Experiment set4IT087 for Vibrio cholerae E7946 ATCC 55056

Compare to:

ICP3_phage_0.41_MOI_rep2

200 most detrimental genes:

  gene name fitness t score description  
CSW01_01275 +5.1 48.9 phosphomannomutase/phosphoglucomutase compare
CSW01_01325 +5.1 17.9 acetyltransferase compare
CSW01_01280 +5.0 47.8 GDP-mannose 4,6-dehydratase compare
CSW01_01285 +5.0 43.5 perosamine synthetase compare
CSW01_01315 +5.0 39.9 NAD-dependent alcohol dehydrogenase compare
CSW01_01320 +4.9 44.0 acyl-CoA reductase compare
CSW01_01290 +4.9 43.0 rfbG protein compare
CSW01_01345 +4.9 44.8 glycosyl transferase family 1 compare
CSW01_01310 +4.9 46.6 long-chain fatty acid--CoA ligase compare
CSW01_01360 +4.8 31.3 sugar transferase compare
CSW01_01250 +4.8 44.7 polymerase compare
CSW01_01305 +4.7 24.5 acyl carrier protein compare
CSW01_01295 +4.6 20.3 ABC transporter permease compare
CSW01_01350 +4.5 42.5 polysaccharide biosynthesis protein compare
CSW01_01300 +4.5 23.8 sugar ABC transporter compare
CSW01_01185 +4.2 35.3 ADP-heptose--LPS heptosyltransferase compare
CSW01_01270 +4.1 17.6 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
CSW01_01260 +4.1 27.9 polysaccharide deacetylase compare
CSW01_09145 +3.6 18.7 PTS fructose transporter subunit IIA compare
CSW01_01245 +3.4 15.7 lipopolysaccharide heptosyltransferase II compare
CSW01_01265 +2.8 11.2 ADP-L-glycero-D-mannoheptose-6-epimerase compare
CSW01_01190 +2.7 17.2 glycosyltransferase family 2 protein compare
CSW01_01195 +2.5 12.6 ADP-heptose--LPS heptosyltransferase I compare
CSW01_01390 +2.4 20.1 mannose-6-phosphate isomerase, class I compare
CSW01_08465 +2.4 8.4 ABC transporter ATP-binding protein compare
CSW01_12340 +2.1 4.5 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase compare
CSW01_03815 +2.1 6.4 peroxidase compare
CSW01_04650 +2.1 3.4 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
CSW01_06025 +1.9 12.0 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
CSW01_18285 +1.8 3.6 4a-hydroxytetrahydrobiopterin dehydratase compare
CSW01_04935 +1.8 2.9 phosphocarrier protein HPr compare
CSW01_08450 +1.7 4.6 antimicrobial peptide ABC transporter permease SapB compare
CSW01_08445 +1.7 6.6 ABC transporter substrate-binding protein compare
CSW01_01255 +1.5 4.7 acyltransferase compare
CSW01_01830 +1.5 4.7 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
CSW01_13220 +1.4 2.0 hypothetical protein compare
CSW01_19395 +1.4 1.6 histidine kinase compare
CSW01_19095 +1.3 4.1 DUF445 domain-containing protein compare
CSW01_01710 +1.3 3.3 Rsd/AlgQ family anti-sigma factor compare
CSW01_12515 +1.3 1.7 DUF1107 domain-containing protein compare
CSW01_08955 +1.3 2.6 transcriptional regulator compare
CSW01_04570 +1.2 4.9 exodeoxyribonuclease 7 small subunit compare
CSW01_15000 +1.1 2.0 rfbP protein compare
CSW01_00620 +1.1 5.1 class I adenylate cyclase compare
CSW01_05380 +1.1 2.0 YkgJ family cysteine cluster protein compare
CSW01_01425 +1.1 1.2 phosphoribosylamine--glycine ligase compare
CSW01_00900 +1.1 1.8 hypothetical protein compare
CSW01_03155 +1.1 3.7 RNA polymerase-binding transcription factor DksA compare
CSW01_00215 +1.1 5.9 potassium uptake protein TrkH compare
CSW01_18205 +1.1 3.3 dehydratase compare
CSW01_07835 +1.0 5.4 catalase-peroxidase compare
CSW01_11275 +1.0 4.5 NADPH-dependent ferric siderophore reductase compare
CSW01_10135 +1.0 2.0 hypothetical protein compare
CSW01_06925 +1.0 1.8 hypothetical protein compare
CSW01_06075 +1.0 3.9 DUF3581 domain-containing protein compare
CSW01_03470 +1.0 6.1 peptide chain release factor 3 compare
CSW01_15730 +1.0 1.1 VOC family protein compare
CSW01_02835 +1.0 4.9 RNA polymerase sigma factor RpoS compare
CSW01_00540 +1.0 1.1 hypothetical protein compare
CSW01_10235 +1.0 2.2 hypothetical protein compare
CSW01_05180 +1.0 1.4 tRNA-Asn compare
CSW01_10155 +1.0 0.8 C4-dicarboxylate ABC transporter compare
CSW01_18280 +1.0 3.1 L-2,4-diaminobutyric acid acetyltransferase compare
CSW01_01420 +0.9 6.0 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase compare
CSW01_02255 +0.9 3.9 C4-dicarboxylate ABC transporter substrate-binding protein compare
CSW01_10355 +0.9 3.5 phosphohistidine phosphatase SixA compare
CSW01_15310 +0.9 1.9 exoribonuclease R compare
CSW01_16920 +0.9 2.5 hypothetical protein compare
CSW01_06255 +0.9 2.5 hypothetical protein compare
CSW01_05125 +0.9 1.3 ribonuclease T compare
CSW01_11710 +0.9 2.8 transcriptional regulator compare
CSW01_15955 +0.9 1.9 DUF3709 domain-containing protein compare
CSW01_16320 +0.9 2.2 VOC family protein compare
CSW01_16210 +0.9 1.4 VOC family protein compare
CSW01_12755 +0.9 1.4 anti-sigma B factor antagonist compare
CSW01_08685 +0.8 3.0 glycogen synthase compare
CSW01_11580 +0.8 2.6 sigma factor-binding protein Crl compare
CSW01_16290 +0.8 0.9 DUF1289 domain-containing protein compare
CSW01_03095 +0.8 1.8 hypothetical protein compare
CSW01_04020 +0.8 4.8 vibriobactin biosynthesis amide synthase VibH compare
CSW01_15870 +0.8 1.2 type II toxin-antitoxin system RelE/ParE family toxin compare
CSW01_15990 +0.8 2.1 hypothetical protein compare
CSW01_02440 +0.8 1.8 YggU family protein compare
CSW01_08175 +0.8 1.8 hypothetical protein compare
CSW01_06990 +0.8 2.7 QacE family quaternary ammonium compound efflux SMR transporter compare
CSW01_13950 +0.8 1.3 hypothetical protein compare
CSW01_19545 +0.8 2.8 chemotaxis protein CheW compare
CSW01_07750 +0.8 0.7 hypothetical protein compare
CSW01_18560 +0.8 0.8 hypothetical protein compare
CSW01_07875 +0.7 1.6 cytochrome BD ubiquinol oxidase subunit II compare
CSW01_03585 +0.7 2.0 peptidylprolyl isomerase compare
CSW01_10815 +0.7 2.3 Cys-tRNA(Pro) deacylase compare
CSW01_18805 +0.7 3.0 hypothetical protein compare
CSW01_18420 +0.7 1.5 hypothetical protein compare
CSW01_13500 +0.7 1.7 ribonuclease E activity regulator RraA compare
CSW01_02390 +0.7 1.2 tRNA-Thr compare
CSW01_15920 +0.7 1.6 DUF3265 domain-containing protein compare
CSW01_12950 +0.7 2.7 adenylyl-sulfate kinase compare
CSW01_09515 +0.7 3.4 Na+/H+ antiporter NhaB compare
CSW01_09990 +0.7 1.0 hypothetical protein compare
CSW01_07300 +0.7 1.6 lipoate--protein ligase compare
CSW01_17850 +0.7 2.0 flagellar brake protein compare
CSW01_17830 +0.7 0.8 hypothetical protein compare
CSW01_07810 +0.7 1.4 glycerophosphoryl diester phosphodiesterase compare
CSW01_17515 +0.7 1.5 beta-phosphoglucomutase family hydrolase compare
CSW01_01725 +0.7 1.4 TetR family transcriptional regulator compare
CSW01_13525 +0.7 3.8 DNA-binding transcriptional regulator CytR compare
CSW01_08610 +0.7 1.7 LysE family translocator compare
CSW01_05250 +0.7 3.6 zinc/cadmium/mercury/lead-transporting ATPase compare
CSW01_14815 +0.7 1.1 hypothetical protein compare
CSW01_14050 +0.7 2.9 ribosomal RNA small subunit methyltransferase G compare
CSW01_04940 +0.7 0.4 hypothetical protein compare
CSW01_05280 +0.7 3.3 uridine kinase compare
CSW01_09320 +0.7 1.9 amino acid ABC transporter permease compare
CSW01_13700 +0.7 2.4 transcription elongation factor GreB compare
CSW01_02940 +0.6 2.1 oxaloacetate decarboxylase subunit gamma compare
CSW01_04865 +0.6 1.0 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
CSW01_02860 +0.6 2.1 sulfate ABC transporter permease subunit CysW compare
CSW01_09495 +0.6 1.2 histidine triad nucleotide-binding protein compare
CSW01_04510 +0.6 1.8 50S ribosomal protein L31 type B compare
CSW01_16460 +0.6 0.7 acetyltransferase compare
CSW01_08195 +0.6 1.3 ABC transporter ATP-binding protein compare
CSW01_16705 +0.6 1.2 hypothetical protein compare
CSW01_08070 +0.6 0.7 hypothetical protein compare
CSW01_02865 +0.6 3.1 sulfate/thiosulfate import ATP-binding protein CysA compare
CSW01_12940 +0.6 1.3 DUF3299 domain-containing protein compare
CSW01_07020 +0.6 2.5 Chemotaxis protein methyltransferase 2 compare
CSW01_16470 +0.6 1.3 DUF645 domain-containing protein compare
CSW01_14340 +0.6 2.5 S9 family peptidase compare
CSW01_02830 +0.6 1.9 murein hydrolase activator NlpD compare
CSW01_12330 +0.6 2.3 ADP-ribose diphosphatase compare
CSW01_17115 +0.6 1.8 SgrR family transcriptional regulator compare
CSW01_06780 +0.6 3.3 homogentisate 1,2-dioxygenase compare
CSW01_01405 +0.6 1.1 DNA-binding protein HU-alpha compare
CSW01_06455 +0.6 1.9 DNA-binding response regulator compare
CSW01_10390 +0.6 1.3 ferrous iron transport protein A compare
CSW01_10325 +0.6 2.0 protein phosphatase CheZ compare
CSW01_07190 +0.6 1.6 transcriptional regulator FNR compare
CSW01_10725 +0.6 2.5 hypothetical protein compare
CSW01_15420 +0.6 2.5 glyoxalase compare
CSW01_06310 +0.6 1.7 transcriptional regulator compare
CSW01_10470 +0.6 2.7 phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) compare
CSW01_05685 +0.6 2.8 FAD-dependent oxidoreductase compare
CSW01_18590 +0.6 1.6 LysR family transcriptional regulator compare
CSW01_02505 +0.6 2.9 SprT family protein compare
CSW01_19375 +0.6 3.0 NAD(P)-dependent oxidoreductase compare
CSW01_15430 +0.6 1.0 hypothetical protein compare
CSW01_19250 +0.6 0.6 hypothetical protein compare
CSW01_19125 +0.6 1.0 branched-chain amino acid ABC transporter compare
CSW01_14125 +0.6 1.6 1,4-alpha-glucan branching enzyme compare
CSW01_06205 +0.6 1.6 thiopurine S-methyltransferase compare
CSW01_10500 +0.6 1.3 CidA/LrgA family protein compare
CSW01_17065 +0.6 1.7 conjugal transfer protein TraF compare
CSW01_16805 +0.6 1.9 anaerobic ribonucleoside-triphosphate reductase activating protein compare
CSW01_07965 +0.6 1.8 LysR family transcriptional regulator compare
CSW01_11115 +0.6 0.7 hypothetical protein compare
CSW01_06725 +0.6 1.6 tripartite tricarboxylate transporter substrate-binding protein compare
CSW01_11960 +0.6 2.0 autonomous glycyl radical cofactor GrcA compare
CSW01_19355 +0.6 1.5 rhodanese-like domain-containing protein compare
CSW01_09685 +0.5 2.1 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
CSW01_18895 +0.5 1.5 chemotaxis protein CheV compare
CSW01_10380 +0.5 1.1 iron transporter FeoC compare
CSW01_09965 +0.5 2.1 DUF2989 domain-containing protein compare
CSW01_00945 +0.5 2.2 XRE family transcriptional regulator compare
CSW01_07805 +0.5 2.2 DeoR/GlpR transcriptional regulator compare
CSW01_00710 +0.5 1.0 DUF4145 domain-containing protein compare
CSW01_14835 +0.5 0.9 SIMPL domain-containing protein compare
CSW01_17340 +0.5 1.7 23S rRNA methyltransferase compare
CSW01_10715 +0.5 1.3 DUF2919 domain-containing protein compare
CSW01_11350 +0.5 2.3 phosphoribosylformylglycinamidine cyclo-ligase compare
CSW01_17655 +0.5 1.8 protein translocase subunit SecF compare
CSW01_09605 +0.5 2.0 endopeptidase La compare
CSW01_15860 +0.5 0.5 DUF645 domain-containing protein compare
CSW01_04915 +0.5 2.4 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB compare
CSW01_14280 +0.5 1.0 DUF3302 domain-containing protein compare
CSW01_05270 +0.5 2.2 iron-sulfur cluster carrier protein ApbC compare
CSW01_06805 +0.5 1.1 peroxiredoxin compare
CSW01_18815 +0.5 2.1 AraC family transcriptional regulator compare
CSW01_07050 +0.5 2.5 hypothetical protein compare
CSW01_09820 +0.5 2.6 MFS transporter compare
CSW01_04045 +0.5 2.9 vibriobactin biosynthesis 4'-phosphopantetheinyl transferase VibD compare
CSW01_02015 +0.5 1.9 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
CSW01_16590 +0.5 0.5 N-acetyltransferase compare
CSW01_18475 +0.5 1.8 D-alanyl-D-alanine endopeptidase compare
CSW01_12920 +0.5 1.0 DUF2607 domain-containing protein compare
CSW01_18760 +0.5 2.8 dihydroorotase compare
CSW01_08260 +0.5 1.0 hypothetical protein compare
CSW01_19385 +0.5 1.0 tRNA (pseudouridine(54)-N(1))-methyltransferase TrmY compare
CSW01_16980 +0.5 1.2 hypothetical protein compare
CSW01_03975 +0.5 1.9 exodeoxyribonuclease VII large subunit compare
CSW01_07485 +0.5 1.3 cell division protein ZapC compare
CSW01_04390 +0.5 0.9 outer membrane protein assembly factor BamE compare
CSW01_17385 +0.5 1.1 antibiotic biosynthesis monooxygenase compare
CSW01_12225 +0.5 1.4 pyruvate dehydrogenase complex transcriptional repressor PdhR compare
CSW01_07710 +0.5 2.3 methyl-accepting chemotaxis protein compare
CSW01_11605 +0.5 1.6 ATP-dependent zinc protease compare
CSW01_16435 +0.5 0.6 DUF3265 domain-containing protein compare
CSW01_17255 +0.5 0.9 nucleoside diphosphate kinase regulator compare
CSW01_12500 +0.5 1.9 hypothetical protein compare
CSW01_03635 +0.5 1.7 3-deoxy-7-phosphoheptulonate synthase compare


Specific Phenotypes

None in this experiment

For Vibrio cholerae E7946 ATCC 55056 in phage experiments

For phage ICP3_phage across organisms