Experiment set4IT087 for Methanococcus maripaludis S2

Compare to:

Formate deepwell acetate FREE

200 most important genes:

  gene name fitness t score description  
MMP_RS01175 -8.9 -6.1 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS01500 -8.6 -4.2 CBS domain-containing protein compare
MMP_RS06680 -8.5 -15.3 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS06895 -8.1 -4.0 selenocysteine-specific translation elongation factor compare
MMP_RS06700 -7.6 -17.5 hypothetical protein compare
MMP_RS06685 -7.5 -17.1 formate dehydrogenase H subunit alpha selenocysteine-containing compare
MMP_RS06355 -7.2 -4.1 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS03015 -7.1 -10.6 GTP 3' 8-cyclase MoaA compare
MMP_RS08790 -6.9 -3.8 translation initiation factor IF-2 subunit alpha compare
MMP_RS06705 -6.7 -11.4 formate/nitrite transporter family protein compare
MMP_RS06295 -6.5 -10.0 methanogenesis marker 14 protein compare
MMP_RS07445 -6.5 -8.2 helix-turn-helix domain-containing protein compare
MMP_RS08650 -6.3 -4.4 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMP_RS06715 -6.2 -16.6 cache domain-containing protein compare
MMP_RS01020 -6.2 -1.8 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS06720 -6.1 -6.4 response regulator transcription factor compare
MMP_RS03315 -5.8 -2.9 ferrous iron transport protein A compare
MMP_RS03600 -5.8 -4.2 triose-phosphate isomerase compare
MMP_RS08715 -5.8 -4.1 formylmethanofuran dehydrogenase subunit B compare
MMP_RS02280 -5.8 -1.6 DUF211 domain-containing protein compare
MMP_RS02195 -5.7 -5.6 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS08210 -5.7 -4.1 phosphatidylglycerophosphatase A compare
MMP_RS06400 -5.7 -3.5 4Fe-4S binding protein compare
MMP_RS06350 -5.6 -9.3 HesA/MoeB/ThiF family protein compare
MMP_RS05515 -5.4 -5.9 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS04605 -5.3 -6.3 cobalt ECF transporter T component CbiQ compare
MMP_RS08095 -5.2 -9.3 dethiobiotin synthase compare
MMP_RS06345 -5.2 -11.3 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMP_RS04615 -5.2 -4.8 PDGLE domain-containing protein compare
MMP_RS06285 -5.1 -4.4 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS04585 -5.0 -11.7 AIR synthase related protein compare
MMP_RS03580 -5.0 -4.8 signal recognition particle-docking protein FtsY compare
MMP_RS01755 -5.0 -2.0 DUF2097 domain-containing protein compare
MMP_RS00300 -5.0 -1.4 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS04500 -4.8 -18.4 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMP_RS06475 -4.8 -6.6 FAD-dependent oxidoreductase compare
MMP_RS08820 -4.8 -6.3 hypothetical protein compare
MMP_RS04780 -4.8 -5.4 ribonuclease P compare
MMP_RS06730 -4.8 -3.2 phosphopantothenate/pantothenate synthetase compare
MMP_RS01005 -4.7 -2.7 riboflavin synthase compare
MMP_RS05920 -4.7 -1.3 50S ribosomal protein L37e compare
MMP_RS08105 -4.6 -13.0 6-carboxyhexanoate--CoA ligase compare
MMP_RS08645 -4.6 -11.3 UPF0179 family protein compare
MMP_RS08460 -4.5 -4.5 proteasome-activating nucleotidase compare
MMP_RS08100 -4.5 -10.0 8-amino-7-oxononanoate synthase compare
MMP_RS01610 -4.5 -4.7 hypothetical protein compare
MMP_RS01225 -4.5 -8.4 DUF5379 domain-containing protein compare
MMP_RS06315 -4.5 -1.8 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMP_RS06340 -4.5 -15.7 phosphoadenosine phosphosulfate reductase family protein compare
MMP_RS08720 -4.4 -3.2 4Fe-4S binding protein compare
MMP_RS06230 -4.3 -6.4 helix-turn-helix domain-containing protein compare
MMP_RS07730 -4.3 -4.5 pyruvate synthase subunit beta compare
MMP_RS06370 -4.3 -4.7 biotin synthase BioB compare
MMP_RS02875 -4.3 -14.7 chorismate pyruvate-lyase family protein compare
MMP_RS04620 -4.3 -16.8 cobalt transporter CbiM compare
MMP_RS00305 -4.3 -4.1 phosphoribosyl-ATP diphosphatase compare
MMP_RS07635 -4.2 -10.7 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS00515 -4.2 -1.7 DUF655 domain-containing protein compare
MMP_RS08635 -4.2 -3.9 UbiA family prenyltransferase compare
MMP_RS00695 -4.2 -1.7 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS07645 -4.1 -8.4 aldehyde dehydrogenase family protein compare
MMP_RS01985 -4.1 -10.9 F420-dependent methylenetetrahydromethanopterin dehydrogenase compare
MMP_RS04685 -4.0 -6.0 DUF126 domain-containing protein compare
MMP_RS00685 -4.0 -7.5 2-phospho-L-lactate guanylyltransferase compare
MMP_RS01800 -4.0 -5.1 TIGR00303 family protein compare
MMP_RS04890 -4.0 -1.6 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS05930 -4.0 -5.5 3-isopropylmalate dehydratase large subunit compare
MMP_RS07735 -3.9 -1.6 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha compare
MMP_RS01795 -3.9 -3.0 methanogenesis marker 6 protein compare
MMP_RS06625 -3.9 -3.2 DNA primase compare
MMP_RS06630 -3.8 -2.2 UPF0058 family protein compare
MMP_RS02240 -3.8 -5.4 methanogenesis marker 7 protein compare
MMP_RS03035 -3.8 -6.0 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS05845 -3.8 -3.6 tRNA-intron lyase compare
MMP_RS07380 -3.7 -4.0 transcription elongation factor Spt5 compare
MMP_RS07195 -3.7 -12.5 M20 family metallo-hydrolase compare
MMP_RS02900 -3.7 -1.5 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS07005 -3.6 -1.5 4Fe-4S binding protein compare
MMP_RS07525 -3.6 -7.4 4Fe-4S binding protein compare
MMP_RS03155 -3.6 -9.5 precorrin-6A reductase compare
MMP_RS08745 -3.6 -8.8 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS02145 -3.6 -9.3 winged helix-turn-helix transcriptional regulator compare
MMP_RS00895 -3.5 -7.8 hypothetical protein compare
MMP_RS01380 -3.5 -7.8 PHP domain-containing protein compare
MMP_RS06270 -3.5 -10.2 TIGR00300 family protein compare
MMP_RS05345 -3.5 -9.4 hypothetical protein compare
MMP_RS04775 -3.4 -4.8 adenosylhomocysteinase compare
MMP_RS03475 -3.4 -1.3 hypothetical protein compare
MMP_RS01960 -3.3 -1.3 hypothetical protein compare
MMP_RS09020 -3.3 -2.7 hypothetical protein compare
MMP_RS07845 -3.3 -5.4 LL-diaminopimelate aminotransferase compare
MMP_RS02345 -3.3 -7.1 GTP-dependent dephospho-CoA kinase family protein compare
MMP_RS03025 -3.2 -7.4 molybdenum cofactor guanylyltransferase compare
MMP_RS01265 -3.2 -2.5 hypothetical protein compare
MMP_RS06020 -3.2 -7.5 archaeoflavoprotein AfpA compare
MMP_RS01830 -3.2 -3.7 tRNA-Val compare
MMP_RS05085 -3.2 -16.5 AAA family ATPase compare
MMP_RS06105 -3.2 -13.2 hydrogenase maturation peptidase HycI compare
MMP_RS07200 -3.2 -10.7 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS07630 -3.2 -2.8 ATP-binding cassette domain-containing protein compare
MMP_RS07580 -3.2 -4.0 DUF356 domain-containing protein compare
MMP_RS03640 -3.2 -5.3 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS02355 -3.1 -6.2 30S ribosomal protein S27ae compare
MMP_RS03700 -3.1 -12.2 sodium:proton antiporter compare
MMP_RS00115 -3.1 -18.4 radical SAM protein compare
MMP_RS05075 -3.1 -23.6 acetyl-CoA decarbonylase/synthase complex subunit gamma compare
MMP_RS08440 -3.1 -3.3 cell division protein SepF compare
MMP_RS08300 -3.1 -1.8 metal-sulfur cluster assembly factor compare
MMP_RS01220 -3.1 -10.0 hypothetical protein compare
MMP_RS05080 -3.1 -16.6 acetyl-CoA decarbonylase/synthase complex subunit delta compare
MMP_RS07605 -3.0 -3.1 diadenylate cyclase compare
MMP_RS01325 -3.0 -3.0 dihydroneopterin aldolase family protein compare
MMP_RS03445 -3.0 -2.0 methanogenesis marker 17 protein compare
MMP_RS05090 -3.0 -13.1 CO dehydrogenase/CO-methylating acetyl-CoA synthase complex subunit beta compare
MMP_RS04710 -3.0 -2.5 hypothetical protein compare
MMP_RS05440 -3.0 -14.3 winged helix-turn-helix transcriptional regulator compare
MMP_RS02135 -3.0 -8.5 DUF5612 domain-containing protein compare
MMP_RS05100 -2.9 -18.9 CO dehydrogenase/acetyl-CoA synthase complex subunit alpha compare
MMP_RS06120 -2.9 -3.7 UPF0147 family protein compare
MMP_RS05095 -2.8 -12.2 CO dehydrogenase/acetyl-CoA synthase complex subunit epsilon compare
MMP_RS03400 -2.8 -5.1 archease compare
MMP_RS03435 -2.7 -3.4 ketol-acid reductoisomerase compare
MMP_RS01545 -2.7 -2.4 CBS domain-containing protein compare
MMP_RS06885 -2.7 -3.8 50S ribosome-binding GTPase compare
MMP_RS00110 -2.7 -5.0 hypothetical protein compare
MMP_RS07685 -2.7 -11.2 TIGR01212 family radical SAM protein compare
MMP_RS07545 -2.7 -2.1 HTH domain-containing protein compare
MMP_RS05055 -2.6 -15.7 DUF166 domain-containing protein compare
MMP_RS00320 -2.6 -3.8 class I SAM-dependent methyltransferase compare
MMP_RS02010 -2.6 -10.2 PHP domain-containing protein compare
MMP_RS01725 -2.6 -5.0 class I SAM-dependent methyltransferase family protein compare
MMP_RS08445 -2.6 -7.4 DUF2099 family protein compare
MMP_RS07365 -2.6 -13.3 2-phosphoglycerate kinase compare
MMP_RS07575 -2.6 -5.7 RNA ligase partner protein compare
MMP_RS05060 -2.6 -14.4 AAA family ATPase compare
MMP_RS05265 -2.6 -3.8 2-isopropylmalate synthase compare
MMP_RS05070 -2.6 -12.3 4Fe-4S dicluster domain-containing protein compare
MMP_RS01475 -2.5 -10.5 phosphosulfolactate synthase compare
MMP_RS06975 -2.5 -4.5 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMP_RS01700 -2.5 -2.0 dihydroxy-acid dehydratase compare
MMP_RS02340 -2.3 -2.6 DNA-directed RNA polymerase subunit E'' compare
MMP_RS07600 -2.3 -4.1 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS05065 -2.2 -5.3 CooT family nickel-binding protein compare
MMP_RS01365 -2.2 -2.7 archaeal proteasome endopeptidase complex subunit alpha compare
MMP_RS06925 -2.2 -3.7 ribonuclease VapC4 compare
MMP_RS08435 -2.2 -3.6 Era-like GTP-binding protein compare
MMP_RS02235 -2.1 -13.0 CBS domain-containing protein compare
MMP_RS00620 -2.1 -11.2 4Fe-4S binding protein compare
MMP_RS00295 -2.1 -4.0 gamma carbonic anhydrase family protein compare
MMP_RS03145 -2.0 -10.4 fibrillarin-like rRNA/tRNA 2'-O-methyltransferase compare
MMP_RS07750 -2.0 -6.8 DUF357 domain-containing protein compare
MMP_RS00900 -2.0 -3.6 50S ribosomal protein L39e compare
MMP_RS06215 -2.0 -4.1 30S ribosomal protein S6e compare
MMP_RS00985 -2.0 -6.4 CDC48 family AAA ATPase compare
MMP_RS05430 -1.9 -4.0 TIGR00288 family NYN domain-containing protein compare
MMP_RS05850 -1.9 -7.7 Ldh family oxidoreductase compare
MMP_RS05555 -1.9 -2.1 DUF4040 domain-containing protein compare
MMP_RS03095 -1.9 -8.3 diphthine synthase compare
MMP_RS03140 -1.9 -12.4 hypothetical protein compare
MMP_RS02165 -1.8 -9.9 tRNA-dihydrouridine synthase compare
MMP_RS01385 -1.8 -1.2 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS06940 -1.8 -2.4 polyprenyl diphosphate synthase compare
MMP_RS08785 -1.8 -2.1 RNA-protein complex protein Nop10 compare
MMP_RS05540 -1.8 -2.3 hypothetical protein compare
MMP_RS00050 -1.8 -8.8 AarF/UbiB family protein compare
MMP_RS06670 -1.8 -3.8 glucose-6-phosphate isomerase compare
MMP_RS02190 -1.8 -2.6 sulfopyruvate decarboxylase subunit alpha compare
MMP_RS01840 -1.8 -11.4 TIGR00289 family protein compare
MMP_RS04870 -1.8 -4.8 TIGR02253 family HAD-type hydrolase compare
MMP_RS02800 -1.7 -4.6 nucleotidyltransferase domain-containing protein compare
MMP_RS01250 -1.7 -7.7 tRNA (guanine(26)-N(2))-dimethyltransferase compare
MMP_RS06200 -1.7 -9.0 M24 family metallopeptidase compare
MMP_RS00040 -1.7 -8.2 TIGR03576 family pyridoxal phosphate-dependent enzyme compare
MMP_RS07755 -1.7 -2.1 DUF555 domain-containing protein compare
MMP_RS05765 -1.6 -8.5 M42 family metallopeptidase compare
MMP_RS07555 -1.6 -1.3 monovalent cation/H+ antiporter subunit E compare
MMP_RS06865 -1.6 -1.3 HypC/HybG/HupF family hydrogenase formation chaperone compare
MMP_RS08840 -1.6 -8.8 class I SAM-dependent methyltransferase compare
MMP_RS05815 -1.5 -1.7 NOL1/NOP2/sun family putative RNA methylase compare
MMP_RS05545 -1.5 -6.8 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS01335 -1.5 -3.6 prefoldin subunit beta compare
MMP_RS00315 -1.5 -8.3 Nif3-like dinuclear metal center hexameric protein compare
MMP_RS01980 -1.5 -11.2 trimeric intracellular cation channel family protein compare
MMP_RS05925 -1.5 -4.1 small nuclear ribonucleoprotein compare
MMP_RS05875 -1.5 -3.0 hydroxyethylthiazole kinase compare
MMP_RS06855 -1.5 -9.0 hypothetical protein compare
MMP_RS03205 -1.5 -1.7 peptidyl-tRNA hydrolase Pth2 compare
MMP_RS01665 -1.4 -2.3 DUF2111 domain-containing protein compare
MMP_RS03250 -1.4 -3.3 MJ1244 family protein compare
MMP_RS05445 -1.4 -8.3 CoB--CoM heterodisulfide reductase subunit B compare
MMP_RS07425 -1.4 -4.8 GTP-binding protein compare
MMP_RS01445 -1.4 -7.8 hypothetical protein compare
MMP_RS02230 -1.4 -10.1 sodium-dependent transporter compare
MMP_RS06130 -1.3 -5.0 peptidylprolyl isomerase compare
MMP_RS00290 -1.3 -5.7 hypothetical protein compare
MMP_RS07695 -1.3 -7.1 DUF3236 domain-containing protein compare
MMP_RS00810 -1.3 -5.2 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
MMP_RS01720 -1.3 -1.1 replication factor C large subunit compare
MMP_RS08690 -1.3 -9.0 RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5 compare
MMP_RS07190 -1.3 -7.6 chromosome segregation protein SMC compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in nutrient t2 experiments

For nutrient t2 casamino acids across organisms