Experiment set4IT089 for Pseudomonas fluorescens FW300-N2E3

Compare to:

LB with Benzalkonium Chloride 0.012 mg/ml

200 most important genes:

  gene name fitness t score description  
AO353_22685 -3.8 -2.6 peroxidase compare
AO353_12990 -3.7 -5.5 multidrug DMT transporter conserved
AO353_02005 -3.6 -2.5 hypothetical protein compare
AO353_04035 -3.5 -3.4 exclusion suppressor FxsA compare
AO353_17295 -3.4 -14.8 multidrug transporter compare
AO353_17300 -3.4 -5.2 antibiotic transporter compare
AO353_02940 -3.4 -3.9 DNA-binding protein compare
AO353_23710 -3.4 -5.9 protein BatD compare
AO353_07315 -3.3 -3.2 rRNA methyltransferase compare
AO353_07140 -3.3 -17.8 peptidase M23 compare
AO353_16425 -3.2 -3.4 Fe-S metabolism protein SufE compare
AO353_12995 -3.1 -5.1 LysR family transcriptional regulator conserved
AO353_06585 -3.1 -5.6 hypothetical protein compare
AO353_04490 -3.1 -7.4 murein transglycosylase compare
AO353_05135 -3.0 -6.1 toluene tolerance protein compare
AO353_04565 -3.0 -3.5 nucleoid-associated protein compare
AO353_15905 -2.9 -4.0 outer membrane protein assembly factor BamB compare
AO353_17645 -2.9 -9.4 peptidase M48 compare
AO353_23735 -2.8 -8.6 AAA family ATPase compare
AO353_00330 -2.8 -7.5 hypothetical protein compare
AO353_09900 -2.7 -9.2 phosphate ABC transporter permease compare
AO353_04190 -2.6 -2.5 glycerol-3-phosphate dehydrogenase compare
AO353_08350 -2.6 -6.7 hypothetical protein compare
AO353_05145 -2.6 -5.3 ABC transporter permease compare
AO353_23715 -2.6 -6.7 hypothetical protein compare
AO353_06415 -2.6 -4.3 hypothetical protein compare
AO353_03580 -2.5 -3.4 ATP-dependent DNA helicase RuvB compare
AO353_12935 -2.5 -3.0 glycosyltransferase compare
AO353_12115 -2.5 -2.9 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_12105 -2.5 -5.3 peptidase S41 compare
AO353_23725 -2.5 -5.3 hypothetical protein compare
AO353_12915 -2.5 -7.3 carbamoyltransferase compare
AO353_02190 -2.4 -11.9 hypothetical protein compare
AO353_12940 -2.4 -7.2 glycosyl transferase compare
AO353_25990 -2.4 -6.0 aspartyl beta-hydroxylase compare
AO353_06455 -2.4 -3.2 D-alanyl-D-alanine carboxypeptidase compare
AO353_09905 -2.3 -8.7 phosphate-binding protein compare
AO353_13100 -2.3 -2.2 GTPase RsgA compare
AO353_05130 -2.3 -2.2 anti-anti-sigma factor compare
AO353_16495 -2.3 -6.4 zinc metallopeptidase RseP compare
AO353_09060 -2.3 -2.6 hypothetical protein compare
AO353_17290 -2.3 -6.0 multidrug transporter compare
AO353_16375 -2.3 -3.2 hypothetical protein compare
AO353_18780 -2.3 -6.4 cobyrinic acid a,c-diamide synthase compare
AO353_09235 -2.2 -6.7 phosphoglucomutase compare
AO353_02010 -2.2 -6.8 glycosyl transferase family 1 compare
AO353_16530 -2.2 -2.5 ribonuclease HII compare
AO353_04500 -2.2 -3.2 DNA repair protein RecO compare
AO353_12950 -2.2 -7.4 polymerase compare
AO353_00835 -2.2 -6.2 transporter compare
AO353_23730 -2.2 -3.2 hypothetical protein compare
AO353_09240 -2.2 -2.9 acetylglutamate kinase compare
AO353_03615 -2.2 -2.5 cold-shock protein compare
AO353_25550 -2.1 -6.1 4-amino-4-deoxy-L-arabinose transferase compare
AO353_05140 -2.1 -6.3 outer membrane lipid asymmetry maintenance protein MlaD compare
AO353_08165 -2.1 -2.5 pyrroline-5-carboxylate reductase compare
AO353_14775 -2.1 -5.3 hypothetical protein compare
AO353_06040 -2.1 -3.6 exodeoxyribonuclease V subunit alpha compare
AO353_27860 -2.1 -7.3 hypothetical protein compare
AO353_17975 -2.0 -7.0 arabinose ABC transporter permease compare
AO353_03585 -2.0 -3.2 ATP-dependent DNA helicase RuvA compare
AO353_20185 -2.0 -6.1 DNA-binding protein compare
AO353_18960 -2.0 -2.4 terminase compare
AO353_15170 -2.0 -3.0 cytochrome D ubiquinol oxidase subunit III compare
AO353_07355 -2.0 -4.8 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_05150 -2.0 -4.5 ABC transporter ATP-binding protein compare
AO353_09320 -2.0 -8.4 ATP-dependent DNA helicase RecG compare
AO353_09890 -2.0 -4.7 phosphate ABC transporter ATP-binding protein compare
AO353_08265 -2.0 -5.6 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO353_03590 -1.9 -4.1 crossover junction endodeoxyribonuclease RuvC compare
AO353_18170 -1.9 -6.9 aspartyl beta-hydroxylase compare
AO353_27650 -1.9 -4.2 cell division protein FtsK compare
AO353_13225 -1.9 -3.1 50S ribosomal protein L9 compare
AO353_09895 -1.9 -7.3 phosphate ABC transporter permease compare
AO353_17625 -1.9 -8.3 RNA polymerase subunit sigma compare
AO353_06045 -1.9 -6.3 exodeoxyribonuclease V subunit beta compare
AO353_02015 -1.9 -6.5 acetyltransferase compare
AO353_13005 -1.9 -10.3 channel protein TolC conserved
AO353_11940 -1.9 -3.2 hypothetical protein compare
AO353_05240 -1.9 -2.8 rod shape-determining protein MreD compare
AO353_08600 -1.9 -3.6 TetR family transcriptional regulator compare
AO353_02710 -1.8 -9.4 (p)ppGpp synthetase compare
AO353_15185 -1.8 -4.4 ATPase compare
AO353_12945 -1.8 -7.5 toluene tolerance protein compare
AO353_02690 -1.8 -8.4 dehydrogenase compare
AO353_11750 -1.8 -2.4 ATPase compare
AO353_16365 -1.8 -12.9 multidrug transporter AcrB compare
AO353_27865 -1.8 -9.8 hypothetical protein compare
AO353_16360 -1.8 -7.7 RND transporter compare
AO353_09835 -1.8 -3.1 rubredoxin compare
AO353_23720 -1.8 -3.7 BatB protein compare
AO353_07155 -1.8 -5.2 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_00825 -1.7 -4.0 porin compare
AO353_12930 -1.7 -3.4 GlcNAc-PI de-N-acetylase compare
AO353_03710 -1.7 -2.0 formyltetrahydrofolate deformylase compare
AO353_09720 -1.7 -1.7 hypothetical protein compare
AO353_20170 -1.7 -4.6 trigger factor compare
AO353_10930 -1.7 -6.6 DNA polymerase I compare
AO353_26835 -1.7 -3.2 transcriptional regulator compare
AO353_10985 -1.7 -2.0 hypothetical protein compare
AO353_23450 -1.7 -2.9 LysR family transcriptional regulator compare
AO353_19020 -1.7 -2.8 hypothetical protein compare
AO353_12420 -1.6 -2.9 predicted FeS cluster maintenance protein (from data) compare
AO353_13200 -1.6 -8.5 exoribonuclease R compare
AO353_14115 -1.6 -5.8 gamma-glutamyl kinase compare
AO353_08685 -1.6 -6.4 N-acetylglutamate synthase compare
AO353_00360 -1.6 -4.7 ATPase compare
AO353_01975 -1.6 -6.4 glycosyl transferase compare
AO353_14485 -1.6 -1.9 pseudouridine synthase compare
AO353_02970 -1.6 -3.4 carbon storage regulator compare
AO353_09000 -1.5 -4.6 argininosuccinate lyase compare
AO353_02815 -1.5 -4.9 transcriptional regulator compare
AO353_14420 -1.5 -3.0 molecular chaperone DnaK compare
AO353_11770 -1.5 -1.7 molecular chaperone Hsp33 compare
AO353_07645 -1.5 -1.7 sarcosine oxidase subunit gamma compare
AO353_11730 -1.5 -7.3 glutamate--cysteine ligase compare
AO353_13140 -1.5 -4.4 tRNA dimethylallyltransferase compare
AO353_13465 -1.5 -5.6 hypothetical protein compare
AO353_20200 -1.5 -3.4 peptidylprolyl isomerase compare
AO353_03715 -1.5 -2.1 H-NS histone compare
AO353_04240 -1.5 -1.4 chemotaxis protein CheW compare
AO353_07925 -1.5 -7.6 beta-hydroxylase compare
AO353_23495 -1.5 -2.8 SAM-dependent methyltransferase compare
AO353_06495 -1.5 -4.3 gamma-glutamyl phosphate reductase compare
AO353_06460 -1.5 -6.0 hypothetical protein compare
AO353_05625 -1.5 -1.3 transcription elongation factor GreA compare
AO353_02025 -1.5 -7.5 mannose-1-phosphate guanyltransferase compare
AO353_08880 -1.4 -2.1 exopolyphosphatase compare
AO353_14495 -1.4 -7.9 acetolactate synthase 3 catalytic subunit compare
AO353_27950 -1.4 -1.5 hypothetical protein compare
AO353_01995 -1.4 -9.2 hypothetical protein compare
AO353_27090 -1.4 -2.0 hypothetical protein compare
AO353_05225 -1.4 -10.1 hypothetical protein compare
AO353_04355 -1.4 -2.1 homoserine dehydrogenase compare
AO353_18560 -1.4 -2.6 class I peptide chain release factor compare
AO353_05420 -1.4 -2.0 peptide chain release factor 3 compare
AO353_13575 -1.4 -2.6 hypothetical protein compare
AO353_10895 -1.4 -4.1 hypothetical protein compare
AO353_13130 -1.4 -2.7 N-acetylmuramoyl-L-alanine amidase compare
AO353_27855 -1.3 -1.6 MarR family transcriptional regulator compare
AO353_22800 -1.3 -2.6 sulfite reductase compare
AO353_20660 -1.3 -3.3 pseudouridine synthase compare
AO353_16035 -1.3 -7.1 Lon protease compare
AO353_16810 -1.3 -3.0 recombinase RecX compare
AO353_15490 -1.3 -1.4 hypothetical protein compare
AO353_02000 -1.3 -2.3 polysaccharide/polyol phosphate ABC transporter ATP-binding protein compare
AO353_17175 -1.3 -1.7 beta-ketoadipyl CoA thiolase compare
AO353_26045 -1.3 -2.0 hypothetical protein compare
AO353_14585 -1.3 -4.2 ribosomal-protein-alanine acetyltransferase compare
AO353_00725 -1.3 -4.3 GntR family transcriptional regulator compare
AO353_13160 -1.3 -1.9 membrane protease HflC compare
AO353_00720 -1.3 -5.7 chromosome segregation protein SMC compare
AO353_21425 -1.3 -3.3 hypothetical protein compare
AO353_09315 -1.3 -6.1 LysR family transcriptional regulator compare
AO353_06050 -1.3 -4.9 exodeoxyribonuclease V subunit gamma compare
AO353_13155 -1.3 -3.0 hypothetical protein compare
AO353_17640 -1.3 -2.0 serine peptidase compare
AO353_03360 -1.3 -5.8 glucose-6-phosphate dehydrogenase compare
AO353_19280 -1.3 -1.3 hypothetical protein compare
AO353_03250 -1.3 -1.4 gluconokinase compare
AO353_12460 -1.3 -5.5 malate dehydrogenase compare
AO353_26080 -1.3 -1.9 hypothetical protein compare
AO353_00750 -1.2 -3.2 GntR family transcriptional regulator compare
AO353_02280 -1.2 -1.5 DNA mismatch repair protein MutS compare
AO353_29280 -1.2 -2.9 hypothetical protein compare
AO353_21430 -1.2 -2.9 hypothetical protein compare
AO353_16805 -1.2 -4.3 recombinase RecA compare
AO353_00620 -1.2 -1.9 cytochrome C oxidase Cbb3 compare
AO353_28200 -1.2 -2.9 ribosomal protein S3AE compare
AO353_15410 -1.2 -1.6 hypothetical protein compare
AO353_21350 -1.2 -3.2 methylmalonate-semialdehyde dehydrogenase compare
AO353_02660 -1.2 -3.3 peptidase P60 compare
AO353_11165 -1.1 -6.4 hypothetical protein compare
AO353_09250 -1.1 -2.4 exodeoxyribonuclease III compare
AO353_02945 -1.1 -5.4 magnesium transporter compare
AO353_21560 -1.1 -3.5 type VI secretion protein compare
AO353_13580 -1.1 -2.6 copper resistance protein CopZ compare
AO353_11225 -1.1 -4.0 disulfide bond formation protein DsbA compare
AO353_02440 -1.1 -7.0 peptidase S41 compare
AO353_22150 -1.1 -2.3 iron transporter compare
AO353_09260 -1.1 -4.8 ribonuclease PH compare
AO353_22920 -1.1 -3.7 GntR family transcriptional regulator compare
AO353_17855 -1.1 -2.2 ribonuclease D compare
AO353_05840 -1.1 -7.4 dolichyl-phosphate-mannose-protein mannosyltransferase compare
AO353_00550 -1.1 -7.5 MATE family efflux transporter conserved
AO353_11945 -1.1 -1.0 4-oxalocrotonate tautomerase compare
AO353_08100 -1.1 -2.4 chemotaxis protein CheY compare
AO353_08020 -1.1 -4.9 hypothetical protein compare
AO353_14550 -1.1 -7.6 paraquat-inducible protein A conserved
AO353_23215 -1.1 -2.0 calpastatin compare
AO353_25570 -1.1 -5.7 glycosyltransferase compare
AO353_28425 -1.1 -2.7 TetR family transcriptional regulator compare
AO353_07875 -1.0 -2.3 hypothetical protein compare
AO353_14555 -1.0 -7.2 paraquat-inducible protein A conserved
AO353_06465 -1.0 -4.8 lytic transglycosylase compare
AO353_13720 -1.0 -7.2 arginine decarboxylase compare
AO353_05465 -1.0 -7.0 flavodoxin compare
AO353_03795 -1.0 -2.9 fumarate hydratase compare
AO353_11525 -1.0 -5.4 aminotransferase compare
AO353_07325 -1.0 -1.5 diadenosine tetraphosphatase compare


Specific Phenotypes

For 19 genes in this experiment

For stress Benzalkonium Chloride in Pseudomonas fluorescens FW300-N2E3

For stress Benzalkonium Chloride across organisms