Experiment set4IT088 for Methanococcus maripaludis S2

Compare to:

Formate deepwell acetate and vitamin FREE

200 most important genes:

  gene name fitness t score description  
MMP_RS06680 -9.0 -13.8 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS06895 -8.1 -3.9 selenocysteine-specific translation elongation factor compare
MMP_RS06400 -7.3 -3.6 4Fe-4S binding protein compare
MMP_RS06700 -7.1 -15.2 hypothetical protein compare
MMP_RS06685 -6.9 -14.8 formate dehydrogenase H subunit alpha selenocysteine-containing compare
MMP_RS01500 -6.6 -4.1 CBS domain-containing protein compare
MMP_RS06345 -6.5 -9.6 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMP_RS04710 -6.5 -3.2 hypothetical protein compare
MMP_RS03015 -6.3 -12.1 GTP 3' 8-cyclase MoaA compare
MMP_RS01175 -6.1 -6.4 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS01020 -6.1 -1.7 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS08105 -6.0 -9.1 6-carboxyhexanoate--CoA ligase compare
MMP_RS06625 -5.9 -4.4 DNA primase compare
MMP_RS06715 -5.8 -20.2 cache domain-containing protein compare
MMP_RS06720 -5.8 -9.1 response regulator transcription factor compare
MMP_RS06350 -5.8 -8.5 HesA/MoeB/ThiF family protein compare
MMP_RS02280 -5.7 -1.6 DUF211 domain-containing protein compare
MMP_RS04605 -5.7 -7.9 cobalt ECF transporter T component CbiQ compare
MMP_RS08720 -5.6 -3.1 4Fe-4S binding protein compare
MMP_RS00305 -5.6 -3.5 phosphoribosyl-ATP diphosphatase compare
MMP_RS06705 -5.5 -10.1 formate/nitrite transporter family protein compare
MMP_RS06285 -5.5 -4.6 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS08210 -5.3 -4.4 phosphatidylglycerophosphatase A compare
MMP_RS06975 -5.3 -3.9 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMP_RS01005 -5.3 -2.1 riboflavin synthase compare
MMP_RS06475 -5.3 -8.3 FAD-dependent oxidoreductase compare
MMP_RS06925 -5.2 -4.9 ribonuclease VapC4 compare
MMP_RS05515 -5.1 -7.5 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS03025 -5.0 -10.6 molybdenum cofactor guanylyltransferase compare
MMP_RS00300 -4.9 -1.4 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS01800 -4.9 -7.9 TIGR00303 family protein compare
MMP_RS07445 -4.9 -7.7 helix-turn-helix domain-containing protein compare
MMP_RS04775 -4.9 -6.6 adenosylhomocysteinase compare
MMP_RS04500 -4.9 -19.8 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMP_RS02240 -4.8 -4.9 methanogenesis marker 7 protein compare
MMP_RS08095 -4.8 -9.7 dethiobiotin synthase compare
MMP_RS08645 -4.7 -10.9 UPF0179 family protein compare
MMP_RS07730 -4.7 -3.9 pyruvate synthase subunit beta compare
MMP_RS06295 -4.7 -11.0 methanogenesis marker 14 protein compare
MMP_RS02145 -4.7 -12.4 winged helix-turn-helix transcriptional regulator compare
MMP_RS06120 -4.7 -4.2 UPF0147 family protein compare
MMP_RS03315 -4.7 -3.0 ferrous iron transport protein A compare
MMP_RS05920 -4.7 -1.3 50S ribosomal protein L37e compare
MMP_RS03035 -4.6 -7.0 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS04585 -4.5 -11.1 AIR synthase related protein compare
MMP_RS07645 -4.5 -7.4 aldehyde dehydrogenase family protein compare
MMP_RS08460 -4.5 -5.2 proteasome-activating nucleotidase compare
MMP_RS06370 -4.4 -6.2 biotin synthase BioB compare
MMP_RS08100 -4.4 -10.8 8-amino-7-oxononanoate synthase compare
MMP_RS07380 -4.4 -4.9 transcription elongation factor Spt5 compare
MMP_RS03600 -4.4 -4.7 triose-phosphate isomerase compare
MMP_RS07195 -4.3 -17.4 M20 family metallo-hydrolase compare
MMP_RS08745 -4.3 -11.0 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS00685 -4.2 -7.5 2-phospho-L-lactate guanylyltransferase compare
MMP_RS06355 -4.2 -3.6 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS06230 -4.2 -5.6 helix-turn-helix domain-containing protein compare
MMP_RS00515 -4.2 -1.7 DUF655 domain-containing protein compare
MMP_RS03580 -4.2 -5.1 signal recognition particle-docking protein FtsY compare
MMP_RS05930 -4.1 -4.7 3-isopropylmalate dehydratase large subunit compare
MMP_RS01380 -4.1 -6.1 PHP domain-containing protein compare
MMP_RS04620 -4.1 -12.7 cobalt transporter CbiM compare
MMP_RS07635 -4.1 -8.4 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS04615 -4.1 -7.8 PDGLE domain-containing protein compare
MMP_RS08650 -4.0 -5.2 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMP_RS08820 -4.0 -8.3 hypothetical protein compare
MMP_RS05845 -4.0 -3.3 tRNA-intron lyase compare
MMP_RS01225 -3.9 -8.9 DUF5379 domain-containing protein compare
MMP_RS01985 -3.9 -10.7 F420-dependent methylenetetrahydromethanopterin dehydrogenase compare
MMP_RS04890 -3.9 -1.6 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS04780 -3.8 -5.5 ribonuclease P compare
MMP_RS08715 -3.8 -4.1 formylmethanofuran dehydrogenase subunit B compare
MMP_RS04685 -3.8 -5.1 DUF126 domain-containing protein compare
MMP_RS07390 -3.8 -4.2 cell division protein FtsZ compare
MMP_RS02900 -3.7 -1.5 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS01610 -3.6 -6.4 hypothetical protein compare
MMP_RS03640 -3.6 -6.4 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS06340 -3.6 -12.0 phosphoadenosine phosphosulfate reductase family protein compare
MMP_RS06270 -3.5 -7.7 TIGR00300 family protein compare
MMP_RS01545 -3.4 -2.3 CBS domain-containing protein compare
MMP_RS07580 -3.4 -4.6 DUF356 domain-containing protein compare
MMP_RS06730 -3.4 -4.0 phosphopantothenate/pantothenate synthetase compare
MMP_RS00110 -3.4 -5.4 hypothetical protein compare
MMP_RS07605 -3.4 -3.9 diadenylate cyclase compare
MMP_RS07845 -3.3 -3.5 LL-diaminopimelate aminotransferase compare
MMP_RS07525 -3.3 -7.1 4Fe-4S binding protein compare
MMP_RS06020 -3.3 -4.5 archaeoflavoprotein AfpA compare
MMP_RS08790 -3.3 -4.7 translation initiation factor IF-2 subunit alpha compare
MMP_RS08635 -3.3 -3.3 UbiA family prenyltransferase compare
MMP_RS01265 -3.2 -2.6 hypothetical protein compare
MMP_RS02875 -3.1 -14.4 chorismate pyruvate-lyase family protein compare
MMP_RS05265 -3.1 -4.5 2-isopropylmalate synthase compare
MMP_RS07630 -3.1 -2.7 ATP-binding cassette domain-containing protein compare
MMP_RS08440 -3.1 -4.5 cell division protein SepF compare
MMP_RS05345 -3.1 -10.5 hypothetical protein compare
MMP_RS00115 -3.1 -15.7 radical SAM protein compare
MMP_RS03400 -3.0 -4.0 archease compare
MMP_RS00320 -3.0 -4.0 class I SAM-dependent methyltransferase compare
MMP_RS02355 -3.0 -5.4 30S ribosomal protein S27ae compare
MMP_RS07600 -3.0 -4.8 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS03155 -3.0 -10.3 precorrin-6A reductase compare
MMP_RS02195 -3.0 -7.2 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS00895 -3.0 -5.6 hypothetical protein compare
MMP_RS03700 -3.0 -10.2 sodium:proton antiporter compare
MMP_RS03445 -2.9 -2.0 methanogenesis marker 17 protein compare
MMP_RS07005 -2.9 -1.4 4Fe-4S binding protein compare
MMP_RS08435 -2.8 -3.4 Era-like GTP-binding protein compare
MMP_RS01755 -2.8 -2.1 DUF2097 domain-containing protein compare
MMP_RS03960 -2.8 -1.7 hypothetical protein compare
MMP_RS05095 -2.8 -13.3 CO dehydrogenase/acetyl-CoA synthase complex subunit epsilon compare
MMP_RS09020 -2.8 -3.2 hypothetical protein compare
MMP_RS01325 -2.8 -3.3 dihydroneopterin aldolase family protein compare
MMP_RS03435 -2.8 -3.0 ketol-acid reductoisomerase compare
MMP_RS01220 -2.7 -11.1 hypothetical protein compare
MMP_RS02135 -2.7 -6.8 DUF5612 domain-containing protein compare
MMP_RS03475 -2.7 -1.3 hypothetical protein compare
MMP_RS01980 -2.7 -16.2 trimeric intracellular cation channel family protein compare
MMP_RS06105 -2.7 -11.7 hydrogenase maturation peptidase HycI compare
MMP_RS05085 -2.7 -11.8 AAA family ATPase compare
MMP_RS06630 -2.6 -2.2 UPF0058 family protein compare
MMP_RS07545 -2.6 -2.0 HTH domain-containing protein compare
MMP_RS05440 -2.6 -11.5 winged helix-turn-helix transcriptional regulator compare
MMP_RS02340 -2.6 -3.4 DNA-directed RNA polymerase subunit E'' compare
MMP_RS05080 -2.6 -15.5 acetyl-CoA decarbonylase/synthase complex subunit delta compare
MMP_RS05100 -2.6 -19.0 CO dehydrogenase/acetyl-CoA synthase complex subunit alpha compare
MMP_RS05090 -2.5 -10.0 CO dehydrogenase/CO-methylating acetyl-CoA synthase complex subunit beta compare
MMP_RS01960 -2.5 -1.4 hypothetical protein compare
MMP_RS00295 -2.5 -3.9 gamma carbonic anhydrase family protein compare
MMP_RS07200 -2.4 -8.2 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS08445 -2.4 -5.2 DUF2099 family protein compare
MMP_RS05075 -2.4 -16.9 acetyl-CoA decarbonylase/synthase complex subunit gamma compare
MMP_RS00695 -2.4 -1.7 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS05055 -2.4 -15.9 DUF166 domain-containing protein compare
MMP_RS05060 -2.4 -16.8 AAA family ATPase compare
MMP_RS05430 -2.3 -4.9 TIGR00288 family NYN domain-containing protein compare
MMP_RS06930 -2.3 -11.1 MBL fold metallo-hydrolase compare
MMP_RS06885 -2.3 -5.0 50S ribosome-binding GTPase compare
MMP_RS01830 -2.2 -3.4 tRNA-Val compare
MMP_RS03205 -2.1 -2.1 peptidyl-tRNA hydrolase Pth2 compare
MMP_RS07735 -2.1 -1.4 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha compare
MMP_RS08300 -2.1 -1.8 metal-sulfur cluster assembly factor compare
MMP_RS05070 -2.1 -10.5 4Fe-4S dicluster domain-containing protein compare
MMP_RS01795 -2.1 -3.1 methanogenesis marker 6 protein compare
MMP_RS01725 -2.1 -4.4 class I SAM-dependent methyltransferase family protein compare
MMP_RS06940 -2.0 -2.7 polyprenyl diphosphate synthase compare
MMP_RS04720 -2.0 -3.3 DedA family protein compare
MMP_RS07575 -2.0 -5.5 RNA ligase partner protein compare
MMP_RS06215 -2.0 -4.6 30S ribosomal protein S6e compare
MMP_RS00450 -2.0 -3.2 4Fe-4S binding protein compare
MMP_RS05065 -2.0 -8.9 CooT family nickel-binding protein compare
MMP_RS00040 -1.9 -7.8 TIGR03576 family pyridoxal phosphate-dependent enzyme compare
MMP_RS01475 -1.9 -8.3 phosphosulfolactate synthase compare
MMP_RS07685 -1.9 -7.9 TIGR01212 family radical SAM protein compare
MMP_RS02010 -1.9 -8.8 PHP domain-containing protein compare
MMP_RS01840 -1.9 -8.1 TIGR00289 family protein compare
MMP_RS02345 -1.8 -3.5 GTP-dependent dephospho-CoA kinase family protein compare
MMP_RS03095 -1.8 -7.9 diphthine synthase compare
MMP_RS06315 -1.8 -2.0 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMP_RS05250 -1.8 -1.9 NFYB/HAP3 family transcription factor subunit compare
MMP_RS00985 -1.8 -4.9 CDC48 family AAA ATPase compare
MMP_RS01385 -1.8 -1.2 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS00620 -1.8 -9.7 4Fe-4S binding protein compare
MMP_RS02165 -1.8 -10.8 tRNA-dihydrouridine synthase compare
MMP_RS05540 -1.7 -3.0 hypothetical protein compare
MMP_RS08785 -1.7 -2.0 RNA-protein complex protein Nop10 compare
MMP_RS01895 -1.7 -10.0 flippase compare
MMP_RS07365 -1.7 -10.4 2-phosphoglycerate kinase compare
MMP_RS05850 -1.6 -6.6 Ldh family oxidoreductase compare
MMP_RS00050 -1.6 -8.6 AarF/UbiB family protein compare
MMP_RS02190 -1.6 -2.4 sulfopyruvate decarboxylase subunit alpha compare
MMP_RS07425 -1.6 -5.7 GTP-binding protein compare
MMP_RS05815 -1.5 -2.9 NOL1/NOP2/sun family putative RNA methylase compare
MMP_RS01910 -1.5 -6.2 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMP_RS07420 -1.5 -3.6 metalloregulator ArsR/SmtB family transcription factor compare
MMP_RS01700 -1.5 -1.7 dihydroxy-acid dehydratase compare
MMP_RS06130 -1.5 -4.2 peptidylprolyl isomerase compare
MMP_RS07710 -1.5 -6.0 cell division protein FtsZ compare
MMP_RS01365 -1.5 -1.7 archaeal proteasome endopeptidase complex subunit alpha compare
MMP_RS01180 -1.5 -1.4 XTP/dITP diphosphatase compare
MMP_RS07755 -1.5 -1.9 DUF555 domain-containing protein compare
MMP_RS02235 -1.5 -8.4 CBS domain-containing protein compare
MMP_RS07750 -1.4 -5.3 DUF357 domain-containing protein compare
MMP_RS05245 -1.4 -8.6 archaeosine biosynthesis radical SAM protein RaSEA compare
MMP_RS05765 -1.4 -6.8 M42 family metallopeptidase compare
MMP_RS00850 -1.4 -5.2 TIGR01177 family methyltransferase compare
MMP_RS07875 -1.4 -7.0 hypothetical protein compare
MMP_RS01335 -1.4 -2.8 prefoldin subunit beta compare
MMP_RS06865 -1.3 -1.2 HypC/HybG/HupF family hydrogenase formation chaperone compare
MMP_RS07075 -1.3 -4.2 phosphomannomutase/phosphoglucomutase compare
MMP_RS06980 -1.3 -6.4 tRNA 2-thiocytidine biosynthesis TtcA family protein compare
MMP_RS01445 -1.3 -6.2 hypothetical protein compare
MMP_RS04870 -1.3 -3.5 TIGR02253 family HAD-type hydrolase compare
MMP_RS00720 -1.3 -6.8 metal-dependent hydrolase compare
MMP_RS00915 -1.3 -7.8 DUF116 domain-containing protein compare
MMP_RS05640 -1.3 -3.8 UTP--glucose-1-phosphate uridylyltransferase GalU compare
MMP_RS03140 -1.3 -7.9 hypothetical protein compare
MMP_RS05445 -1.2 -7.3 CoB--CoM heterodisulfide reductase subunit B compare
MMP_RS01955 -1.2 -1.9 hypothetical protein compare
MMP_RS01250 -1.2 -4.2 tRNA (guanine(26)-N(2))-dimethyltransferase compare
MMP_RS07790 -1.2 -7.8 segregation/condensation protein A compare
MMP_RS08690 -1.2 -8.0 RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5 compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in nutrient t2 experiments

For nutrient t2 casamino acids across organisms