Experiment set4IT088 for Pseudomonas fluorescens FW300-N2E3

Compare to:

LB with Benzalkonium Chloride 0.01 mg/ml

200 most important genes:

  gene name fitness t score description  
AO353_23730 -3.7 -3.5 hypothetical protein compare
AO353_12995 -3.6 -4.9 LysR family transcriptional regulator conserved
AO353_13100 -3.2 -2.2 GTPase RsgA compare
AO353_22685 -3.2 -4.7 peroxidase compare
AO353_05145 -3.1 -5.2 ABC transporter permease compare
AO353_05130 -3.1 -2.1 anti-anti-sigma factor compare
AO353_17300 -3.1 -7.7 antibiotic transporter compare
AO353_06415 -3.1 -3.6 hypothetical protein compare
AO353_17290 -3.1 -5.4 multidrug transporter compare
AO353_17295 -3.0 -16.5 multidrug transporter compare
AO353_06585 -3.0 -6.8 hypothetical protein compare
AO353_12940 -2.9 -6.5 glycosyl transferase compare
AO353_12990 -2.9 -5.4 multidrug DMT transporter conserved
AO353_05135 -2.8 -8.4 toluene tolerance protein compare
AO353_00330 -2.8 -8.3 hypothetical protein compare
AO353_15905 -2.8 -5.8 outer membrane protein assembly factor BamB compare
AO353_04565 -2.7 -5.2 nucleoid-associated protein compare
AO353_07315 -2.7 -3.7 rRNA methyltransferase compare
AO353_07140 -2.7 -15.9 peptidase M23 compare
AO353_09900 -2.7 -10.0 phosphate ABC transporter permease compare
AO353_05150 -2.7 -4.4 ABC transporter ATP-binding protein compare
AO353_04190 -2.7 -2.6 glycerol-3-phosphate dehydrogenase compare
AO353_12950 -2.7 -7.1 polymerase compare
AO353_09905 -2.6 -9.0 phosphate-binding protein compare
AO353_14775 -2.6 -5.7 hypothetical protein compare
AO353_06455 -2.6 -3.4 D-alanyl-D-alanine carboxypeptidase compare
AO353_17645 -2.6 -9.9 peptidase M48 compare
AO353_05240 -2.5 -4.0 rod shape-determining protein MreD compare
AO353_13225 -2.5 -2.9 50S ribosomal protein L9 compare
AO353_09890 -2.5 -4.4 phosphate ABC transporter ATP-binding protein compare
AO353_04035 -2.5 -4.9 exclusion suppressor FxsA compare
AO353_08350 -2.5 -7.0 hypothetical protein compare
AO353_23735 -2.4 -8.2 AAA family ATPase compare
AO353_25990 -2.4 -6.1 aspartyl beta-hydroxylase compare
AO353_05140 -2.4 -7.3 outer membrane lipid asymmetry maintenance protein MlaD compare
AO353_12105 -2.4 -6.0 peptidase S41 compare
AO353_02940 -2.4 -4.3 DNA-binding protein compare
AO353_23720 -2.3 -4.2 BatB protein compare
AO353_23710 -2.3 -6.3 protein BatD compare
AO353_07355 -2.2 -4.7 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_00825 -2.2 -4.1 porin compare
AO353_23725 -2.2 -5.7 hypothetical protein compare
AO353_04490 -2.2 -8.6 murein transglycosylase compare
AO353_12500 -2.2 -2.5 shikimate kinase compare
AO353_09320 -2.2 -8.5 ATP-dependent DNA helicase RecG compare
AO353_05625 -2.2 -2.5 transcription elongation factor GreA compare
AO353_02190 -2.2 -11.5 hypothetical protein compare
AO353_01685 -2.1 -2.4 hypothetical protein compare
AO353_02010 -2.1 -6.9 glycosyl transferase family 1 compare
AO353_00835 -2.1 -6.6 transporter compare
AO353_12115 -2.1 -3.3 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_15900 -2.1 -2.4 GTP-binding protein compare
AO353_27650 -2.1 -4.4 cell division protein FtsK compare
AO353_09235 -2.1 -7.4 phosphoglucomutase compare
AO353_23715 -2.0 -6.4 hypothetical protein compare
AO353_00430 -2.0 -3.9 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_09240 -2.0 -2.7 acetylglutamate kinase compare
AO353_06040 -2.0 -3.8 exodeoxyribonuclease V subunit alpha compare
AO353_03580 -2.0 -4.0 ATP-dependent DNA helicase RuvB compare
AO353_03590 -1.9 -4.3 crossover junction endodeoxyribonuclease RuvC compare
AO353_27860 -1.9 -6.4 hypothetical protein compare
AO353_27865 -1.9 -9.9 hypothetical protein compare
AO353_18170 -1.9 -7.0 aspartyl beta-hydroxylase compare
AO353_12935 -1.9 -4.0 glycosyltransferase compare
AO353_09060 -1.8 -2.7 hypothetical protein compare
AO353_05420 -1.8 -2.3 peptide chain release factor 3 compare
AO353_08685 -1.8 -6.8 N-acetylglutamate synthase compare
AO353_11750 -1.8 -2.3 ATPase compare
AO353_12915 -1.8 -7.1 carbamoyltransferase compare
AO353_02015 -1.8 -6.2 acetyltransferase compare
AO353_17625 -1.8 -7.9 RNA polymerase subunit sigma compare
AO353_25550 -1.8 -5.6 4-amino-4-deoxy-L-arabinose transferase compare
AO353_07155 -1.7 -5.8 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_01975 -1.7 -6.8 glycosyl transferase compare
AO353_12460 -1.7 -6.9 malate dehydrogenase compare
AO353_12945 -1.7 -7.4 toluene tolerance protein compare
AO353_15170 -1.7 -2.6 cytochrome D ubiquinol oxidase subunit III compare
AO353_03615 -1.7 -2.9 cold-shock protein compare
AO353_27000 -1.7 -2.2 hypothetical protein compare
AO353_16360 -1.7 -7.8 RND transporter compare
AO353_03420 -1.7 -4.1 phosphogluconate dehydratase compare
AO353_15490 -1.7 -2.3 hypothetical protein compare
AO353_09000 -1.7 -4.7 argininosuccinate lyase compare
AO353_06045 -1.7 -5.9 exodeoxyribonuclease V subunit beta compare
AO353_13130 -1.6 -3.4 N-acetylmuramoyl-L-alanine amidase compare
AO353_13005 -1.6 -9.6 channel protein TolC conserved
AO353_20170 -1.6 -4.8 trigger factor compare
AO353_08880 -1.6 -2.6 exopolyphosphatase compare
AO353_07325 -1.6 -1.8 diadenosine tetraphosphatase compare
AO353_12790 -1.6 -2.5 hypothetical protein compare
AO353_06495 -1.6 -4.5 gamma-glutamyl phosphate reductase compare
AO353_08265 -1.6 -4.9 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO353_02710 -1.6 -8.8 (p)ppGpp synthetase compare
AO353_03710 -1.6 -2.2 formyltetrahydrofolate deformylase compare
AO353_12930 -1.5 -2.8 GlcNAc-PI de-N-acetylase compare
AO353_03795 -1.5 -3.8 fumarate hydratase compare
AO353_17975 -1.5 -6.1 arabinose ABC transporter permease compare
AO353_26835 -1.5 -3.0 transcriptional regulator compare
AO353_04500 -1.5 -2.4 DNA repair protein RecO compare
AO353_02690 -1.5 -7.6 dehydrogenase compare
AO353_09050 -1.5 -3.7 recombinase XerC compare
AO353_06050 -1.5 -5.2 exodeoxyribonuclease V subunit gamma compare
AO353_04355 -1.5 -2.2 homoserine dehydrogenase compare
AO353_13200 -1.5 -8.1 exoribonuclease R compare
AO353_10630 -1.5 -4.8 16S rRNA methyltransferase compare
AO353_28110 -1.5 -4.5 TetR family transcriptional regulator compare
AO353_18285 -1.4 -2.5 3-phosphoglycerate kinase compare
AO353_20185 -1.4 -5.2 DNA-binding protein compare
AO353_01985 -1.4 -7.6 hypothetical protein compare
AO353_26055 -1.4 -2.5 hypothetical protein compare
AO353_10930 -1.4 -6.5 DNA polymerase I compare
AO353_17885 -1.4 -2.1 hypothetical protein compare
AO353_00635 -1.4 -3.0 hypothetical protein compare
AO353_29215 -1.4 -2.1 alpha/beta hydrolase compare
AO353_16365 -1.4 -10.7 multidrug transporter AcrB compare
AO353_02005 -1.4 -1.7 hypothetical protein compare
AO353_02250 -1.4 -2.6 chorismate synthase compare
AO353_02660 -1.4 -4.0 peptidase P60 compare
AO353_14740 -1.4 -3.1 GTP-binding protein compare
AO353_19295 -1.4 -1.6 hypothetical protein compare
AO353_24260 -1.4 -1.9 hypothetical protein compare
AO353_15185 -1.4 -3.9 ATPase compare
AO353_13140 -1.3 -4.3 tRNA dimethylallyltransferase compare
AO353_16035 -1.3 -7.1 Lon protease compare
AO353_00360 -1.3 -4.1 ATPase compare
AO353_12880 -1.3 -2.3 ADP-heptose--LPS heptosyltransferase compare
AO353_18780 -1.3 -5.2 cobyrinic acid a,c-diamide synthase compare
AO353_00890 -1.3 -4.2 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
AO353_14495 -1.3 -7.2 acetolactate synthase 3 catalytic subunit compare
AO353_11730 -1.3 -6.6 glutamate--cysteine ligase compare
AO353_17675 -1.3 -4.4 hypothetical protein compare
AO353_13160 -1.3 -1.8 membrane protease HflC compare
AO353_08775 -1.3 -2.0 cell division protein ZapA compare
AO353_01970 -1.3 -7.3 hypothetical protein compare
AO353_22800 -1.2 -2.5 sulfite reductase compare
AO353_00750 -1.2 -3.4 GntR family transcriptional regulator compare
AO353_28425 -1.2 -3.0 TetR family transcriptional regulator compare
AO353_20815 -1.2 -2.8 LacI family transcriptional regulator compare
AO353_20790 -1.2 -3.0 penicillin-binding protein activator LpoB compare
AO353_08600 -1.2 -3.4 TetR family transcriptional regulator compare
AO353_09895 -1.2 -4.9 phosphate ABC transporter permease compare
AO353_09250 -1.2 -2.6 exodeoxyribonuclease III compare
AO353_16495 -1.2 -4.2 zinc metallopeptidase RseP compare
AO353_02025 -1.2 -6.6 mannose-1-phosphate guanyltransferase compare
AO353_12420 -1.1 -2.5 predicted FeS cluster maintenance protein (from data) compare
AO353_02450 -1.1 -4.0 hypothetical protein compare
AO353_19605 -1.1 -1.8 hypothetical protein compare
AO353_10055 -1.1 -7.3 DNA helicase II compare
AO353_17035 -1.1 -4.1 hypothetical protein compare
AO353_03605 -1.1 -1.0 FmdB family transcriptional regulator compare
AO353_21430 -1.1 -2.8 hypothetical protein compare
AO353_24255 -1.1 -2.6 hypothetical protein compare
AO353_20585 -1.1 -2.6 TetR family transcriptional regulator compare
AO353_04175 -1.1 -3.7 glycerol uptake facilitator GlpF compare
AO353_12090 -1.1 -2.1 imidazole glycerol phosphate synthase subunit HisF compare
AO353_21625 -1.1 -2.0 Fe/S biogenesis protein NfuA compare
AO353_28165 -1.1 -3.2 ABC transporter substrate-binding protein compare
AO353_01995 -1.1 -7.3 hypothetical protein compare
AO353_12765 -1.1 -2.3 transcriptional regulator compare
AO353_12665 -1.1 -1.5 glycosyl transferase compare
AO353_05225 -1.1 -8.1 hypothetical protein compare
AO353_03815 -1.1 -0.9 heme utilization protein compare
AO353_01595 -1.1 -1.8 Flp pilus assembly protein CpaB compare
AO353_11225 -1.1 -3.9 disulfide bond formation protein DsbA compare
AO353_24425 -1.0 -2.4 amino acid ABC transporter permease compare
AO353_05465 -1.0 -7.4 flavodoxin compare
AO353_03290 -1.0 -1.1 peptide deformylase compare
AO353_06745 -1.0 -1.6 zinc-binding protein compare
AO353_20680 -1.0 -2.5 cell division protein compare
AO353_26900 -1.0 -3.7 glycerate kinase compare
AO353_16940 -1.0 -3.8 deoxycytidine triphosphate deaminase compare
AO353_08165 -1.0 -2.0 pyrroline-5-carboxylate reductase compare
AO353_01990 -1.0 -4.2 UDP-N-acetylglucosamine 2-epimerase compare
AO353_09315 -1.0 -5.6 LysR family transcriptional regulator compare
AO353_14420 -1.0 -2.8 molecular chaperone DnaK compare
AO353_25845 -1.0 -1.8 GNAT family acetyltransferase compare
AO353_13720 -1.0 -7.2 arginine decarboxylase compare
AO353_02020 -1.0 -3.3 hypothetical protein compare
AO353_02000 -1.0 -2.2 polysaccharide/polyol phosphate ABC transporter ATP-binding protein compare
AO353_00515 -1.0 -2.1 hypothetical protein compare
AO353_29145 -1.0 -3.2 HxlR family transcriptional regulator compare
AO353_19610 -1.0 -2.2 hypothetical protein compare
AO353_22920 -1.0 -3.4 GntR family transcriptional regulator compare
AO353_04220 -0.9 -3.8 chemotaxis protein CheY compare
AO353_20265 -0.9 -2.0 spore coat protein compare
AO353_03715 -0.9 -1.2 H-NS histone compare
AO353_00355 -0.9 -2.1 transcriptional regulator compare
AO353_05010 -0.9 -1.4 HopJ type III effector protein compare
AO353_27680 -0.9 -3.6 ATP-dependent Clp protease adaptor ClpS compare
AO353_25505 -0.9 -5.3 4-amino-4-deoxy-L-arabinose transferase compare
AO353_02945 -0.9 -4.6 magnesium transporter compare
AO353_00650 -0.9 -1.6 cytochrome biogenesis protein compare
AO353_14500 -0.9 -3.7 acetolactate synthase 3 regulatory subunit compare
AO353_12110 -0.9 -4.6 peptidase M23 compare
AO353_25530 -0.9 -2.9 UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase compare
AO353_23285 -0.9 -1.9 hypothetical protein compare
AO353_04005 -0.9 -3.0 hypothetical protein compare
AO353_11165 -0.9 -5.4 hypothetical protein compare
AO353_12130 -0.9 -1.8 preprotein translocase subunit SecB compare
AO353_06325 -0.9 -2.4 hypothetical protein compare


Specific Phenotypes

For 8 genes in this experiment

For stress Benzalkonium Chloride in Pseudomonas fluorescens FW300-N2E3

For stress Benzalkonium Chloride across organisms