Experiment set4IT087 for Vibrio cholerae E7946 ATCC 55056

Compare to:

ICP3_phage_0.41_MOI_rep2

200 most important genes:

  gene name fitness t score description  
CSW01_18525 -4.9 -1.9 integrase compare
CSW01_00025 -4.7 -1.1 membrane protein insertion efficiency factor YidD compare
CSW01_10255 -4.6 -2.1 cytochrome c-type biogenesis protein CcmH compare
CSW01_13305 -4.3 -2.4 shikimate kinase compare
CSW01_18635 -4.3 -5.9 phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating) compare
CSW01_11555 -4.3 -3.0 riboflavin synthase compare
CSW01_01485 -4.2 -2.9 transcriptional regulator compare
CSW01_11560 -4.0 -2.8 riboflavin biosynthesis protein RibD compare
CSW01_13285 -4.0 -2.8 ribulose-phosphate 3-epimerase compare
CSW01_12365 -4.0 -2.8 inorganic phosphate transporter compare
CSW01_03410 -3.9 -2.3 polyribonucleotide nucleotidyltransferase compare
CSW01_00450 -3.8 -2.4 SCP2 domain-containing protein compare
CSW01_14055 -3.7 -2.5 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
CSW01_04820 -3.7 -11.9 serine hydroxymethyltransferase compare
CSW01_14910 -3.6 -1.2 cold-shock protein compare
CSW01_12005 -3.5 -4.2 aerobic respiration two-component sensor histidine kinase ArcB compare
CSW01_11670 -3.5 -2.1 NADH:ubiquinone reductase (Na(+)-transporting) subunit B compare
CSW01_11730 -3.4 -3.6 2-dehydropantoate 2-reductase compare
CSW01_06380 -3.4 -2.3 GTP cyclohydrolase II compare
CSW01_18350 -3.4 -2.0 cell division protein DedD compare
CSW01_06920 -3.3 -2.2 DUF2760 domain-containing protein compare
CSW01_00560 -3.2 -6.1 DNA polymerase I compare
CSW01_00015 -3.2 -4.3 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
CSW01_02755 -3.1 -2.7 glutamyl-tRNA amidotransferase compare
CSW01_03210 -3.1 -14.4 iron ABC transporter permease compare
CSW01_08705 -3.0 -4.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
CSW01_10170 -3.0 -1.9 MarC family protein compare
CSW01_03205 -2.9 -10.8 iron ABC transporter substrate-binding protein compare
CSW01_03215 -2.9 -11.5 ABC transporter ATP-binding protein compare
CSW01_05575 -2.8 -3.8 phosphate acetyltransferase compare
CSW01_02020 -2.8 -2.8 phosphoadenosine phosphosulfate reductase compare
CSW01_03980 -2.7 -9.0 IMP dehydrogenase compare
CSW01_11780 -2.7 -4.1 exodeoxyribonuclease V subunit beta compare
CSW01_05275 -2.7 -1.2 hypothetical protein compare
CSW01_10035 -2.6 -1.3 YnhF family membrane protein compare
CSW01_02490 -2.6 -9.4 glutathione synthetase compare
CSW01_13805 -2.5 -6.1 Hsp33 family molecular chaperone HslO compare
CSW01_18835 -2.4 -3.1 acyl-CoA thioesterase compare
CSW01_01125 -2.4 -7.9 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase compare
CSW01_02875 -2.4 -6.3 DNA recombination/repair protein RecA compare
CSW01_08935 -2.3 -1.9 N-acetylmannosamine-6-phosphate 2-epimerase compare
CSW01_09525 -2.3 -2.0 DNA translocase FtsK compare
CSW01_01875 -2.3 -2.9 hypothetical protein compare
CSW01_12320 -2.3 -3.9 3',5'-cyclic-AMP phosphodiesterase compare
CSW01_16325 -2.3 -1.1 hypothetical protein compare
CSW01_12885 -2.3 -7.0 fructose 1,6-bisphosphatase compare
CSW01_05580 -2.2 -6.9 acetate kinase compare
CSW01_02970 -2.2 -10.0 glutamate--cysteine ligase compare
CSW01_10260 -2.2 -3.1 thiol:disulfide interchange protein DsbE compare
CSW01_10875 -2.2 -6.6 redox-regulated ATPase YchF compare
CSW01_13635 -2.2 -9.7 thiol:disulfide interchange protein DsbD compare
CSW01_10270 -2.0 -2.9 cytochrome c-type biogenesis protein CcmE compare
CSW01_10265 -2.0 -4.9 c-type cytochrome biogenesis protein CcmF compare
CSW01_00500 -2.0 -11.3 glycerol-3-phosphate 1-O-acyltransferase compare
CSW01_06325 -1.9 -1.2 hypothetical protein compare
CSW01_02450 -1.9 -7.1 pyrroline-5-carboxylate reductase compare
CSW01_00470 -1.9 -3.5 twin-arginine translocase subunit TatC compare
CSW01_00095 -1.9 -2.6 hypothetical protein compare
CSW01_13420 -1.9 -2.9 elongation factor P--(R)-beta-lysine ligase compare
CSW01_03325 -1.9 -3.5 porin compare
CSW01_12680 -1.9 -5.8 cytosol aminopeptidase compare
CSW01_09035 -1.9 -3.9 IclR family transcriptional regulator compare
CSW01_03880 -1.9 -1.4 HTH-type transcriptional regulator IscR compare
CSW01_03695 -1.8 -5.9 ribosomal large subunit pseudouridine synthase D compare
CSW01_19435 -1.8 -1.6 hypothetical protein compare
CSW01_10340 -1.8 -3.3 MinD/ParA family protein compare
CSW01_05730 -1.8 -9.9 inosine/guanosine kinase compare
CSW01_11920 -1.8 -6.1 NupC/NupG family nucleoside CNT transporter compare
CSW01_14625 -1.8 -1.5 hypothetical protein compare
CSW01_13810 -1.7 -6.6 phosphoenolpyruvate carboxykinase (ATP) compare
CSW01_17885 -1.7 -1.9 hypothetical protein compare
CSW01_11215 -1.7 -3.7 flagellar hook assembly protein FlgD compare
CSW01_04285 -1.7 -1.4 toxin coregulated pilus biosynthesis protein R compare
CSW01_10290 -1.7 -3.6 cytochrome c biogenesis ATP-binding export protein CcmA compare
CSW01_09625 -1.7 -2.0 hypothetical protein compare
CSW01_14540 -1.7 -2.8 hypothetical protein compare
CSW01_18310 -1.7 -1.1 hypothetical protein compare
CSW01_17495 -1.7 -5.3 glycerol-3-phosphate dehydrogenase compare
CSW01_05065 -1.6 -4.0 N-acetylglucosamine repressor compare
CSW01_17325 -1.6 -5.3 transaldolase compare
CSW01_11785 -1.6 -2.8 exonuclease V subunit gamma compare
CSW01_08730 -1.5 -1.8 phage-shock protein compare
CSW01_10285 -1.5 -2.0 heme exporter protein CcmB compare
CSW01_06810 -1.5 -0.9 hypothetical protein compare
CSW01_07085 -1.5 -5.0 carboxypeptidase M32 compare
CSW01_03070 -1.5 -2.7 hemolysin compare
CSW01_15705 -1.5 -1.8 DUF3265 domain-containing protein compare
CSW01_03785 -1.4 -3.4 phosphate ABC transporter permease compare
CSW01_08625 -1.4 -3.7 chromosome partition protein MukE compare
CSW01_00460 -1.4 -3.6 twin-arginine translocase subunit TatA compare
CSW01_01860 -1.4 -1.3 SlyX protein compare
CSW01_07435 -1.4 -1.1 hypothetical protein compare
CSW01_07175 -1.4 -3.9 DUF2987 domain-containing protein compare
CSW01_01820 -1.4 -4.1 N-acetylmuramoyl-L-alanine amidase compare
CSW01_07060 -1.4 -2.2 TetR/AcrR family transcriptional regulator compare
CSW01_11195 -1.4 -2.5 flagellar L-ring protein compare
CSW01_17275 -1.4 -0.7 large conductance mechanosensitive channel protein MscL compare
CSW01_11125 -1.4 -2.6 hypothetical protein compare
CSW01_09720 -1.4 -1.7 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
CSW01_13445 -1.4 -1.9 elongation factor P compare
CSW01_00065 -1.3 -5.8 DNA replication and repair protein RecF compare
CSW01_12255 -1.3 -2.8 flavodoxin FldB compare
CSW01_16990 -1.3 -1.1 hypothetical protein compare
CSW01_09465 -1.3 -3.6 NAD(P)/FAD-dependent oxidoreductase compare
CSW01_09420 -1.3 -1.4 DUF2062 domain-containing protein compare
CSW01_11225 -1.3 -4.4 flagellar basal body rod protein FlgB compare
CSW01_15865 -1.3 -1.7 DUF3465 domain-containing protein compare
CSW01_12465 -1.3 -3.4 elongation factor 4 compare
CSW01_14680 -1.3 -0.7 aminotransferase compare
CSW01_05310 -1.2 -2.3 DUF3379 domain-containing protein compare
CSW01_08985 -1.2 -0.9 6-phospho-beta-glucosidase compare
CSW01_09250 -1.2 -1.6 crossover junction endodeoxyribonuclease RuvC compare
CSW01_12735 -1.2 -3.9 RidA family protein compare
CSW01_18150 -1.2 -0.7 transcription initiation factor TFIIIB compare
CSW01_00650 -1.2 -4.7 tyrosine recombinase XerC compare
CSW01_16895 -1.2 -2.2 DNA-binding response regulator compare
CSW01_16835 -1.2 -2.7 catabolite repressor/activator compare
CSW01_04260 -1.2 -2.2 pilus assembly protein compare
CSW01_19555 -1.2 -1.5 response regulator compare
CSW01_05490 -1.2 -3.2 L-threonylcarbamoyladenylate synthase compare
CSW01_07195 -1.2 -1.8 cytochrome biogenesis protein compare
CSW01_13450 -1.2 -1.9 EF-P beta-lysylation protein EpmB compare
CSW01_06585 -1.2 -1.6 fumarate hydratase compare
CSW01_10615 -1.1 -2.8 flagellar basal body-associated protein FliL compare
CSW01_11220 -1.1 -1.9 flagellar basal body rod protein FlgC compare
CSW01_13675 -1.1 -2.9 bifunctional GTP diphosphokinase/guanosine-3',5'-bis(diphosphate) 3'-diphosphatase compare
CSW01_16195 -1.1 -0.7 DUF645 domain-containing protein compare
CSW01_08055 -1.1 -2.8 amino acid ABC transporter substrate-binding protein compare
CSW01_10630 -1.1 -1.5 flagella biosynthesis chaperone FliJ compare
CSW01_17835 -1.1 -1.3 hypothetical protein compare
CSW01_15660 -1.1 -1.3 cell shape-determining protein MreC compare
CSW01_12250 -1.1 -3.9 site-specific tyrosine recombinase XerD compare
CSW01_10440 -1.1 -2.0 succinate dehydrogenase flavoprotein subunit compare
CSW01_05800 -1.1 -1.5 ATP-dependent Clp protease adaptor ClpS compare
CSW01_07915 -1.1 -1.9 glycine--lipid A transferase AlmG compare
CSW01_14080 -1.1 -0.7 DUF3283 domain-containing protein compare
CSW01_10445 -1.1 -0.9 succinate dehydrogenase, hydrophobic membrane anchor protein compare
CSW01_05315 -1.1 -2.9 RNA polymerase subunit sigma compare
CSW01_18010 -1.1 -1.4 cytochrome C554 compare
CSW01_00615 -1.1 -0.8 hypothetical protein compare
CSW01_11745 -1.1 -1.6 cysteine desulfurase sulfur acceptor subunit CsdE compare
CSW01_08660 -1.1 -3.1 PurR family transcriptional regulator compare
CSW01_01965 -1.1 -1.6 glucose-6-phosphate isomerase compare
CSW01_13650 -1.1 -1.9 DUF4212 domain-containing protein compare
CSW01_07770 -1.1 -2.9 MotA/TolQ/ExbB proton channel family protein compare
CSW01_07145 -1.1 -1.3 spermidine/putrescine ABC transporter substrate-binding protein compare
CSW01_09220 -1.1 -0.9 cyd operon protein YbgE compare
CSW01_02530 -1.1 -3.4 D-erythrose-4-phosphate dehydrogenase compare
CSW01_07210 -1.1 -1.7 hypothetical protein compare
CSW01_11880 -1.1 -1.0 hypothetical protein compare
CSW01_12130 -1.0 -0.9 DUF721 domain-containing protein compare
CSW01_10600 -1.0 -1.3 flagellar biosynthetic protein FliO compare
CSW01_18680 -1.0 -2.5 heme utilization protein HutZ compare
CSW01_05660 -1.0 -2.9 dethiobiotin synthase compare
CSW01_14085 -1.0 -2.2 transcriptional regulator compare
CSW01_12880 -1.0 -1.7 hypothetical protein compare
CSW01_04210 -1.0 -1.7 hypothetical protein compare
CSW01_09440 -1.0 -1.9 PilZ domain-containing protein compare
CSW01_02455 -1.0 -3.2 YggS family pyridoxal phosphate enzyme compare
CSW01_00170 -1.0 -2.8 thiol:disulfide interchange protein DsbA compare
CSW01_16630 -1.0 -1.0 DUF645 domain-containing protein compare
CSW01_06400 -1.0 -3.1 DUF1513 domain-containing protein compare
CSW01_15845 -1.0 -2.2 DUF3265 domain-containing protein compare
CSW01_01915 -0.9 -2.5 bacterioferritin-associated ferredoxin compare
CSW01_08620 -0.9 -4.8 chromosome partition protein MukB compare
CSW01_06485 -0.9 -1.8 PTS lactose/cellobiose transporter subunit IIA compare
CSW01_16270 -0.9 -1.1 DUF3709 domain-containing protein compare
CSW01_04990 -0.9 -1.6 hypothetical protein compare
CSW01_11325 -0.9 -1.2 DUF3149 domain-containing protein compare
CSW01_07755 -0.9 -2.2 hypothetical protein compare
CSW01_14245 -0.9 -2.1 hypothetical protein compare
CSW01_03100 -0.9 -2.2 TetR/AcrR family transcriptional regulator compare
CSW01_15030 -0.9 -1.6 hypothetical protein compare
CSW01_18830 -0.9 -2.6 DeoR/GlpR family transcriptional regulator compare
CSW01_10020 -0.9 -4.3 ROK family protein compare
CSW01_01555 -0.9 -4.6 ATP-dependent RNA helicase RhlB compare
CSW01_15150 -0.9 -1.0 hypothetical protein compare
CSW01_01855 -0.9 -1.1 DUF2065 domain-containing protein compare
CSW01_07905 -0.9 -2.4 DUF2127 domain-containing protein compare
CSW01_13165 -0.9 -4.5 sel1 repeat family protein compare
CSW01_11535 -0.9 -2.2 thiamine-phosphate kinase compare
CSW01_08355 -0.9 -1.3 heat-shock protein HslJ compare
CSW01_03065 -0.9 -1.0 ClpXP protease specificity-enhancing factor compare
CSW01_10280 -0.9 -2.1 heme exporter protein C compare
CSW01_15535 -0.9 -1.4 NUDIX hydrolase compare
CSW01_16730 -0.9 -2.5 glutathione S-transferase compare
CSW01_18000 -0.9 -1.8 NUDIX hydrolase compare
CSW01_10420 -0.9 -3.1 succinyl-CoA ligase subunit beta compare
CSW01_10605 -0.9 -1.2 flagellar motor switch protein FliN compare
CSW01_11265 -0.9 -3.1 flagellar basal-body protein compare
CSW01_01920 -0.9 -0.8 bacterioferritin compare
CSW01_06015 -0.9 -3.0 NAD-dependent malic enzyme compare
CSW01_03760 -0.9 -2.4 phosphate regulon transcriptional regulatory protein PhoB compare
CSW01_07355 -0.8 -2.3 DNA-binding protein compare
CSW01_06385 -0.8 -3.3 peptidase compare
CSW01_04900 -0.8 -2.3 magnesium and cobalt efflux protein CorC compare
CSW01_05425 -0.8 -3.3 hypothetical protein compare
CSW01_11915 -0.8 -1.6 hypothetical protein compare
CSW01_07675 -0.8 -0.7 amino acid ABC transporter compare
CSW01_17745 -0.8 -1.2 diacylglycerol kinase compare


Specific Phenotypes

None in this experiment

For Vibrio cholerae E7946 ATCC 55056 in phage experiments

For phage ICP3_phage across organisms