare
AO353_10945 -0.9 -2.1 cytochrome C compare
AO353_06495 -0.9 -3.1 gamma-glutamyl phosphate reductase compare
AO353_22920 -0.9 -3.2 GntR family transcriptional regulator compare
AO353_18305 -0.9 -2.2 RNA helicase compare
AO353_05145 -0.9 -3.5 ABC transporter permease compare
AO353_23450 -0.9 -2.1 LysR family transcriptional regulator compare
AO353_20170 -0.9 -3.2 trigger factor compare
AO353_16350 -0.9 -2.7 SAM-dependent methyltransferase compare
AO353_20925 -0.9 -2.0 hypothetical protein compare
AO353_14775 -0.9 -3.7 hypothetical protein compare
AO353_02010 -0.9 -3.8 glycosyl transferase family 1 compare
AO353_27125 -0.9 -3.6 hypothetical protein compare
AO353_16055 -0.9 -2.5 hypothetical protein compare
AO353_08975 -0.8 -3.8 heme biosynthesis protein HemY compare
AO353_01970 -0.8 -5.3 hypothetical protein compare
AO353_10055 -0.8 -5.7 DNA helicase II compare
AO353_13200 -0.8 -5.4 exoribonuclease R compare
AO353_08440 -0.8 -1.9 hypothetical protein compare
AO353_10705 -0.8 -2.7 tryptophan synthase subunit alpha compare
AO353_08980 -0.8 -2.1 heme biosynthesis operon protein HemX compare
AO353_09745 -0.8 -1.2 hypothetical protein compare
AO353_17035 -0.8 -3.1 hypothetical protein compare
AO353_07850 -0.8 -2.2 ATP-dependent RNA helicase compare
AO353_29280 -0.8 -2.2 hypothetical protein compare
AO353_09275 -0.8 -2.2 DNA-directed RNA polymerase subunit omega compare
AO353_05550 -0.8 -3.7 pseudouridine synthase compare
AO353_17365 -0.8 -2.0 hypothetical protein compare
AO353_27950 -0.8 -1.1 hypothetical protein compare
AO353_24700 -0.8 -2.1 peptidase compare
AO353_10495 -0.8 -2.1 serine hydroxymethyltransferase compare
AO353_14420 -0.8 -2.2 molecular chaperone DnaK compare
AO353_13685 -0.8 -2.8 3-dehydroquinate dehydratase compare
AO353_03815 -0.8 -1.4 heme utilization protein compare
AO353_27130 -0.8 -1.5 hypothetical protein compare
AO353_26075 -0.8 -3.3 FAD-binding protein compare
AO353_16835 -0.8 -0.9 LuxR family transcriptional regulator compare
AO353_26440 -0.8 -2.1 hypothetical protein compare
AO353_09900 -0.8 -5.0 phosphate ABC transporter permease compare
AO353_00810 -0.7 -1.5 Nitrite reductase (NAD(P)H) (EC 1.7.1.4) (from data) compare
AO353_14370 -0.7 -3.4 glucose-6-phosphate isomerase compare
AO353_15185 -0.7 -2.7 ATPase compare
AO353_01725 -0.7 -1.7 phosphohistidine phosphatase compare
AO353_16675 -0.7 -2.8 phage tail protein compare
AO353_20370 -0.7 -1.9 MerR family transcriptional regulator compare
AO353_16195 -0.7 -1.1 DNA mismatch repair protein MutT compare
AO353_05900 -0.7 -2.7 permease DsdX compare
AO353_14740 -0.7 -2.1 GTP-binding protein compare
AO353_05920 -0.7 -3.1 hypothetical protein compare
AO353_01435 -0.7 -2.3 protein tyrosine phosphatase compare
AO353_13800 -0.7 -2.3 hypothetical protein compare
AO353_03290 -0.7 -1.4 peptide deformylase compare
AO353_19295 -0.7 -1.2 hypothetical protein compare
AO353_00955 -0.7 -1.9 cytotoxic translational repressor of toxin-antitoxin stability system compare
AO353_01995 -0.7 -5.2 hypothetical protein compare
AO353_11915 -0.7 -3.7 agmatine deiminase compare
AO353_21430 -0.7 -1.9 hypothetical protein compare
AO353_07075 -0.7 -2.8 elongation factor Tu compare
AO353_08100 -0.7 -1.4 chemotaxis protein CheY compare
AO353_10440 -0.7 -2.7 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
AO353_20860 -0.7 -1.2 hypothetical protein compare
AO353_15905 -0.7 -3.3 outer membrane protein assembly factor BamB compare
AO353_00760 -0.7 -1.3 hypothetical protein compare
AO353_07445 -0.7 -1.2 pyrroloquinoline quinone biosynthesis protein PqqD compare
AO353_06455 -0.7 -1.6 D-alanyl-D-alanine carboxypeptidase compare
AO353_14395 -0.7 -2.0 poly(A) polymerase compare
AO353_18890 -0.7 -2.5 cytochrome C compare
AO353_15785 -0.7 -3.6 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
AO353_03360 -0.7 -3.6 glucose-6-phosphate dehydrogenase compare
AO353_01355 -0.7 -3.6 3-oxoacyl-ACP synthase compare
AO353_00660 -0.7 -1.4 transcriptional regulator compare
AO353_27335 -0.7 -1.6 hypothetical protein compare
AO353_15260 -0.7 -2.6 stringent starvation protein A compare
AO353_02975 -0.7 -1.9 aspartate kinase compare
AO353_02710 -0.7 -4.5 (p)ppGpp synthetase compare
AO353_24260 -0.7 -1.0 hypothetical protein compare
AO353_09440 -0.7 -0.9 type VI secretion protein compare
AO353_23515 -0.7 -2.2 muconate cycloisomerase compare
AO353_05100 -0.6 -3.3 nickel ABC transporter substrate-binding protein compare
AO353_21990 -0.6 -2.1 cytochrome C compare
AO353_23955 -0.6 -1.9 RND transporter compare
AO353_18715 -0.6 -1.0 histidine kinase compare
AO353_08105 -0.6 -2.5 pilus assembly protein PilG compare
AO353_12565 -0.6 -1.7 type II secretion system protein GspH compare
AO353_25785 -0.6 -1.9 adhesin compare
AO353_11775 -0.6 -3.3 phosphoenolpyruvate carboxykinase [ATP] compare
AO353_20120 -0.6 -1.5 hypothetical protein compare
AO353_01595 -0.6 -0.9 Flp pilus assembly protein CpaB compare
AO353_27135 -0.6 -2.2 hypothetical protein compare
AO353_16070 -0.6 -2.3 PadR family transcriptional regulator compare
AO353_06125 -0.6 -2.1 ArsR family transcriptional regulator compare
AO353_14585 -0.6 -2.6 ribosomal-protein-alanine acetyltransferase compare
AO353_08765 -0.6 -2.2 hypothetical protein compare
AO353_13245 -0.6 -3.6 hypothetical protein compare
AO353_07730 -0.6 -2.4 hypothetical protein compare
AO353_00600 -0.6 -2.8 cytochrome C oxidase Cbb3 compare
AO353_26280 -0.6 -1.9 peptidase M48, Ste24p compare
AO353_12385 -0.6 -2.2 polyhydroxyalkanoic acid system protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2E3 in lb experiments