Experiment set4IT087 for Pseudomonas fluorescens FW300-N1B4

Compare to:

L-Valine nitrogen source

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_6 -4.0 -4.7 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf1N1B4_2548 -3.6 -6.4 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf1N1B4_1307 -3.6 -2.5 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_4477 -3.4 -3.2 Dihydrolipoamide dehydrogenase of branched-chain alpha-keto acid dehydrogenase (EC 1.8.1.4) compare
Pf1N1B4_1830 -3.4 -9.5 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf1N1B4_1831 -3.4 -9.8 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf1N1B4_1626 -3.4 -7.6 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf1N1B4_2547 -3.3 -2.3 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf1N1B4_1624 -3.3 -9.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf1N1B4_2880 -3.3 -12.9 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf1N1B4_1067 -3.2 -6.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf1N1B4_3697 -3.1 -10.0 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf1N1B4_15 -3.0 -4.0 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf1N1B4_2303 -3.0 -15.3 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf1N1B4_2545 -3.0 -12.7 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Pf1N1B4_1611 -3.0 -6.6 Nitrogen regulation protein NR(I) compare
Pf1N1B4_1627 -3.0 -4.4 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf1N1B4_2208 -3.0 -8.0 Polyphosphate kinase (EC 2.7.4.1) compare
Pf1N1B4_2384 -2.9 -12.2 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf1N1B4_1315 -2.8 -8.6 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Pf1N1B4_5665 -2.8 -5.1 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf1N1B4_2338 -2.8 -7.4 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_742 -2.7 -7.5 Argininosuccinate synthase (EC 6.3.4.5) compare
Pf1N1B4_4481 -2.7 -3.8 Transcriptional regulator BkdR of isoleucine and valine catabolism operon compare
Pf1N1B4_1408 -2.7 -4.4 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf1N1B4_58 -2.7 -5.8 Transaldolase (EC 2.2.1.2) compare
Pf1N1B4_2878 -2.7 -9.0 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf1N1B4_5224 -2.6 -4.0 tRNA-Arg-CCT compare
Pf1N1B4_2549 -2.6 -8.9 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf1N1B4_1565 -2.6 -5.0 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf1N1B4_2272 -2.6 -3.4 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf1N1B4_762 -2.5 -5.9 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf1N1B4_350 -2.5 -7.4 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Pf1N1B4_4758 -2.5 -4.4 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf1N1B4_12 -2.5 -6.8 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf1N1B4_2850 -2.5 -6.3 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf1N1B4_4476 -2.5 -3.8 Branched-chain amino acid aminotransferase (EC 2.6.1.42) compare
Pf1N1B4_2009 -2.5 -4.9 LysR family transcriptional regulator PA5437 compare
Pf1N1B4_3821 -2.4 -6.1 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Pf1N1B4_2858 -2.4 -9.8 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf1N1B4_1434 -2.4 -7.4 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_2112 -2.3 -14.3 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
Pf1N1B4_3506 -2.3 -7.3 Cysteine synthase B (EC 2.5.1.47) compare
Pf1N1B4_1906 -2.2 -4.1 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Pf1N1B4_2280 -2.2 -9.1 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf1N1B4_3081 -2.2 -17.6 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf1N1B4_4478 -2.2 -4.1 Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168) compare
Pf1N1B4_4480 -2.2 -3.6 Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4) compare
Pf1N1B4_2377 -2.2 -6.3 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Pf1N1B4_2282 -2.1 -9.0 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_2488 -2.1 -7.8 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf1N1B4_2337 -2.1 -5.3 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_847 -2.1 -8.9 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf1N1B4_1610 -2.1 -4.3 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf1N1B4_2010 -2.1 -6.3 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf1N1B4_4479 -2.1 -3.8 Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4) compare
Pf1N1B4_2489 -2.1 -6.4 Biotin synthesis protein BioH compare
Pf1N1B4_5666 -2.0 -3.8 Oxidoreductase probably involved in sulfite reduction compare
Pf1N1B4_1625 -2.0 -5.5 FIG00956267: hypothetical protein compare
Pf1N1B4_2487 -2.0 -8.1 Biotin synthase (EC 2.8.1.6) compare
Pf1N1B4_4065 -1.9 -6.9 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf1N1B4_2339 -1.8 -3.2 COG1872 compare
Pf1N1B4_2360 -1.8 -2.7 hypothetical protein compare
Pf1N1B4_345 -1.8 -2.5 Integration host factor beta subunit compare
Pf1N1B4_4678 -1.7 -4.5 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) compare
Pf1N1B4_652 -1.7 -8.9 Sensory box histidine kinase compare
Pf1N1B4_2011 -1.7 -7.0 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf1N1B4_3990 -1.7 -4.3 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf1N1B4_3819 -1.6 -3.9 Methylisocitrate lyase (EC 4.1.3.30) compare
Pf1N1B4_2490 -1.6 -5.6 Biotin synthesis protein BioC compare
Pf1N1B4_2859 -1.6 -11.1 Two-component sensor CbrA: intrcellular carbon:nitrogen balance compare
Pf1N1B4_5860 -1.6 -2.8 Two-component response regulator compare
Pf1N1B4_1668 -1.6 -5.2 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Pf1N1B4_3849 -1.5 -4.0 Transcriptional regulator, GntR family compare
Pf1N1B4_262 -1.5 -12.5 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf1N1B4_3833 -1.5 -6.6 Major porin and structural outer membrane porin OprF compare
Pf1N1B4_578 -1.5 -3.4 enoyl-CoA hydratase, R-specific compare
Pf1N1B4_909 -1.5 -3.1 Ketosteroid isomerase-related protein compare
Pf1N1B4_3812 -1.5 -7.1 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) compare
Pf1N1B4_2486 -1.4 -1.9 hypothetical protein compare
Pf1N1B4_2853 -1.4 -2.2 Pantoate--beta-alanine ligase (EC 6.3.2.1) compare
Pf1N1B4_2874 -1.4 -2.8 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf1N1B4_1566 -1.4 -5.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf1N1B4_2239 -1.4 -4.4 FIG00953395: hypothetical protein compare
Pf1N1B4_27 -1.4 -3.5 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf1N1B4_2380 -1.4 -9.6 Cytochrome B561 compare
Pf1N1B4_3290 -1.4 -1.8 Alternative cytochrome c oxidase polypeptide CoxP (EC 1.9.3.1) compare
Pf1N1B4_1153 -1.4 -3.4 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
Pf1N1B4_4299 -1.3 -2.8 sensor histidine kinase compare
Pf1N1B4_327 -1.3 -1.6 hypothetical protein compare
Pf1N1B4_1837 -1.3 -2.3 Osmotically inducible protein C compare
Pf1N1B4_1317 -1.3 -3.0 Sensor histidine kinase/response regulator compare
Pf1N1B4_2695 -1.3 -1.7 Rare lipoprotein A precursor compare
Pf1N1B4_5925 -1.2 -7.6 hypothetical protein compare
Pf1N1B4_3906 -1.2 -3.9 DNA topoisomerase I (EC 5.99.1.2) compare
Pf1N1B4_430 -1.2 -2.1 hypothetical protein compare
Pf1N1B4_5311 -1.2 -2.0 hypothetical protein compare
Pf1N1B4_2381 -1.2 -8.7 Protein yceI precursor compare
Pf1N1B4_1636 -1.2 -1.7 FIG00954739: hypothetical protein compare
Pf1N1B4_4531 -1.2 -1.7 FIG01221261: hypothetical protein compare
Pf1N1B4_4972 -1.2 -2.3 CELL PROCESSES; Adaptation; adaptations, atypical conditions compare
Pf1N1B4_5926 -1.2 -7.7 hypothetical protein compare
Pf1N1B4_5266 -1.2 -2.1 hypothetical protein compare
Pf1N1B4_591 -1.2 -4.1 Aldose 1-epimerase compare
Pf1N1B4_4790 -1.1 -4.3 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) (from data) compare
Pf1N1B4_2491 -1.1 -2.9 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf1N1B4_1391 -1.1 -4.2 Protein containing transglutaminase-like domain, putative cysteine protease compare
Pf1N1B4_339 -1.1 -2.1 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf1N1B4_1683 -1.1 -1.5 Alpha-ketoglutarate-dependent taurine dioxygenase (EC 1.14.11.17) compare
Pf1N1B4_5777 -1.1 -3.1 Nitrous oxide reductase maturation protein, outer-membrane lipoprotein NosL compare
Pf1N1B4_4979 -1.1 -2.6 Transcriptional regulator, AsnC family compare
Pf1N1B4_3889 -1.1 -1.9 hypothetical protein compare
Pf1N1B4_2008 -1.1 -6.1 Phosphogluconate repressor HexR, RpiR family compare
Pf1N1B4_1617 -1.1 -5.4 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) compare
Pf1N1B4_2493 -1.1 -2.3 Acyl-CoA dehydrogenase (EC 1.3.8.7) compare
Pf1N1B4_5453 -1.0 -2.4 hypothetical protein compare
Pf1N1B4_3703 -1.0 -2.4 NLP/P60 family protein compare
Pf1N1B4_898 -1.0 -5.3 Cytosol aminopeptidase PepA (EC 3.4.11.1) compare
Pf1N1B4_2240 -1.0 -2.8 Transcriptional regulator, AsnC family compare
Pf1N1B4_3980 -1.0 -2.6 Transcriptional regulator, HxlR family compare
Pf1N1B4_626 -1.0 -4.8 Quinolinate synthetase (EC 2.5.1.72) compare
Pf1N1B4_4253 -1.0 -1.6 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf1N1B4_1540 -1.0 -2.8 Type IV pilus biogenesis protein PilP compare
Pf1N1B4_1052 -1.0 -2.2 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) compare
Pf1N1B4_2526 -1.0 -7.7 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf1N1B4_5962 -1.0 -3.1 hypothetical protein compare
Pf1N1B4_2167 -1.0 -4.4 Ammonium transporter compare
Pf1N1B4_886 -1.0 -1.9 FIG137478: Hypothetical protein compare
Pf1N1B4_4968 -1.0 -3.3 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) compare
Pf1N1B4_74 -1.0 -2.0 hypothetical protein compare
Pf1N1B4_1 -1.0 -1.8 Colicin V production protein compare
Pf1N1B4_765 -1.0 -2.1 Cys-tRNA(Pro) deacylase YbaK compare
Pf1N1B4_5906 -1.0 -2.6 Esterase/lipase compare
Pf1N1B4_5023 -1.0 -2.8 Alkylated DNA repair protein AlkB compare
Pf1N1B4_4195 -1.0 -2.9 Transcriptional regulator, TetR family compare
Pf1N1B4_4506 -1.0 -1.6 Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10) compare
Pf1N1B4_1039 -0.9 -2.7 putative membrane protein compare
Pf1N1B4_3768 -0.9 -1.9 Homoserine/homoserine lactone efflux protein compare
Pf1N1B4_202 -0.9 -2.8 ABC transporter in pyoverdin gene cluster, permease component compare
Pf1N1B4_2147 -0.9 -3.1 Putrescine utilization regulator compare
Pf1N1B4_4614 -0.9 -2.8 Membrane alanine aminopeptidase N (EC 3.4.11.2) compare
Pf1N1B4_5498 -0.9 -1.6 hypothetical protein compare
Pf1N1B4_1504 -0.9 -1.7 Acyl carrier protein compare
Pf1N1B4_4824 -0.9 -1.7 Gamma-glutamyl-putrescine oxidase (EC1.4.3.-) compare
Pf1N1B4_3973 -0.9 -2.6 ABC-type spermidine/putrescine transport system, permease component I compare
Pf1N1B4_4540 -0.9 -1.9 Uncharacterized protein ImpJ/VasE compare
Pf1N1B4_5863 -0.9 -1.7 Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE compare
Pf1N1B4_4671 -0.9 -2.0 Short-chain dehydrogenase/reductase SDR compare
Pf1N1B4_1619 -0.9 -5.3 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf1N1B4_3484 -0.9 -3.3 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf1N1B4_5047 -0.9 -2.5 Integral membrane protein TerC compare
Pf1N1B4_4999 -0.9 -2.3 Sugar diacid utilization regulator SdaR compare
Pf1N1B4_3648 -0.8 -2.8 hypothetical protein compare
Pf1N1B4_2550 -0.8 -2.9 Lipoate-protein ligase A compare
Pf1N1B4_1300 -0.8 -2.3 hypothetical protein compare
Pf1N1B4_2431 -0.8 -2.5 L-proline glycine betaine binding ABC transporter protein ProX (TC 3.A.1.12.1) compare
Pf1N1B4_2005 -0.8 -1.4 ATP-dependent DNA helicase UvrD/PcrA compare
Pf1N1B4_255 -0.8 -3.0 Free methionine-(R)-sulfoxide reductase, contains GAF domain compare
Pf1N1B4_348 -0.8 -2.5 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf1N1B4_2210 -0.8 -1.7 Glutamate transport ATP-binding protein compare
Pf1N1B4_3279 -0.8 -1.8 putative membrane protein compare
Pf1N1B4_165 -0.8 -1.9 FIG00638667: hypothetical protein compare
Pf1N1B4_4992 -0.8 -2.6 Dienelactone hydrolase and related enzymes compare
Pf1N1B4_2854 -0.8 -2.5 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11) compare
Pf1N1B4_617 -0.8 -1.5 Carbamate kinase (EC 2.7.2.2) compare
Pf1N1B4_6042 -0.8 -2.3 Probable transmembrane protein compare
Pf1N1B4_1675 -0.8 -1.7 Transcriptional regulator compare
Pf1N1B4_5464 -0.8 -1.7 Cointegrate resolution protein T compare
Pf1N1B4_1891 -0.8 -1.9 ABC-type transport system involved in resistance to organic solvents, periplasmic component USSDB6C compare
Pf1N1B4_4112 -0.8 -3.3 hypothetical protein compare
Pf1N1B4_1230 -0.8 -3.2 Transcriptional regulator, LysR family compare
Pf1N1B4_175 -0.8 -1.5 sigma-54 dependent transcriptional regulator compare
Pf1N1B4_102 -0.8 -1.5 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Pf1N1B4_257 -0.8 -3.4 sensor histidine kinase/response regulator compare
Pf1N1B4_1126 -0.8 -2.0 Dipeptide transport ATP-binding protein DppD (TC 3.A.1.5.2) compare
Pf1N1B4_1914 -0.8 -3.2 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) compare
Pf1N1B4_4487 -0.8 -1.4 FIG00955631: hypothetical protein compare
Pf1N1B4_5371 -0.8 -1.4 hypothetical protein compare
Pf1N1B4_1579 -0.8 -2.7 Imidazolonepropionase (EC 3.5.2.7) (from data) compare
Pf1N1B4_678 -0.8 -4.0 Pyruvate kinase (EC 2.7.1.40) compare
Pf1N1B4_3783 -0.8 -1.9 FIG00958237: hypothetical protein compare
Pf1N1B4_5838 -0.8 -1.6 FIG00956589: hypothetical protein compare
Pf1N1B4_4372 -0.8 -1.3 Galactitol utilization operon repressor compare
Pf1N1B4_3546 -0.8 -1.4 P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein compare
Pf1N1B4_2917 -0.8 -4.0 FIG140336: TPR domain protein compare
Pf1N1B4_5620 -0.8 -1.6 Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1) compare
Pf1N1B4_6027 -0.8 -1.9 FIG00955358: hypothetical protein compare
Pf1N1B4_1294 -0.8 -1.4 VgrG protein compare
Pf1N1B4_4601 -0.8 -1.6 Streptothricin acetyltransferase, Streptomyces lavendulae type compare
Pf1N1B4_5147 -0.7 -1.3 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase compare
Pf1N1B4_479 -0.7 -1.8 Butyryl-CoA dehydrogenase (EC 1.3.99.2) compare
Pf1N1B4_275 -0.7 -1.0 Organic hydroperoxide resistance transcriptional regulator compare
Pf1N1B4_5014 -0.7 -1.4 Glutathione reductase (EC 1.8.1.7) compare
Pf1N1B4_267 -0.7 -1.5 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf1N1B4_4110 -0.7 -1.7 hypothetical protein compare
Pf1N1B4_344 -0.7 -1.9 hypothetical protein compare
Pf1N1B4_4734 -0.7 -2.0 Fap protein with C39 domain compare
Pf1N1B4_1264 -0.7 -3.2 Integral membrane efflux protein compare
Pf1N1B4_722 -0.7 -1.3 SAM-dependent methyltransferases compare
Pf1N1B4_3544 -0.7 -2.4 Nitroreductase family protein compare


Specific Phenotypes

For 1 genes in this experiment

For nitrogen source L-Valine in Pseudomonas fluorescens FW300-N1B4

For nitrogen source L-Valine across organisms