Experiment set4IT088 for Paraburkholderia bryophila 376MFSha3.1

Compare to:

D-Glucose 20 mM carbon source

200 most detrimental genes:

  gene name fitness t score description  
H281DRAFT_01184 +2.1 2.9 3-oxoacyl-[acyl-carrier protein] reductase compare
H281DRAFT_02683 +2.0 2.9 xanthine dehydrogenase accessory factor compare
H281DRAFT_02791 +1.8 3.3 apolipoprotein D and lipocalin family protein compare
H281DRAFT_06120 +1.6 2.1 hypothetical protein compare
H281DRAFT_00379 +1.5 2.2 dihydroorotate oxidase B, catalytic subunit /dihydrouracil dehydrogenase (NAD+) /dihydropyrimidine dehydrogenase (NADP+) compare
H281DRAFT_03409 +1.4 2.5 Protein of unknown function (DUF3072) compare
H281DRAFT_05376 +1.3 2.9 hypothetical protein compare
H281DRAFT_04390 +1.2 8.2 ATP-binding cassette, subfamily B compare
H281DRAFT_06474 +1.2 2.5 amino acid ABC transporter membrane protein 1, PAAT family compare
H281DRAFT_01457 +1.1 2.1 hypothetical protein compare
H281DRAFT_05778 +1.1 2.3 flagellar motor switch protein FliN/FliY compare
H281DRAFT_03440 +1.1 1.2 PAP2 superfamily protein compare
H281DRAFT_00757 +1.1 1.5 hypothetical protein compare
H281DRAFT_06567 +1.0 1.7 hypothetical protein compare
H281DRAFT_04391 +1.0 8.3 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_00255 +1.0 2.7 hypothetical protein compare
H281DRAFT_04857 +1.0 1.7 hypothetical protein compare
H281DRAFT_01413 +1.0 1.5 hypothetical protein compare
H281DRAFT_02503 +1.0 2.3 Peroxiredoxin compare
H281DRAFT_05545 +1.0 1.8 NitT/TauT family transport system ATP-binding protein compare
H281DRAFT_02705 +0.9 2.3 monosaccharide ABC transporter substrate-binding protein, CUT2 family compare
H281DRAFT_01689 +0.9 1.7 transcriptional regulator, AraC family with amidase-like domain compare
H281DRAFT_02753 +0.9 2.2 Predicted dehydrogenase compare
H281DRAFT_03047 +0.9 1.7 protein of unknown function (DUF4148) compare
H281DRAFT_00487 +0.9 1.5 bacterial peptide chain release factor 2 (bRF-2) compare
H281DRAFT_04947 +0.9 3.2 putative spermidine/putrescine transport system substrate-binding protein compare
H281DRAFT_06555 +0.9 2.5 hypothetical protein compare
H281DRAFT_02346 +0.9 2.4 general secretion pathway protein M compare
H281DRAFT_00298 +0.9 1.5 hypothetical protein compare
H281DRAFT_05756 +0.9 2.7 RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG compare
H281DRAFT_03061 +0.9 3.0 hypothetical protein compare
H281DRAFT_02193 +0.9 1.9 hypothetical protein compare
H281DRAFT_04781 +0.8 1.3 putative colanic acid biosynthesis acetyltransferase WcaF compare
H281DRAFT_02508 +0.8 1.6 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_01305 +0.8 1.9 hypothetical protein compare
H281DRAFT_02224 +0.8 1.4 rod shape-determining protein MreC compare
H281DRAFT_06163 +0.8 1.3 hypothetical protein compare
H281DRAFT_05770 +0.8 3.8 flagellar protein FlgJ compare
H281DRAFT_02292 +0.8 3.1 amino acid ABC transporter substrate-binding protein, PAAT family compare
H281DRAFT_05465 +0.8 2.4 hypothetical protein compare
H281DRAFT_01599 +0.8 1.3 GTP cyclohydrolase I compare
H281DRAFT_06468 +0.8 2.4 Ribulose-5-phosphate 4-epimerase/Fuculose-1-phosphate aldolase compare
H281DRAFT_06576 +0.8 2.7 CheY chemotaxis protein or a CheY-like REC (receiver) domain compare
H281DRAFT_03314 +0.8 1.2 hypothetical protein compare
H281DRAFT_00972 +0.8 1.2 lactaldehyde dehydrogenase / glycolaldehyde dehydrogenase compare
H281DRAFT_03036 +0.8 2.1 hypothetical protein compare
H281DRAFT_00658 +0.8 1.7 transcriptional regulator, IclR family compare
H281DRAFT_06419 +0.8 1.2 putative toxin-antitoxin system antitoxin component, TIGR02293 family compare
H281DRAFT_01436 +0.8 1.3 NTE family protein compare
H281DRAFT_01390 +0.8 1.2 hypothetical protein compare
H281DRAFT_04400 +0.7 5.5 membrane-bound lytic murein transglycosylase D compare
H281DRAFT_05961 +0.7 1.2 D-3-phosphoglycerate dehydrogenase compare
H281DRAFT_05079 +0.7 2.2 small conductance mechanosensitive channel compare
H281DRAFT_02859 +0.7 3.0 precorrin-6A reductase (EC 1.3.1.54) compare
H281DRAFT_05754 +0.7 2.9 flagellar biosynthesis protein FlhF compare
H281DRAFT_01403 +0.7 1.5 hypothetical protein compare
H281DRAFT_04958 +0.7 1.8 glutamate racemase compare
H281DRAFT_02581 +0.7 0.9 3-oxoacyl-[acyl-carrier protein] reductase compare
H281DRAFT_06177 +0.7 4.6 hypothetical protein compare
H281DRAFT_00469 +0.7 1.9 phasin family protein compare
H281DRAFT_00927 +0.7 3.2 UPF0755 protein compare
H281DRAFT_06286 +0.7 2.0 Thiol-disulfide isomerase or thioredoxin compare
H281DRAFT_00285 +0.7 2.6 PhnB protein compare
H281DRAFT_05646 +0.7 2.4 hypothetical protein compare
H281DRAFT_05764 +0.7 2.2 flagellar basal-body rod modification protein FlgD compare
H281DRAFT_01388 +0.7 2.7 Uncharacterized conserved protein, DUF2252 family compare
H281DRAFT_03155 +0.7 1.9 Protein of unknown function (DUF3311) compare
H281DRAFT_03094 +0.7 1.0 transcriptional regulator, MarR family compare
H281DRAFT_06422 +0.7 0.8 hypothetical protein compare
H281DRAFT_00470 +0.7 4.2 murein-DD-endopeptidase. Serine peptidase. MEROPS family S11 compare
H281DRAFT_01088 +0.7 1.2 Lactate dehydrogenase compare
H281DRAFT_06168 +0.7 1.6 hypothetical protein compare
H281DRAFT_06002 +0.7 2.2 NADPH:quinone reductase compare
H281DRAFT_01749 +0.7 1.5 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
H281DRAFT_03460 +0.7 0.9 Protein of unknown function (DUF2950) compare
H281DRAFT_01377 +0.7 1.1 hypothetical protein compare
H281DRAFT_01584 +0.7 1.1 enamidase compare
H281DRAFT_01223 +0.7 1.9 monosaccharide ABC transporter ATP-binding protein, CUT2 family compare
H281DRAFT_02651 +0.7 1.1 transcriptional regulator, MerR family compare
H281DRAFT_03443 +0.7 0.9 Undecaprenyl-phosphate glucose phosphotransferase compare
H281DRAFT_03863 +0.7 1.0 D-alanyl-D-alanine carboxypeptidase compare
H281DRAFT_04722 +0.7 1.8 Cell division and transport-associated protein TolQ compare
H281DRAFT_03227 +0.7 1.8 transcriptional regulator, LacI family compare
H281DRAFT_01666 +0.7 1.9 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39) compare
H281DRAFT_06531 +0.7 2.6 cob(II)yrinic acid a,c-diamide reductase /5,6-dimethylbenzimidazole synthase compare
H281DRAFT_01151 +0.7 3.3 ceramide glucosyltransferase compare
H281DRAFT_00386 +0.7 1.5 hypothetical protein compare
H281DRAFT_01002 +0.7 1.1 two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ compare
H281DRAFT_00875 +0.7 2.6 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
H281DRAFT_06355 +0.7 1.8 4-oxalomesaconate hydratase compare
H281DRAFT_04998 +0.6 1.2 type III secretion protein T compare
H281DRAFT_02691 +0.6 1.9 transcriptional regulator, ArsR family compare
H281DRAFT_04792 +0.6 0.7 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_03432 +0.6 2.2 TupA-like ATPgrasp compare
H281DRAFT_06032 +0.6 2.1 peroxiredoxin, Ohr subfamily compare
H281DRAFT_05021 +0.6 0.8 Response regulator compare
H281DRAFT_00377 +0.6 1.2 N-carbamoyl-L-amino-acid hydrolase compare
H281DRAFT_05781 +0.6 2.2 flagellar hook-length control protein FliK compare
H281DRAFT_06010 +0.6 2.3 hypothetical protein compare
H281DRAFT_01534 +0.6 2.5 tartrate dehydrogenase/decarboxylase / D-malate dehydrogenase compare
H281DRAFT_03796 +0.6 1.8 protein of unknown function (DUF4148) compare
H281DRAFT_04880 +0.6 1.0 PRC-barrel domain-containing protein compare
H281DRAFT_03732 +0.6 1.6 carbohydrate ABC transporter membrane protein 1, CUT1 family compare
H281DRAFT_01047 +0.6 1.2 GTP cyclohydrolase II compare
H281DRAFT_02966 +0.6 1.4 nucleoside-binding protein compare
H281DRAFT_05980 +0.6 1.7 Catechol 2,3-dioxygenase compare
H281DRAFT_01216 +0.6 3.1 hypothetical protein compare
H281DRAFT_05321 +0.6 2.6 uronate dehydrogenase compare
H281DRAFT_03307 +0.6 2.3 Cytochrome c oxidase assembly factor CtaG compare
H281DRAFT_00359 +0.6 1.3 Acyl-CoA dehydrogenase compare
H281DRAFT_05769 +0.6 3.5 flagellar P-ring protein precursor FlgI compare
H281DRAFT_01311 +0.6 0.9 fructose-bisphosphate aldolase compare
H281DRAFT_04607 +0.6 1.1 hypothetical protein compare
H281DRAFT_00782 +0.6 1.1 transcriptional regulator, LysR family compare
H281DRAFT_00326 +0.6 1.0 pyrroloquinoline quinone biosynthesis protein D compare
H281DRAFT_00644 +0.6 2.9 2-deoxy-D-ribonate 3-dehydrogenase (from data) compare
H281DRAFT_01570 +0.6 2.2 luciferase-type oxidoreductase, BA3436 family compare
H281DRAFT_03486 +0.6 2.2 osmoprotectant transport system permease protein compare
H281DRAFT_03502 +0.6 1.2 2-aminoethylphosphonate transport system permease protein compare
H281DRAFT_01339 +0.6 2.1 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED compare
H281DRAFT_05003 +0.6 1.6 type III secretion apparatus lipoprotein, YscJ/HrcJ family compare
H281DRAFT_03437 +0.6 1.2 Glycosyltransferases involved in cell wall biogenesis compare
H281DRAFT_03198 +0.6 2.5 flagellar transcriptional activator FlhC compare
H281DRAFT_06089 +0.6 1.3 hypothetical protein compare
H281DRAFT_06335 +0.6 1.3 peptide/nickel transport system permease protein compare
H281DRAFT_02007 +0.6 4.7 phosphoenolpyruvate--protein phosphotransferase compare
H281DRAFT_02052 +0.6 1.0 hypothetical protein compare
H281DRAFT_02148 +0.6 1.5 cytochrome c compare
H281DRAFT_05901 +0.6 0.9 Cupin domain-containing protein compare
H281DRAFT_05274 +0.6 0.8 Uncharacterized protein YcsI, UPF0317 family compare
H281DRAFT_02102 +0.6 2.0 Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC compare
H281DRAFT_03389 +0.6 2.4 transcriptional regulator, LysR family compare
H281DRAFT_00340 +0.6 2.1 glutamine amidotransferase compare
H281DRAFT_05755 +0.6 1.6 flagellar biosynthesis protein FlhG compare
H281DRAFT_05225 +0.6 1.5 monosaccharide ABC transporter substrate-binding protein, CUT2 family compare
H281DRAFT_05371 +0.6 2.0 OmpA-OmpF porin, OOP family compare
H281DRAFT_00668 +0.6 2.2 tagaturonate reductase compare
H281DRAFT_05159 +0.6 1.8 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase compare
H281DRAFT_02188 +0.6 2.1 hypothetical protein compare
H281DRAFT_06253 +0.6 2.3 cell division protein ZapD compare
H281DRAFT_02611 +0.6 1.4 transcriptional regulator, RpiR family compare
H281DRAFT_05406 +0.6 1.5 putative spermidine/putrescine transport system permease protein compare
H281DRAFT_05779 +0.6 3.6 flagellar motor switch protein FliM compare
H281DRAFT_05445 +0.6 1.0 protein of unknown function (DUF4440) compare
H281DRAFT_00050 +0.6 0.9 Uncharacterized conserved protein, DUF1330 family compare
H281DRAFT_00916 +0.6 2.4 short chain enoyl-CoA hydratase /3-hydroxyacyl-CoA dehydrogenase compare
H281DRAFT_03849 +0.6 0.8 protein of unknown function (DUF4863) compare
H281DRAFT_01024 +0.6 1.3 hypothetical protein compare
H281DRAFT_01257 +0.6 1.2 Catechol 2,3-dioxygenase compare
H281DRAFT_02741 +0.6 1.1 Enoyl-CoA hydratase/carnithine racemase compare
H281DRAFT_01881 +0.6 1.1 two-component system, LuxR family, sensor kinase FixL compare
H281DRAFT_02702 +0.5 1.5 dihydroxyacetone kinase DhaK subunit compare
H281DRAFT_06369 +0.5 1.3 tight adherence protein B compare
H281DRAFT_01400 +0.5 2.8 cytochrome b561 compare
H281DRAFT_05528 +0.5 2.8 hypothetical protein compare
H281DRAFT_01829 +0.5 1.4 4-hydroxy-tetrahydrodipicolinate synthase compare
H281DRAFT_05752 +0.5 3.6 flagellar biosynthetic protein FlhB compare
H281DRAFT_01965 +0.5 0.9 hypothetical protein compare
H281DRAFT_01906 +0.5 2.0 cytochrome c oxidase subunit 2 compare
H281DRAFT_05214 +0.5 1.2 transcriptional regulator, LacI family compare
H281DRAFT_01237 +0.5 1.2 DnaJ-class molecular chaperone with C-terminal Zn finger domain compare
H281DRAFT_03613 +0.5 2.1 hypothetical protein compare
H281DRAFT_01101 +0.5 1.3 Small-conductance mechanosensitive channel compare
H281DRAFT_04996 +0.5 1.5 type III secretion protein C compare
H281DRAFT_02490 +0.5 1.0 amidase compare
H281DRAFT_04990 +0.5 1.1 type III secretion translocon protein HrpF compare
H281DRAFT_03790 +0.5 1.0 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
H281DRAFT_05992 +0.5 2.2 MFS transporter, MHS family, proline/betaine transporter compare
H281DRAFT_01988 +0.5 2.9 Cytochrome oxidase assembly protein ShyY1 compare
H281DRAFT_01731 +0.5 2.1 protein of unknown function (DUF4148) compare
H281DRAFT_06135 +0.5 0.9 hypothetical protein compare
H281DRAFT_06477 +0.5 1.4 transcriptional regulator, AraC family compare
H281DRAFT_02329 +0.5 1.3 dihydroxyacid dehydratase compare
H281DRAFT_05784 +0.5 1.7 flagellar assembly protein FliH compare
H281DRAFT_06297 +0.5 1.1 L-arabinose-binding protein compare
H281DRAFT_03192 +0.5 1.3 D-methionine transport system substrate-binding protein compare
H281DRAFT_05089 +0.5 1.2 ribosome-associated protein compare
H281DRAFT_00666 +0.5 1.5 altronate hydrolase compare
H281DRAFT_02003 +0.5 2.5 Rhodanese-related sulfurtransferase compare
H281DRAFT_04544 +0.5 1.4 diacylglycerol kinase (ATP) compare
H281DRAFT_01214 +0.5 2.5 Predicted transcriptional regulator YheO, contains PAS and DNA-binding HTH domains compare
H281DRAFT_06041 +0.5 1.5 Tautomerase enzyme compare
H281DRAFT_01483 +0.5 1.1 hypothetical protein compare
H281DRAFT_03695 +0.5 1.8 glutathione S-transferase compare
H281DRAFT_06346 +0.5 0.9 Predicted deacylase compare
H281DRAFT_00291 +0.5 0.9 Cytochrome c553 compare
H281DRAFT_05645 +0.5 1.9 phospholipid transport system substrate-binding protein compare
H281DRAFT_05762 +0.5 1.9 flagellar basal-body rod protein FlgB compare
H281DRAFT_06506 +0.5 0.8 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_02818 +0.5 1.2 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
H281DRAFT_03027 +0.5 1.9 phosphonopyruvate decarboxylase compare
H281DRAFT_00441 +0.5 1.3 hypothetical protein compare
H281DRAFT_06070 +0.5 1.5 FimV C-terminal domain-containing protein compare
H281DRAFT_04875 +0.5 0.7 Nucleoside-diphosphate-sugar epimerase compare
H281DRAFT_01422 +0.5 1.8 hypothetical protein compare
H281DRAFT_05967 +0.5 0.8 Cupredoxin-like domain-containing protein compare
H281DRAFT_00043 +0.5 1.6 protein of unknown function (DUF3331) compare
H281DRAFT_00097 +0.5 1.1 Protein of unknown function (DUF2844) compare
H281DRAFT_04858 +0.5 0.7 hypothetical protein compare
H281DRAFT_03226 +0.5 0.7 mannose-binding protein /fructose-binding protein /ribose-binding protein compare


Specific Phenotypes

None in this experiment

For Paraburkholderia bryophila 376MFSha3.1 in carbon source experiments

For carbon source D-Glucose across organisms