Experiment set4IT089 for Klebsiella michiganensis M5al

Compare to:

D-Raffinose pentahydrate carbon source

200 most important genes:

  gene name fitness t score description  
BWI76_RS20350 -6.1 -7.6 amidophosphoribosyltransferase compare
BWI76_RS00990 -5.9 -5.8 ketol-acid reductoisomerase compare
BWI76_RS20355 -5.9 -4.0 colicin V production protein compare
BWI76_RS20895 -5.8 -5.6 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BWI76_RS05835 -5.5 -3.8 gamma-glutamyl-phosphate reductase compare
BWI76_RS18940 -5.5 -6.5 imidazole glycerol phosphate synthase subunit HisH compare
BWI76_RS05015 -5.4 -3.7 transcriptional regulator compare
BWI76_RS04645 -5.4 -6.4 3-dehydroquinase compare
BWI76_RS04470 -5.4 -9.0 carbamoyl phosphate synthase large subunit compare
BWI76_RS04255 -5.4 -9.6 threonine synthase compare
BWI76_RS00850 -5.3 -8.4 acetylglutamate kinase compare
BWI76_RS04675 -5.2 -7.9 3-isopropylmalate dehydrogenase compare
BWI76_RS04160 -5.1 -4.7 phosphoserine phosphatase compare
BWI76_RS04665 -5.0 -19.9 3-isopropylmalate dehydratase small subunit compare
BWI76_RS02965 -4.9 -8.7 PTS trehalose transporter subunit IIBC compare
BWI76_RS07070 -4.9 -6.6 5-(carboxyamino)imidazole ribonucleotide mutase compare
BWI76_RS25115 -4.8 -9.1 argininosuccinate synthase compare
BWI76_RS04465 -4.7 -5.6 carbamoyl-phosphate synthase small subunit compare
BWI76_RS23360 -4.7 -4.6 diaminopimelate decarboxylase compare
BWI76_RS23920 -4.7 -4.9 D-3-phosphoglycerate dehydrogenase compare
BWI76_RS18930 -4.7 -4.8 histidinol-phosphate transaminase compare
BWI76_RS18920 -4.7 -4.5 ATP phosphoribosyltransferase compare
BWI76_RS01615 -4.7 -10.4 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase compare
BWI76_RS00855 -4.7 -9.9 argininosuccinate lyase compare
BWI76_RS23365 -4.6 -3.2 LysR family transcriptional regulator compare
BWI76_RS22765 -4.6 -13.7 sulfite reductase subunit alpha compare
BWI76_RS22690 -4.6 -4.4 adenylyl-sulfate kinase compare
BWI76_RS00975 -4.5 -12.0 dihydroxy-acid dehydratase compare
BWI76_RS04250 -4.5 -5.2 homoserine kinase compare
BWI76_RS00835 -4.5 -13.6 phosphoenolpyruvate carboxylase compare
BWI76_RS04245 -4.5 -14.4 bifunctional aspartate kinase/homoserine dehydrogenase I compare
BWI76_RS11850 -4.4 -11.0 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase compare
BWI76_RS22805 -4.4 -11.3 GTP diphosphokinase compare
BWI76_RS21265 -4.4 -10.1 phosphoribosylformylglycinamidine synthase compare
BWI76_RS00845 -4.3 -8.3 N-acetyl-gamma-glutamyl-phosphate reductase compare
BWI76_RS18925 -4.3 -7.2 histidinol dehydrogenase compare
BWI76_RS04670 -4.3 -8.7 3-isopropylmalate dehydratase large subunit compare
BWI76_RS01655 -4.3 -9.0 homoserine O-succinyltransferase compare
BWI76_RS20965 -4.3 -5.6 phosphoribosylformylglycinamidine cyclo-ligase compare
BWI76_RS09755 -4.3 -8.1 phosphoserine transaminase compare
BWI76_RS00965 -4.3 -1.6 acetolactate synthase 2 small subunit compare
BWI76_RS19050 -4.3 -11.9 NAD(P)-dependent oxidoreductase compare
BWI76_RS23220 -4.2 -8.5 amino-acid N-acetyltransferase compare
BWI76_RS07065 -4.2 -9.5 5-(carboxyamino)imidazole ribonucleotide synthase compare
BWI76_RS04680 -4.2 -12.5 2-isopropylmalate synthase compare
BWI76_RS25645 -4.1 -8.3 shikimate dehydrogenase compare
BWI76_RS11855 -4.1 -8.4 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase compare
BWI76_RS01610 -4.1 -7.7 phosphoribosylamine--glycine ligase compare
BWI76_RS22755 -4.1 -9.5 phosphoadenosine phosphosulfate reductase compare
BWI76_RS00980 -4.0 -11.5 PLP-dependent threonine dehydratase compare
BWI76_RS11840 -4.0 -5.0 tryptophan synthase subunit alpha compare
BWI76_RS11845 -4.0 -2.8 tryptophan synthase subunit beta compare
BWI76_RS05840 -4.0 -4.4 glutamate 5-kinase compare
BWI76_RS18955 -3.9 -6.4 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase compare
BWI76_RS26455 -3.9 -3.9 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
BWI76_RS11860 -3.8 -9.7 anthranilate synthase component I compare
BWI76_RS08385 -3.8 -4.8 citrate (Si)-synthase compare
BWI76_RS21475 -3.8 -8.0 bifunctional chorismate mutase/prephenate dehydrogenase compare
BWI76_RS18935 -3.8 -9.2 bifunctional imidazole glycerol-phosphate dehydratase/histidinol phosphatase compare
BWI76_RS03010 -3.8 -6.9 ornithine carbamoyltransferase compare
BWI76_RS24285 -3.8 -9.2 cystathionine beta-lyase compare
BWI76_RS00785 -3.7 -7.5 cystathionine gamma-synthase compare
BWI76_RS19045 -3.7 -7.7 capsular polysaccharide biosynthesis protein compare
BWI76_RS00180 -3.6 -1.8 F0F1 ATP synthase subunit epsilon compare
BWI76_RS00805 -3.5 -6.2 5,10-methylenetetrahydrofolate reductase compare
BWI76_RS19060 -3.5 -18.2 glucose-1-phosphate thymidylyltransferase compare
BWI76_RS19040 -3.5 -5.8 hypothetical protein compare
BWI76_RS19035 -3.5 -6.6 dTDP-rhamnosyl transferase compare
BWI76_RS26085 -3.4 -2.3 3-dehydroquinate synthase compare
BWI76_RS22760 -3.4 -6.6 sulfite reductase subunit beta compare
BWI76_RS20435 -3.3 -1.7 chorismate synthase compare
BWI76_RS21465 -3.3 -3.6 bifunctional chorismate mutase/prephenate dehydratase compare
BWI76_RS17720 -3.3 -1.7 muramoyltetrapeptide carboxypeptidase compare
BWI76_RS09660 -3.3 -2.2 DNA translocase FtsK compare
BWI76_RS19065 -3.2 -19.4 dTDP-glucose 4,6-dehydratase compare
BWI76_RS19070 -3.1 -12.9 rhamnosyltransferase compare
BWI76_RS19055 -3.1 -12.2 dTDP-4-dehydrorhamnose 3,5-epimerase compare
BWI76_RS09760 -3.1 -2.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
BWI76_RS04685 -3.1 -9.6 putative leucine operon leader peptide compare
BWI76_RS26470 -3.0 -5.1 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
BWI76_RS00985 -2.9 -5.3 transcriptional regulator IlvY compare
BWI76_RS23240 -2.9 -3.8 exonuclease V subunit gamma compare
BWI76_RS05200 -2.9 -3.3 bifunctional uridylyltransferase/uridylyl-removing protein compare
BWI76_RS19085 -2.8 -14.3 protein-tyrosine-phosphatase compare
BWI76_RS04240 -2.8 -1.2 thr operon leader peptide compare
BWI76_RS11300 -2.8 -1.4 cupin compare
BWI76_RS01800 -2.8 -4.5 glucose-6-phosphate isomerase compare
BWI76_RS19090 -2.8 -11.1 polysaccharide export protein Wza compare
BWI76_RS18950 -2.7 -3.9 imidazole glycerol phosphate synthase cyclase subunit compare
BWI76_RS26460 -2.7 -5.1 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
BWI76_RS01350 -2.6 -1.7 NAD(P)H-flavin reductase compare
BWI76_RS00400 -2.5 -1.5 glutamine synthetase compare
BWI76_RS20970 -2.5 -1.8 phosphoribosylglycinamide formyltransferase compare
BWI76_RS09645 -2.5 -1.5 thioredoxin-disulfide reductase compare
BWI76_RS01210 -2.4 -3.4 tyrosine recombinase XerC compare
BWI76_RS02735 -2.4 -5.0 3'(2'),5'-bisphosphate nucleotidase CysQ compare
BWI76_RS27305 -2.4 -8.9 glycosyl transferase compare
BWI76_RS23230 -2.4 -2.3 exodeoxyribonuclease V subunit beta compare
BWI76_RS26000 -2.3 -5.9 aspartate aminotransferase family protein compare
BWI76_RS08210 -2.3 -2.3 N-acetylglucosamine-6-phosphate deacetylase compare
BWI76_RS26055 -2.3 -8.0 siroheme synthase compare
BWI76_RS00600 -2.2 -7.2 LacI family transcriptional regulator compare
BWI76_RS27280 -2.2 -9.4 polymerase compare
BWI76_RS04270 -2.2 -3.8 transaldolase compare
BWI76_RS20995 -2.1 -3.8 RNA degradosome polyphosphate kinase compare
BWI76_RS21370 -2.1 -1.5 ATP-dependent RNA helicase SrmB compare
BWI76_RS27430 -2.1 -1.4 (p)ppGpp synthetase compare
BWI76_RS19080 -2.1 -15.1 tyrosine autokinase compare
BWI76_RS19010 -2.0 -2.7 polysaccharide pyruvyl transferase yvff compare
BWI76_RS20640 -2.0 -5.6 cysteine synthase A compare
BWI76_RS25320 -2.0 -7.5 glutamate synthase compare
BWI76_RS26570 -2.0 -3.1 anion permease compare
BWI76_RS25315 -1.9 -9.1 glutamate synthase large subunit compare
BWI76_RS15835 -1.8 -1.6 hypothetical protein compare
BWI76_RS27275 -1.8 -5.9 hypothetical protein compare
BWI76_RS20440 -1.8 -1.7 50S ribosomal protein L3 N(5)-glutamine methyltransferase compare
BWI76_RS16965 -1.7 -2.0 murein lipoprotein compare
BWI76_RS21070 -1.7 -2.3 outer membrane protein assembly factor BamB compare
BWI76_RS18990 -1.7 -11.0 ABC transporter permease compare
BWI76_RS00390 -1.7 -3.7 two-component system sensor histidine kinase NtrB compare
BWI76_RS19025 -1.6 -8.7 phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating) compare
BWI76_RS01385 -1.6 -2.5 potassium transporter compare
BWI76_RS08580 -1.6 -3.9 quinolinate synthetase compare
BWI76_RS00345 -1.5 -3.2 protein disulfide oxidoreductase DsbA compare
BWI76_RS00960 -1.5 -4.1 acetolactate synthase 2 catalytic subunit compare
BWI76_RS18985 -1.5 -8.9 LPS O-antigen ABC transporter ATP-binding protein compare
BWI76_RS08525 -1.5 -3.5 colicin transporter compare
BWI76_RS21505 -1.5 -1.3 hypothetical protein compare
BWI76_RS04530 -1.5 -2.3 peptidylprolyl isomerase SurA compare
BWI76_RS06765 -1.5 -2.1 transcriptional regulator compare
BWI76_RS13240 -1.5 -1.4 hypothetical protein compare
BWI76_RS23265 -1.4 -2.9 hypothetical protein compare
BWI76_RS02530 -1.4 -2.1 tRNA dimethylallyltransferase compare
BWI76_RS23480 -1.4 -8.0 EAL domain-containing protein compare
BWI76_RS13975 -1.4 -2.4 urea carboxylase compare
BWI76_RS11980 -1.4 -1.8 DeoR family transcriptional regulator compare
BWI76_RS24945 -1.4 -1.0 glutamine amidotransferase compare
BWI76_RS10700 -1.3 -3.0 XRE family transcriptional regulator compare
BWI76_RS11965 -1.3 -3.4 orotidine-5'-phosphate decarboxylase compare
BWI76_RS10640 -1.3 -2.3 AraC family transcriptional regulator compare
BWI76_RS09530 -1.3 -1.0 hypothetical protein compare
BWI76_RS11515 -1.2 -1.5 peptide-methionine (R)-S-oxide reductase compare
BWI76_RS00385 -1.2 -6.1 nitrogen assimilation regulatory protein compare
BWI76_RS16635 -1.2 -2.2 carbonate dehydratase compare
BWI76_RS20650 -1.2 -0.8 phosphoenolpyruvate--protein phosphotransferase compare
BWI76_RS20900 -1.2 -0.8 outer membrane protein assembly factor BamC compare
BWI76_RS27290 -1.2 -4.5 hypothetical protein compare
BWI76_RS15810 -1.2 -5.0 hypothetical protein compare
BWI76_RS26440 -1.2 -1.3 hypothetical protein compare
BWI76_RS04525 -1.2 -0.9 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
BWI76_RS14835 -1.2 -1.2 hypothetical protein compare
BWI76_RS04510 -1.2 -1.8 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
BWI76_RS24500 -1.2 -2.6 urease subunit gamma compare
BWI76_RS07780 -1.2 -1.2 hypothetical protein compare
BWI76_RS08260 -1.2 -2.4 LysR family transcriptional regulator compare
BWI76_RS01200 -1.2 -1.4 diaminopimelate epimerase compare
BWI76_RS04845 -1.2 -5.6 nicotinate-nucleotide pyrophosphorylase compare
BWI76_RS23915 -1.1 -1.8 5-formyltetrahydrofolate cyclo-ligase compare
BWI76_RS18140 -1.1 -3.8 zinc ABC transporter permease compare
BWI76_RS20380 -1.1 -0.9 tRNA pseudouridine(38-40) synthase TruA compare
BWI76_RS15830 -1.1 -2.4 hypothetical protein compare
BWI76_RS09150 -1.1 -3.3 DNA-binding transcriptional repressor DeoR compare
BWI76_RS12145 -1.1 -2.0 hypothetical protein compare
BWI76_RS04305 -1.1 -0.8 molecular chaperone DnaJ compare
BWI76_RS21100 -1.1 -1.7 nucleoside-diphosphate kinase compare
BWI76_RS21165 -1.1 -1.4 Fe-S cluster assembly transcriptional regulator IscR compare
BWI76_RS18130 -1.1 -2.9 zinc ABC transporter substrate-binding protein compare
BWI76_RS13470 -1.1 -1.9 transporter compare
BWI76_RS07820 -1.0 -1.7 S-methyl-5-thioribose kinase compare
BWI76_RS04705 -1.0 -3.9 DNA-binding transcriptional regulator FruR compare
BWI76_RS00100 -1.0 -3.0 hypothetical protein compare
BWI76_RS00140 -1.0 -0.9 phosphate transport system regulator PhoU compare
BWI76_RS13965 -1.0 -2.0 binding-protein-dependent transport system inner membrane protein compare
BWI76_RS07465 -1.0 -1.9 TetR family transcriptional regulator compare
BWI76_RS20930 -1.0 -1.8 arsenate reductase (glutaredoxin) compare
BWI76_RS26075 -1.0 -2.7 DNA adenine methylase compare
BWI76_RS08825 -1.0 -1.8 cyclic pyranopterin monophosphate synthase MoaC compare
BWI76_RS06290 -1.0 -1.6 ACP phosphodiesterase compare
BWI76_RS19700 -1.0 -1.8 deoxyribonuclease IV compare
BWI76_RS19770 -1.0 -1.5 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase compare
BWI76_RS01275 -1.0 -4.9 LysR family transcriptional regulator compare
BWI76_RS25195 -1.0 -3.0 maltose metabolism regulator compare
BWI76_RS05120 -1.0 -5.2 bifunctional glycosyl transferase/transpeptidase compare
BWI76_RS02815 -1.0 -1.8 fructose-bisphosphatase class I compare
BWI76_RS15825 -1.0 -0.8 hypothetical protein compare
BWI76_RS01935 -1.0 -1.5 thiamin phosphate synthase compare
BWI76_RS12340 -0.9 -2.7 molecular chaperone Tir compare
BWI76_RS02990 -0.9 -2.4 aspartate carbamoyltransferase regulatory subunit compare
BWI76_RS25480 -0.9 -2.4 ribonuclease E/G compare
BWI76_RS23330 -0.9 -2.8 transcriptional regulator GalR compare
BWI76_RS27440 -0.9 -1.7 DNA helicase RecG compare
BWI76_RS19460 -0.9 -1.5 lipoprotein compare
BWI76_RS13590 -0.9 -1.4 hypothetical protein compare
BWI76_RS25220 -0.9 -1.9 outer membrane lipid asymmetry maintenance protein MlaD compare
BWI76_RS25505 -0.9 -4.0 RNase E specificity factor CsrD compare
BWI76_RS00605 -0.9 -5.0 alpha-galactosidase compare
BWI76_RS13250 -0.9 -0.9 cytochrome b561 compare
BWI76_RS19310 -0.9 -1.6 ABC transporter permease compare
BWI76_RS01080 -0.9 -4.6 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase compare
BWI76_RS18055 -0.9 -2.8 copper resistance protein D compare


Specific Phenotypes

For 12 genes in this experiment

For carbon source D-Raffinose pentahydrate in Klebsiella michiganensis M5al

For carbon source D-Raffinose pentahydrate across organisms