Experiment set4IT087 for Pseudomonas fluorescens FW300-N2E3

Compare to:

LB with Ceftazidime hydrate 0.12 mg/ml

200 most important genes:

  gene name fitness t score description  
AO353_00530 -4.0 -12.0 lytic transglycosylase conserved
AO353_22685 -3.5 -5.2 peroxidase compare
AO353_17295 -3.3 -18.4 multidrug transporter compare
AO353_04565 -3.2 -4.4 nucleoid-associated protein compare
AO353_20185 -3.2 -5.3 DNA-binding protein compare
AO353_17300 -3.1 -8.1 antibiotic transporter compare
AO353_06415 -3.0 -4.0 hypothetical protein compare
AO353_10995 -2.8 -11.6 hypothetical protein conserved
AO353_15905 -2.7 -6.2 outer membrane protein assembly factor BamB compare
AO353_17290 -2.6 -6.8 multidrug transporter compare
AO353_15900 -2.5 -2.9 GTP-binding protein compare
AO353_02250 -2.4 -3.1 chorismate synthase compare
AO353_09915 -2.3 -9.1 long-chain acyl-CoA thioester hydrolase compare
AO353_00825 -2.3 -5.0 porin compare
AO353_07355 -2.3 -5.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_08350 -2.3 -8.0 hypothetical protein compare
AO353_09275 -2.3 -4.1 DNA-directed RNA polymerase subunit omega compare
AO353_05420 -2.2 -2.5 peptide chain release factor 3 compare
AO353_18630 -2.2 -9.6 beta-ketoacyl-ACP synthase compare
AO353_09240 -2.2 -2.9 acetylglutamate kinase compare
AO353_06040 -2.1 -5.1 exodeoxyribonuclease V subunit alpha compare
AO353_05225 -2.1 -14.4 hypothetical protein compare
AO353_06455 -2.1 -3.2 D-alanyl-D-alanine carboxypeptidase compare
AO353_25550 -2.1 -7.2 4-amino-4-deoxy-L-arabinose transferase compare
AO353_11750 -2.0 -2.6 ATPase compare
AO353_05690 -1.9 -3.9 SsrA-binding protein compare
AO353_10930 -1.9 -7.5 DNA polymerase I compare
AO353_00765 -1.8 -9.4 D-alanyl-D-alanine carboxypeptidase conserved
AO353_09040 -1.7 -2.4 diaminopimelate epimerase compare
AO353_27695 -1.7 -7.3 isocitrate dehydrogenase compare
AO353_12090 -1.6 -2.6 imidazole glycerol phosphate synthase subunit HisF compare
AO353_21425 -1.6 -4.0 hypothetical protein compare
AO353_09890 -1.5 -4.5 phosphate ABC transporter ATP-binding protein compare
AO353_17675 -1.5 -5.4 hypothetical protein compare
AO353_19020 -1.5 -2.7 hypothetical protein compare
AO353_16495 -1.5 -4.6 zinc metallopeptidase RseP compare
AO353_06550 -1.5 -7.4 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
AO353_18540 -1.5 -2.8 pseudouridine synthase compare
AO353_05625 -1.4 -2.2 transcription elongation factor GreA compare
AO353_04190 -1.4 -2.5 glycerol-3-phosphate dehydrogenase compare
AO353_06050 -1.4 -5.7 exodeoxyribonuclease V subunit gamma compare
AO353_12790 -1.4 -2.4 hypothetical protein compare
AO353_10725 -1.4 -1.5 dodecin flavoprotein compare
AO353_10055 -1.4 -9.1 DNA helicase II compare
AO353_23730 -1.4 -2.8 hypothetical protein compare
AO353_09320 -1.4 -7.5 ATP-dependent DNA helicase RecG compare
AO353_03615 -1.4 -3.0 cold-shock protein compare
AO353_12915 -1.4 -6.4 carbamoyltransferase compare
AO353_20175 -1.4 -3.2 ATP-dependent Clp protease proteolytic subunit compare
AO353_13100 -1.4 -1.8 GTPase RsgA compare
AO353_03670 -1.4 -4.4 ornithine acetyltransferase compare
AO353_05550 -1.3 -5.7 pseudouridine synthase compare
AO353_08685 -1.3 -6.4 N-acetylglutamate synthase compare
AO353_06045 -1.3 -5.8 exodeoxyribonuclease V subunit beta compare
AO353_00760 -1.3 -2.6 hypothetical protein compare
AO353_07155 -1.3 -5.1 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_27650 -1.2 -4.1 cell division protein FtsK compare
AO353_16940 -1.2 -4.9 deoxycytidine triphosphate deaminase compare
AO353_14475 -1.2 -9.8 penicillin-binding protein 1B compare
AO353_03580 -1.2 -3.0 ATP-dependent DNA helicase RuvB compare
AO353_28700 -1.2 -2.6 hypothetical protein compare
AO353_04355 -1.2 -1.9 homoserine dehydrogenase compare
AO353_12880 -1.2 -1.6 ADP-heptose--LPS heptosyltransferase compare
AO353_17035 -1.2 -4.2 hypothetical protein compare
AO353_00515 -1.2 -2.6 hypothetical protein compare
AO353_09560 -1.2 -1.8 type VI secretion protein compare
AO353_02685 -1.2 -3.2 phosphoribosylglycinamide formyltransferase compare
AO353_09000 -1.1 -4.1 argininosuccinate lyase compare
AO353_25450 -1.1 -2.5 cyanate hydratase compare
AO353_02660 -1.1 -3.9 peptidase P60 compare
AO353_08165 -1.1 -2.5 pyrroline-5-carboxylate reductase compare
AO353_06495 -1.1 -3.9 gamma-glutamyl phosphate reductase compare
AO353_08115 -1.1 -4.7 energy transducer TonB compare
AO353_28425 -1.1 -3.1 TetR family transcriptional regulator compare
AO353_20680 -1.1 -3.0 cell division protein compare
AO353_23945 -1.1 -2.5 hypothetical protein compare
AO353_23710 -1.1 -4.3 protein BatD compare
AO353_09250 -1.1 -2.6 exodeoxyribonuclease III compare
AO353_17645 -1.0 -6.6 peptidase M48 compare
AO353_12115 -1.0 -1.8 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_04520 -1.0 -4.0 elongation factor 4 compare
AO353_12105 -1.0 -4.5 peptidase S41 compare
AO353_11730 -1.0 -6.0 glutamate--cysteine ligase compare
AO353_13925 -1.0 -1.7 XRE family transcriptional regulator compare
AO353_25990 -1.0 -4.5 aspartyl beta-hydroxylase compare
AO353_16805 -1.0 -4.1 recombinase RecA compare
AO353_23950 -1.0 -2.0 hypothetical protein compare
AO353_18505 -1.0 -1.6 translation initiation factor 2 compare
AO353_09315 -1.0 -6.2 LysR family transcriptional regulator compare
AO353_27710 -1.0 -1.9 DNA repair protein compare
AO353_13225 -1.0 -2.3 50S ribosomal protein L9 compare
AO353_05125 -1.0 -2.9 BolA family transcriptional regulator compare
AO353_17880 -1.0 -3.9 hypothetical protein compare
AO353_12650 -1.0 -1.3 hypothetical protein compare
AO353_13040 -1.0 -5.0 esterase compare
AO353_03420 -1.0 -2.9 phosphogluconate dehydratase compare
AO353_00860 -1.0 -3.3 EstX protein compare
AO353_02190 -1.0 -6.4 hypothetical protein compare
AO353_20170 -0.9 -3.1 trigger factor compare
AO353_13640 -0.9 -2.9 histidine kinase compare
AO353_09905 -0.9 -5.4 phosphate-binding protein compare
AO353_20785 -0.9 -3.7 carbon storage regulator CsrA compare
AO353_12540 -0.9 -2.4 hypothetical protein compare
AO353_14495 -0.9 -6.0 acetolactate synthase 3 catalytic subunit compare
AO353_22615 -0.9 -2.7 hypothetical protein compare
AO353_25530 -0.9 -4.1 UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase compare
AO353_21430 -0.9 -2.5 hypothetical protein compare
AO353_07315 -0.9 -1.8 rRNA methyltransferase compare
AO353_03590 -0.9 -2.4 crossover junction endodeoxyribonuclease RuvC compare
AO353_07685 -0.9 -2.8 hypothetical protein compare
AO353_21625 -0.9 -1.7 Fe/S biogenesis protein NfuA compare
AO353_22475 -0.9 -2.6 alkaline phosphatase compare
AO353_27720 -0.9 -2.8 cupin compare
AO353_04490 -0.9 -5.3 murein transglycosylase compare
AO353_00495 -0.9 -1.6 DNA topoisomerase I compare
AO353_21445 -0.9 -2.5 cation:proton antiporter compare
AO353_04360 -0.9 -4.1 protein-disulfide isomerase compare
AO353_14040 -0.9 -3.6 chorismate mutase compare
AO353_02020 -0.9 -2.6 hypothetical protein compare
AO353_06320 -0.9 -2.8 AsnC family transcriptional regulator compare
AO353_14225 -0.9 -5.1 laccase compare
AO353_16040 -0.8 -1.9 hypothetical protein compare
AO353_06850 -0.8 -2.9 MFS transporter compare
AO353_10670 -0.8 -3.6 shikimate dehydrogenase compare
AO353_03545 -0.8 -4.1 hypothetical protein compare
AO353_16710 -0.8 -1.7 hypothetical protein compare
AO353_22800 -0.8 -2.0 sulfite reductase compare
AO353_25335 -0.8 -1.5 malonate decarboxylase acyl carrier protein compare
AO353_10950 -0.8 -5.2 thiol:disulfide interchange protein compare
AO353_21935 -0.8 -1.4 nitrite reductase compare
AO353_02075 -0.8 -5.5 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_12935 -0.8 -2.5 glycosyltransferase compare
AO353_12500 -0.8 -1.3 shikimate kinase compare
AO353_03595 -0.8 -2.0 hypothetical protein compare
AO353_19250 -0.8 -1.7 molybdenum cofactor guanylyltransferase compare
AO353_12460 -0.8 -4.2 malate dehydrogenase compare
AO353_02595 -0.8 -2.1 cobalamin synthase compare
AO353_16765 -0.8 -1.8 hypothetical protein compare
AO353_08980 -0.8 -2.1 heme biosynthesis operon protein HemX compare
AO353_16980 -0.8 -2.0 isochorismatase compare
AO353_03795 -0.8 -2.5 fumarate hydratase compare
AO353_27245 -0.8 -2.5 lysozyme compare
AO353_12110 -0.8 -4.3 peptidase M23 compare
AO353_19070 -0.8 -2.2 hypothetical protein compare
AO353_14090 -0.8 -3.8 alkylphosphonate utilization protein compare
AO353_04175 -0.8 -2.8 glycerol uptake facilitator GlpF compare
AO353_26390 -0.8 -1.9 glyoxalase compare
AO353_08110 -0.8 -3.2 glutathione synthetase compare
AO353_27950 -0.8 -1.6 hypothetical protein compare
AO353_03585 -0.7 -1.8 ATP-dependent DNA helicase RuvA compare
AO353_28055 -0.7 -1.9 hypothetical protein compare
AO353_09400 -0.7 -2.2 hypothetical protein compare
AO353_03715 -0.7 -0.9 H-NS histone compare
AO353_10890 -0.7 -3.3 methionine ABC transporter ATP-binding protein compare
AO353_05240 -0.7 -1.8 rod shape-determining protein MreD compare
AO353_05770 -0.7 -5.5 hypothetical protein compare
AO353_03275 -0.7 -1.6 LysR family transcriptional regulator compare
AO353_02235 -0.7 -2.8 acireductone dioxygenase compare
AO353_18170 -0.7 -3.8 aspartyl beta-hydroxylase compare
AO353_18945 -0.7 -2.7 hypothetical protein compare
AO353_16825 -0.7 -3.0 hypothetical protein compare
AO353_02070 -0.7 -3.1 prephenate dehydratase compare
AO353_15270 -0.7 -2.1 phospholipid-binding protein compare
AO353_22375 -0.7 -2.1 cytochrome c-550 PedF compare
AO353_20565 -0.7 -1.3 tRNA-Ala compare
AO353_25310 -0.7 -2.6 malonate carrier protein compare
AO353_02145 -0.7 -3.3 hypothetical protein compare
AO353_25220 -0.7 -2.2 hypothetical protein compare
AO353_13865 -0.7 -1.3 hypothetical protein compare
AO353_13245 -0.7 -4.1 hypothetical protein compare
AO353_23735 -0.7 -3.6 AAA family ATPase compare
AO353_21560 -0.7 -2.6 type VI secretion protein compare
AO353_00430 -0.7 -2.0 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_28625 -0.7 -3.5 hypothetical protein compare
AO353_08015 -0.7 -3.6 5,10-methylenetetrahydrofolate reductase compare
AO353_14120 -0.7 -2.5 hypothetical protein compare
AO353_01410 -0.7 -1.9 ribonuclease E compare
AO353_17050 -0.7 -3.3 hypothetical protein compare
AO353_23485 -0.7 -3.9 lytic transglycosylase compare
AO353_07075 -0.7 -2.8 elongation factor Tu compare
AO353_10445 -0.7 -1.2 tRNA uridine 5-carboxymethylaminomethyl modification protein compare
AO353_16195 -0.7 -1.3 DNA mismatch repair protein MutT compare
AO353_02515 -0.7 -3.4 recombination-associated protein RdgC compare
AO353_04105 -0.7 -3.8 argininosuccinate synthase compare
AO353_18135 -0.7 -0.9 hypothetical protein compare
AO353_14930 -0.7 -1.8 GntR family transcriptional regulator compare
AO353_00610 -0.7 -1.2 cytochrome C oxidase Cbb3 compare
AO353_28960 -0.7 -1.6 Fis family transcriptional regulator compare
AO353_24130 -0.7 -1.8 hypothetical protein compare
AO353_15285 -0.7 -4.5 hypothetical protein compare
AO353_14775 -0.6 -2.8 hypothetical protein compare
AO353_20245 -0.6 -2.1 LysR family transcriptional regulator compare
AO353_14500 -0.6 -2.8 acetolactate synthase 3 regulatory subunit compare
AO353_00885 -0.6 -2.0 3-methylitaconate isomerase compare
AO353_00720 -0.6 -3.5 chromosome segregation protein SMC compare
AO353_23405 -0.6 -1.3 hypothetical protein compare
AO353_15290 -0.6 -3.4 methyltransferase compare
AO353_00835 -0.6 -2.6 transporter compare
AO353_24810 -0.6 -2.3 transcriptional regulator compare
AO353_14085 -0.6 -1.8 hypothetical protein compare


Specific Phenotypes

For 4 genes in this experiment

For stress Ceftazidime hydrate in Pseudomonas fluorescens FW300-N2E3

For stress Ceftazidime hydrate across organisms